AMCG00018743 (rnf185,LOC102783490)


Basic Information

Item Value
gene id AMCG00018743
gene name rnf185,LOC102783490
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19606022 ~ 19612141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018743
AGCGCGTCTGCATCCGGGTGCTGTTGCAATCGCGGAGACGTTCAGCTGATCTGAGGACTGCGGCCACACAGCCGGAGACATTGCATTGTGTTAACAAGAAACACACGGGCTCTCTAATGGTACAGACAGCGGACACATCAGCAGAGGGCAAGCTTTTCGATTTGCGGTTTCGCTGAGTGGTGCTGGACATGGCCAGTGCAGCCCCAACAGCCTCGGCCTCGGCCTCCACAGACAGCGCCAGTGCGGGGGGCACCAGTGGCACAGCCACTGGAGAGGGCACTAACCAGGACAGCACATTCGAGTGTAACATCTGCCTGGACACAGCCAAGGATGCCGTCATTAGCCTGTGTGGGCATCTCTTCTGCTGGCCCTGTTTACACCAGTGGTTAGAAACCAGGCCAAACAGACAAGTATGCCCAGTTTGCAAAGCAGGAATTAGTCGTGACAAAGTTATCCCATTGTATGGCAGAGGGAGTACAGGCCAGCAAGATCCACGGGAGAGAACCCCCCCAAGACCTCAAGGACAGAGACCCGAACCAGAAAACCGAGGGgGTTTTCAGGGGTTTGGTTTTGGAGATGGAGGATTCCAGATGTCCTTTGGAATAGGAGCTTTTCCGTTTGGCATTTTCGCCACAGCCTTTAATATTAATGATGGGAGGCCACCaccagCTGTCCCAGGCACCCCACAGTACATGGATGAGCAGTTCCTGTCCCGCCTCTTCCTGTTTGTGGCCCTTGTGATCATGTTTTGGCTCCTCATCGCATAGAAGGAAAGAGGGTAGTGCAGATACTATGGCAATCTTTACATTTCCAGGAAGTATAACAAGAAAACatctgaataattaaaacaatagtttttcAATACAGCTTTTTCATTTGTGATTGGGCAGAGGGGTTACAAATGAGAATTCAGTAGACAATTGTAATGAAAAAGAATGGCAACATAAGAATGGAATGTTCAGCCCTTAATCATCTGTGGACATTACAGCTTAATAAAGAGGGTGCACTATAGCATACGTGCCCTTTTCAATATACTGTCCTTTTCATGACAATGGATGTTTGTATAAATACTAAGCTACTGGACCTGACTAGACAATGGCGGGAGGAGGGgacttaaatataaatattttacattcattttgaatggttaaacaatgtacttttaacaaaaataagccagtatttatttagatctgcattttaatatgttgGCACTAattgttttcatgttaatgcaaatattttaatgttcttgAAAGAGATGTTGAACTTGAAAGAGGATAtctatataaaacattgtatgcATTAGGTACAATAAtgcattgtcttttcatttacatttaactaAAAAATGGattgtgtaaaaatgttttagaattttttttgtattattattatttctattattaattACTATAACCCTGCCTTTTCAAGTTCCAATTGAAAGTTTCACTTCACTGCTGGACACATTAATGGTATATGTCTTTTTGGAGCTGtggaataattgtattgttaaaaataataataataataaaaaaatgtctcGACAGAGATGTATGAGTTCAAGCCAAAATTATCCAACTAAATAAATCGCCTTCctctttttaaaactgttcatGTAAATTGGAGAATACCTGCTAGTGTGTGGAACACCCCTCTTTAAAGAATTGTTAAAAGAGCATTGAGAGATGATTTGTTGGTATGAACCTAATGCCCACTGCTTTCAACAAGAAGGGTTATGCACTGCCATAGACAGAGGTCAATGTTGAGCTGCTTTTCAGGGCTAAGTGTTCAGTGGGACAATATATTGTTATAGTGCTCTTAGTCATTACTTTAAACATAGTGAGGTGGTCAAATGAACCGCCAGGTATATGAATACGTTTCTAAATTTAGCTTCATGTACTTCGTTAACCATTACCCTTCCACTGAGTGTCTGAGTTACAGGATTATTCTAgttgtaatataatatttagcTGAAGCTGGATGGAAATTTCTGCTTAGAACCATAGGCTGAACTTTGTCAtcttacaaaatcaaaattcaaGAGTGACCTCTGTGAGTGTGCAACTCGGTACAGTAAAGTGGAAAATATGAAACCATGACATCAgcataaaatgaatatttaataataataatttaataatatttaaaaagcaacgCCTCCCCACTGACTTTGGCCATTCTGGTGGCAGCAAAGATGGAAAGGGCTTTCATTGTGTTCTCTGCAATATGTGGAAACTCAGCAGCAGCATTTCATTTGCTTGACTTGGTACCATTTGGCTCTTTTATGTTGAATTGATGCTgaaatttttgtttgttttttattatgttacatCTCAAGGTTTTAATTCCAAAATGGTGGGCCCACTCGAAGCCTCTATGGTTGACACCATACACAACGACATGGGAAGGATTATAGTATTTTCTACACTGTAACATTTATGCAATAACAGTGACTTGCTTCACCATTgtacactttttgtttgttcttttcttttcatattgtataattacattttgatttagttttgttctcCACCAGCTTTGAGCAGTTTTTTCTAtgtcttgttttgattttagaaAGAATTGAAAACTGGTTCCATTTAGACATTTCTTAGATTAGGGTTTTGTCACACTTCTGGTATGTAAATAACAAACGAGCTTTAGTGGAGGTCATCAATGTTCACCTAGTTGTTTCTTACCTTTGAATTTTTAATTAACCAATGGATATTAACATGAACAGTATAAGattttttgttaaaagtaacatttattcACTGCCTCGCCGATTTTAACTCTTCTGTGTGCAATACTGTActtctaaataaatgtatttttgaaaaaacTCTTTCAAGCTTAGTTATATTAATGTCATAAAAGCTTAAGGAGTGTACATGTGACAGTGCACTGAAAGCTTAATGTCTATaagaatatgtatattttttatcaccactttttattgtgtgtttagtGCCATTATGCAATAAAAATGGGTCAAAGTATTTTGGATGAACACTGGTCTCCAAAACACCCTGATTATGC

