AMCG00018752


Basic Information

Item Value
gene id AMCG00018752
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19751614 ~ 19771954 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018752
atgaaatctCACAGCTGGCAATGAGGGTCGCAAGAGAGTCGATTCAAGCGCACATTGGCTGCCTGGCTGTCGGTGATGGCTAAATCCAAGTCCAGATTGCGCTGCTGCGTGTGCGTCTTCGCCTTGTGCTTCATTGCGATCATTATTCTCTTATTCATTTTCCTCCTAAGAAGTCCGACATGCGCAGAAGGGCAGTACAGCCGCGGCGCTGTGGCTGCGGACTCTCAGATCTGTTCTTTATTCGGAAGAGACATACTGAAGGAAGGGGGCTCGGCAGTAGATGGTGCCATTGCAGCACTTCTGTGCACCTCCTTGATCAATCCACAAAGCATGGGAATTGGTGGGGGAGCAATATTCACAGTTTTTGAAAAGACAGGCAAAGTTAAAGTCATAAATGCCCGGGAAACAGTTCCAAACATTTTCCAAGCTGATCTGATGAAGGACTGCCCCATGGGATCCCCATTAATTACTGGCAGTAAATGGATTGCTGTGCCTGGGGAGATTCGTGGTTATGAAAAGGCACACAAGATGTACGGCAAGCTGCCCTGGAAGAGACTGTTTGAACCGACGATCAAACTGGCCAGAGATGGGTTTAAAGTGCCTCAAATACTCAGTCGGTACCTCCAGTTTCCCATGATAAAAGGGAAAGTGGAAGGCTCGTCTCTGTGTGCCTTGTTTTGCGATGAAAATAACAAGACTCTAAAGGAAGGGGACACGCTGCGTTATGAGAAGTTGGCAGACACGCTTGAAGCAATTGCCAATAGCGGACCTGATGCATTTTATAAGGGCAAGCTGGCTGATGATTTGATCACGGACGTGCAGAATGAAGGTGGAACTCTGTCAACTGCAGATTTGGAGTCCATGCAGGCCGAAGTCTCTGATGCATGGACAGTCCAACTGGGGACCTACACTATGTACTTACCTCAGCCACCAGCAGGGGGAACTATTCTGAGTATTATACTCAACATTATGAAAGGGTACAATTTAAATCCCAGTTCCTTGGAGGGAGACAATAAATTCCTGACCTATCACCGCTACATTGAGGCTCTAAAATTTGCAAACGGACAGAAGAGGAAGGTCTGGGATCCTgcagtAGCTGAAAGGTTGATTAAGGATGATTTTGCAGCCTATGTGAGGTCGCTAATCAGCAGCAACCAGACCCACCCTCGCCAGTACTACAATGTCAGTATCTCTCGCGACGGAGTGGGTACCACCCACATCTCAGTCCTGGCTGAAGATGGCACCGCTGTCTCTGTTACCAGTACCATCAATCAATTATTTGGCTCAATGGTGTATTCTCCGAGCACGGGAGTCATTCTCAATAATGAGCTCGCTGATTTCTGTGGCCTGGTGGACAGCATCTCGACAGGGGAGAAGCCCCCCTCATCCATGACTCCAGTAGTGTTATATTCCAAGTCAGAGAAGAAAACCCTGGTGATAGGAGGCTCTGGAGGATTCATGATCACTAGCAGTGTTGCCATGGCTATCATGAACCATCTGTGGTTTGGAAAAGACTTGAAAGAAGCAATAAGTGCTAAGGTGGTAACTGTGAACTCAACTAATGGAGTGAATTTTGAGCACATGTTTGACCAGACTGTGATTGACAAGATGAAAGACATGGGACATGGTGTGGGGACAATGAAATATGCCTTAAATGTGGTCAATGGCATCTTTAAGCAGGACAGCTGTATCACTGCTGTGTCGGATGCCAGAAAGAACGGGGAAGCAGCAGGTTATTAGGGAACATCCCACAAGAGCAGGAGGTTTTGACACTGGAGTGCCGGCTGTGAAGGCTGGAGGGACTGGGCCACATTTTGTATCTTCTCATTGGTTTACTAGAGAATCAATCTGCTGGGACAGGCTTCCCTTAGCTCTCGATAATGTGAACTCCTTAAGGGCCAATTTAGTGATGGATCCCAATACAGCCCTATCTCAACTTTGCCCTCAGTAAACCACAGTCTTTGTGATACGTTGGCCTCAGGTTTGAAGGAGAAGTCATGTTCGATTTAGTGTTGCTGACAATCTAGTTAAATTGTaatagattttttgtattttctttttgtatctGTTCTCCAAAGCATAAGTGTTTGAACAGCACAGTTCTACAGAAATCTCATAATTAATTTTGCTCAGTATTTTGCCtttgtttctgtgatttttaattttaacattctATTCAGGGACCACACCTTTACTAGTGAAACATCAGTGACTGCTCTAGGTCGTTTAGCCATACAGAACATATTAAGGTGTGGAAGACCATAGGTGGAAACCAAACTTTGTGCTTGAGTATGTTTTACACTAGTCAGAAATGGGAACAATAAACGTAAACAATGGCAGAATGCTCAGATACGTACAAAATGACTTCAGGAGTGATTGCTGATCTTCATTGTTGGTTGACAACAAATCTCATGGAAATGctatatattgctttttttcctgcatactacatttaatatatattaatctaaaatagtacattttgaaaattactAAGTCTGCTCTCTTctttaaggtgttttttttagattttaggtTTTTTTGGGGTATGGGAGGGTAATTTGACTCATCCACTAATTGCAACTTACAATTTCAATAACAGATGGCAGCTTTTTATTTGACACCACTGGATCAGGGGAATGCTGTGATTTACCCTGATATTTTTTGTCTGAAGCAAGCTTACTAAGGCACTATATGTATTCTTCATGGTGCAGTGCAGTAAAGCATACGATAACACTGTAGAAGACAGTAAAACCATTTTCAAagtgcaattatatatatatgtatatatgtagtcTTTATGTAGTTGCTGCTGCAGACTGCATGCTGTTTATTAGAATAAATGGCTTTTCTGAAGGATGTGCTTCATTTCTCGACTTCTATGACTGTGACTTGGTGACATTCCATTCTACCTCTTCCTCGTACCTCAATCCTTGATGGTGTAATGCAAAACCACAGGGAACTAAATTGAACTGATTGCAGAGGAATTGTACAAGAGACTTGGGAATTTGGGGTTGTGTTGATCAGTTCCAGGTTCTATTAAGAATATTTGGAGGTTAATCGTGAACCTGAACATTGGTGTGTGTAAATCTCAATTTGAGTAGTCTTGGTTGAGATTGAGTGACCATGAATGGAATTGTTGCTAGTTATGGAGAAGACACTGCAAATAGTAGATTTCACATGTTGAATACTGACTACATGTGTCCTGGGCCAATGCATTTAATGCCCACCAGGCAGAGCTTTTTACAAAGAGGTATTTACAAATGAGAAATAATGAATCTGTGTAAAGCAAGGTAGTTCAAAGCCTCTTCTGTTTTGATGCTGTTATGAAAATATAGAAGCAGTTTTGTCAGtgaacaatttgaaaaaaatgtaaagactgTTTTTagaatacctttttttttaatgaatgtcttTCCTTGTATATACAACTTTTTTATATGTCAGAAACCGAATGTAAAGCTTTCATGTTTTTAGTTATTGTGAAGTTCTTTTTTACATTGTGCATATGGAGATGATCATATAAAACTAATAAAGAGTTTTTCAATTGTTCTTCACCTGATAAAGTCAACATGCCACTTTTTGTCCATAACTGCTTCAGGCTATCTACGGCTAAAACATCCTATATAGTAGGTGGACTCTGGCACAGACTCATTTTGGTGCCAGCAAATCCGCATAGCAACCCACACGTTAAATGAAGCTGGCCCGAATTTGGTAGAACTAAGCAAGCCATCTTAGCTGCGGATGCAGTCCAAATATTGACCACTGTGAAAACAGTGATTATGgtgaaaactttttttccccattctcGTCAAGTTAATCATCTTTAATCACCTGCTACAGgtagaaatgtgtatttactagaaatataatttacagtttttcacaattgcttgagcacatttgtccaaacagaattcactttttcaaaactatGAATAtgcactgaaactgaaacaaacacactgtcCAAAATGACATGTATCAAGActctcaaaacaaaatcaaatcagtccATCAAAACAGTATAATTTGTCATCTAATGAAAAGTTCTTTCCATTAGCAATTTCACAATGGAACAATAAACCTTACCTGTACAGACTGGAACGTAATCTCATATTCCTGTCAAAGGTACCTATACAGCTGTTTCATCCTTAGTTGGTGTCCATTCAACACCTGGTCAGTAGTAGCCAGAATGACACCATgtatattctgaaatatttc

