AMCG00018746


Basic Information

Item Value
gene id AMCG00018746
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19612625 ~ 19636734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018746
CGCCTGGCGACGGGACTGTTTCAGCTGCAACTCCTGTTCCAGGTGTTGCCGTTTGATCCCTACAGGTCTCCGTACTGGAATGTCAAGTGCATGACGTCATTCACCCTGCCAACAAGAAACTCCAGCAAACTCCCGGCAGAGCTGTTTCGCTTGTCTGTGAAGAAGAGGAATTTAAAGCCCAAATCTCAGTCACAGAAAAGCGTTACGTAACGCGGCGGTGCATCTCTTTCCCCCGACGATACTGCGGGGCCCCGGAGAATCATGTGAACTTCAGCAAAACCAATCTCGACCAGCAGCTAGATGGACGAACTGGAAGGTGCTCGCAGTGCTGTGACCTGTTGAATAACTGGTACTATGAGAAAGATGGCAAACTGTACTGCCACAAGCATTACTGGGAGAACTTCGGGGAGTCCTGTCACGGCTGCACTCTGCTCATGACTGGGCCAGCGATGGTGGCAGGGGAGTACAAATATCATCCCGAGTGCTTTGTTTGCCTGAGCTGCAAGGTGGTGATTGAAGAACAAGATACATATGCACTGAAGCGCTCTCCAGACACGGCCCGGGACTCCTTACCTCACACGTTCACCCTCCTCTCGGTGCCCGCGGCCACCAACGGCAAGAGGGGCTTCTCCGTGTCCATCGTCCGAGACTGCAGCATCACCAGCGTCCAAGTCAAAGAAGTTCTCGAAATGCACATCAGTCCAGAGGTGCGGAATGCTATCCACGCTGGTGACAGGATCCTGGAGATCAATGGAATCCAAGTGGGAGCCCTGATGGAAGACGAGGTAAAAGATTTGATTCATCGGACAAACCAGACCCTGCAGCTGCTGATCGAGTACGACCCAGTCAGGCAGCGTCTGGACAGGCTTCAACTGGGGTCCTCGCGCAACCGCCTGGGGGTGCCTGTCCCCTCTCCGCTGAGGCTGTCCCCACCCTCGGTCCTGGAAGGCAGGGACACCATTGATGACGGCACGCTGAAAAGGAAATCTCTGAGgcgCAGTAATAGTATTTGTAAATCGCCCGGCCCTGCTTCTCCAAAGGAGCACCCCACCCTGACGCGGGACATCAGCCGCTCCGAATCCCTGCGCTCGTCCTCCAGCTTTTCCCACCGCATCTTCCGCCCCTGCGACCTCATCCACGGGGAGGTGCTGGGAAAGGGCTTCTTCGGCCAGGCCATCAAGGTTACACACAAAGCCACCGGAGAGGTGATGGTGATGAAGGAGCTGATTCGTTGTGACGAGGAAACTCAAAAAACATTCCTGAAGGAGGTGAAAGTAATGCGCAGCCTGGAACATCCCAATGTCTTGAAATTTATTGGAGTCTTATACAAGGACAAGAGACTGAATTTAATAACGGAATTTATCGAAGGGGGGACACTAAAGGATTTCATCAGAGACATGGATCCGTTCCCATGGGAACAGAGGATCAGTTTCGCCAAGGGCATTGCTTCTGGAATGgcTTACCTCCACTCGATGAGTATCGTCCACAGAGACCTAAACTCTCACAACTGCCTGGTCAAACTGGACAACACGGTGGTGGTGGCGGATTTTGGACTGTCCCGTCTGATTGTTGAGAACAAGACCAGAAGCCCGCCAGAGAAGCCCACTGCTAGAAGGAGGACTTTGAGGAGAGTGGACCGCAAGAAGCGCTACACCGTGGTGGGAAACCCATACTGGATGGCACCAGAGATGCTCAATGGTAAACGCTACGATGAGAAAGTGGACGTTTTCTCTTTTGGGATTATGCTGTGTGAGATTATTGGACAGGTATATGCAGATCCAGAATGTCTGCCCAGGACGTTTGATTTTGGGCTGAACGTGGAGAAGTTTTCTGAAAAGTTCCTCCCTGAAGATTGCCCGCCGGCCTTCTTCCCCCTGGCTGTCGCCTGCTGTGATCTCACCCCCGACAGCAGGCCTGACTTTAACAAACTGGAGGACTGTTTCGAGGCCCTGGCCCTGTACCTGGAGCTGGGCATCCCGCTGCCCAatgagctggaggagctgcacaACAGCCTCTGCAGGCCGCCCAGCCCCAACGGCACGGGCCTGCCTGGGACCGGCCCGGCGCTGCTGCACTCCGGGGACGCCCCGCTGGCCGAGAACAGAGCCTAGCTGCTGCCTGGGGCTGCTGGGAGCGGCACGTCGATATGCACTACACTCTCTGGGATTCCACCGCTAAAACTGGACTCAACCCTTGTACTAATGGGATTACTCCTAGTGTAGATCCAGCTCTCTgtattgtgttaaaatatgCAACTCTGAGGGAAGGGAAGACTTTCAGAAATCCACCCTTAACAATCAGAAAAGTAGCATTTCAGAGCACAGACGCCTTATGCAACATTCAGGCACCACATCAAAGTCTAACCTCTAAGGGCATAGGTTTAAATGAACAGAACACCACACTTCTCCTTGTTTTGGATGATTAGCGCAATAATGATTTGCTGATAATGAATTCTCTCCTTCTTTGATACCCTTTAGTGTTTCTCTCTGTGCCTCAACTGGTTGGTTTCAGTGGGGCTTGCTGTGTACAAACTGTGTAGTTGAACACGGTGAGAGTCCTCCTCCGTGCTCGGACAATCTGGTAATGCTTAACTTGCAGAAAAGCCCTGAAGTGGGCGGAGCTTCTTGGGAGTGCTTGGAATCCTGAACTCGTTAAAGCCAGGGCGATTAGAACCCAACACTAAAGCTAGAGATAGTTGCCCTGGAAACACAAATCAttatctgaagaaaaaaatataggGAGACTTAACATGTTGGCTAGTGGCCTAGACAGAAACGCACATAATACCAAAATTGCTGGTACCACAGAACGTTCCTGATCTCTGTTTTGCTAATGCCTGCATTAGTTTTATCTGCTCATCTCGGATTAACCTGcctgttgtattttaaaaaaacaaactaaagtcAGTAAGTGTGACAGTTTCGGAGCAGGGTTACACGCCATAATGAATGTTAGGGGGACGAAAAAAGCTCCCCTTTAGTGGGCAGCCATGTCTTGTGAATAAGGAATAAAATGCATCCTACTAtagtatgtataatttaaatcgCATGAACGTCCCTCATAAGAGACTTGTATAAAACTggaggatttatttttgtttaaaaagctgTCTGTAAAATAGAATTGAATTTCTTTatatacacagtgtgtgtgtgattgtgtgtaatatacatacatatatgtatgtagactgtgtatttgtaattttgttttctgggGGTTCATTGTTTTctataacaaacacaaaatacaaacttaGAATGtagaatatgaaatgtatataatgtgaagAAGTTAGATTTTCTGTTTCTAAGGTACtgacatgtaaaataatagtaacCACTACTATGTGTATAATTGTGTTGCCCACATTAAGagaaaatgtgtacatgtaATAAAAGGTTGAAAGTGGc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05744 LIMK2; LIM domain kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018746 True 3413 mRNA 0.49 15 19612625 19636734

Neighbor

gene id symbol gene type direction distance location
AMCG00018743 rnf185,LOC102783490 coding upstream 484 19606022 ~ 19612141 (+)
AMCG00018736 sart3 coding upstream 266867 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 284746 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 305885 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 316624 19289189 ~ 19296001 (+)
AMCG00018745 NA coding downstream 39888 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 42037 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 50850 19687584 ~ 19701791 (+)
AMCG00018751 NA coding downstream 69841 19706575 ~ 19713962 (+)
AMCG00018757 NA coding downstream 93081 19729815 ~ 19732775 (+)
G118304 NA non-coding upstream 33594 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 132669 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 139165 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 155642 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 936399 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 357392 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 642554 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 665936 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 740554 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 802226 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 130533 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 378274 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 703669 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 772530 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 891282 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 334405 19971139 ~ 19974730 (+)
G118557 NA other downstream 622643 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 735485 20372219 ~ 20374812 (+)
G118623 NA other downstream 877426 20514160 ~ 20514491 (+)
G118635 NA other downstream 956002 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location