Function

symbol description
rnf185 Predicted to enable ubiquitin protein ligase activity and ubiquitin-like protein conjugating enzyme binding activity. Predicted to be involved in ER-associated misfolded protein catabolic process and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum membrane and mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human RNF185 (ring finger protein 185).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF185

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10666 RNF5; E3 ubiquitin-protein ligase RNF5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018743 True 3042 mRNA 0.38 7 19606022 19612141

Neighbor

gene id symbol gene type direction distance location
AMCG00018736 sart3 coding upstream 260264 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 278143 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 299282 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 310021 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 323056 19274909 ~ 19282966 (+)
AMCG00018746 NA coding downstream 484 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 64481 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 66630 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 75443 19687584 ~ 19701791 (+)
AMCG00018751 NA coding downstream 94434 19706575 ~ 19713962 (+)
G118304 NA non-coding upstream 26991 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 126066 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 132562 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 149039 19456142 ~ 19456983 (+)
G118013 NA non-coding upstream 875210 18466368 ~ 18730812 (+)
G118410 NA non-coding downstream 381985 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 667147 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 690529 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 765147 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 826819 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 123930 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 371671 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 697066 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 765927 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 884679 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 358998 19971139 ~ 19974730 (+)
G118557 NA other downstream 647236 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 760078 20372219 ~ 20374812 (+)
G118623 NA other downstream 902019 20514160 ~ 20514491 (+)
G118635 NA other downstream 980595 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location