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018752 True 4224 mRNA 0.41 12 19751614 19771954

Neighbor

gene id symbol gene type direction distance location
AMCG00018757 NA coding upstream 18839 19729815 ~ 19732775 (+)
AMCG00018751 NA coding upstream 37652 19706575 ~ 19713962 (+)
AMCG00018754 dgcr2 coding upstream 49823 19687584 ~ 19701791 (+)
AMCG00018744 NA coding upstream 67052 19678771 ~ 19684562 (+)
AMCG00018745 NA coding upstream 73675 19676622 ~ 19677939 (+)
AMCG00018753 NA coding downstream 33884 19805838 ~ 19851791 (+)
AMCG00018758 NA coding downstream 102374 19874328 ~ 19889731 (+)
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding downstream 187784 19959738 ~ 19966779 (+)
AMCG00018764 tmem120b,LOC107373355 coding downstream 254998 20026952 ~ 20035662 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding downstream 285884 20057838 ~ 20083148 (+)
G118304 NA non-coding upstream 172583 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 271658 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 278154 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 294631 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 1075388 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 222172 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 507334 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 530716 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 605334 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 667006 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 269522 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 517263 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 842658 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 911519 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 1030271 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 199185 19971139 ~ 19974730 (+)
G118557 NA other downstream 487423 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 600265 20372219 ~ 20374812 (+)
G118623 NA other downstream 742206 20514160 ~ 20514491 (+)
G118635 NA other downstream 820782 20592736 ~ 20593016 (+)

Expression


Co-expression Network