AMCG00018751


Basic Information

Item Value
gene id AMCG00018751
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19706575 ~ 19713962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018751
gTCCACCGAACCAAAAAATGGATCGGTCCCCCTgccatttgccagaattgcccgatTGCCAGTCCGCCTATGGTTCAGGCACCAAACACTGAAGCTTTGCTATGAAACTGGCATTCAAACCCCGAGTTGAGTGGGCTGTCCTGAATGGTCCAGCAATTGCCGGAGGAGGTTTTACAATCCATGTGTCTTAAGTTAAGGGGACGGATCAAGTGGCAGAGACTATTTAACAGGTAGCTAATTGCATTTTTGTGGGCATCTGGACTTGACAGCTTTTAGACCTGCCGGgtgatttgtaaaataaaatatattattccgATCCTCCTAAGGCTAAGGGATTAACAAGGGAATCCCATGCATTACATCTCGCCGGCGTTGTTATTCATATGTTTTTGAAGTCGAGGAATCCTCTGAAGACAAGCAGTGGAAACATATACAACCACCTTTTAGACTGGGACGACGTGTTAACGATGCTCCTGATAACACCCgttttcgttttttgttttattgggaCAACACTAGCAGCTGAATATTGCTACGATATCAGTAGCAGTTGTGGTCCTGCCAACTGGGCGAATTTTTCCTCAACATGTGACGGGTCCAAACAGTCCCCAATAGACATTGATCGCTTgagattatataaaaacatgtcattgGGTGCATTTACTGTAAAAGGCTATGATACATCCCCAAACCAGACATGGAGGATCTCAAACAATGGATACACAAttGTACTGACTTTAAGCAGTGAGTTGAATGTGAGTGGAGCAGGTCTACCTGTAACTTACAAAGCTGCACAGTTGCATTTCCACTGGGGGAATCTTACTACAAACGGGTCAGAACACACTCTGGATTCAAAGCGGTATTCTATGGAGaTGCATATTGTTCATATTAAATCAACACATGCAAACATTAGTAGTGCATTGGGAGATCCAGAGGGTTTGTCTGTATTCGGGTTCTTTATGCAGGTGTCCGGTACTAATAACACCAACTATGATACCATCATCAACGCAATAAGAAAGATTCCTCACAAAGGTGACTCGTATAATTTACCTTCTACATTTCCACTGGAAAGTCTTCTTGCTCCAGGGGAAAAATATAACCGATATTACCGATATGTAGGCTCTCTGACCACCCCTCCTTGTAACCAGTCTGTCATCTGGACAATGTTTGAAGAACCTATCAACATTAGTCAGACCCagTATAACTTTTTTGTGAACAACATCTATTCCACGCCAGCTGAAGTATCACAACACGATAAACTGATAGAAAACTTCCGTCCCATTCAGGCTGTGAACAGTCGCAGAGTTTATGCCTCTAAAGATGCTACTGTTTTAAGTTGTGCCAGCATTCCTGTGCTAAGTTTGATCCTGTCTGTTCTTCAACTCTTGAGTATGAAACTTGTGCTTTGAGGTTTGTTTTCATCCATAAGTGCTGTACtacaaactattattttaaatgggttCCTGTCAATTATACATGTgccaaatctctggaagacaaagaaatcataaaaatgtacacaacaATGTTTTTTAGTGTATCTTTATAAAGACTAGTTGGTTTAAAAATGATGCAATTTGTATAAAGGTTATTTAATGTTTGATAGATTGTATTTGTGGGAACGTATTGAACTCGTAGGTACCATTACTGCTCCTATTGAAGAGCAATGGCTGAACAAGGTTGTTACAAATGAAGGATGTAATAGTGCTGCTGAATAAGAGATGCCATTGTCTGTGTAGCTCTGTAAACATAGCCACTTCCCTAAAGCCAGAGTTAAAAAAGTGCCTTGTCATTTATCGATTTATAATCTCTGTAATGGACTGATGTCATGCTTTGTCATGTTTGTTCATCAGACAAAGAGATTTTGTTCTAAAAAGGCTCTTTTCACTAGACTGTATGATTCAATGATGAGACCTTTGATGATGGCAcacctgaaataaataacttcTAAAAGACCATGCTCCGAATCTATTCTTTAGATTATTTTTAGCATATTAACCATTGTCTGACTGCGATATGATATTTGCCTTCTCACACGGGAGATTACAAGCAACTTCCCTGGAGGATTTAGATCATGACATGAATTTATGTAGCCACGTGAGTTTGTGTTTATAAAGGAAGACACATTCAGAATTTTGGATAGTTTTGGCAGCTAGTaagcactgca

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018751 True 2167 mRNA 0.40 8 19706575 19713962

Neighbor

gene id symbol gene type direction distance location
AMCG00018754 dgcr2 coding upstream 4784 19687584 ~ 19701791 (+)
AMCG00018744 NA coding upstream 22013 19678771 ~ 19684562 (+)
AMCG00018745 NA coding upstream 28636 19676622 ~ 19677939 (+)
AMCG00018746 NA coding upstream 69841 19612625 ~ 19636734 (+)
AMCG00018743 rnf185,LOC102783490 coding upstream 94434 19606022 ~ 19612141 (+)
AMCG00018757 NA coding downstream 15853 19729815 ~ 19732775 (+)
AMCG00018752 NA coding downstream 37652 19751614 ~ 19771954 (+)
AMCG00018753 NA coding downstream 91876 19805838 ~ 19851791 (+)
AMCG00018758 NA coding downstream 160366 19874328 ~ 19889731 (+)
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding downstream 245776 19959738 ~ 19966779 (+)
G118304 NA non-coding upstream 127544 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 226619 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 233115 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 249592 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 1030349 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 280164 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 565326 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 588708 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 663326 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 724998 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 224483 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 472224 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 797619 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 866480 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 985232 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 257177 19971139 ~ 19974730 (+)
G118557 NA other downstream 545415 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 658257 20372219 ~ 20374812 (+)
G118623 NA other downstream 800198 20514160 ~ 20514491 (+)
G118635 NA other downstream 878774 20592736 ~ 20593016 (+)

Expression


Co-expression Network