AMCG00018755 (ggt1a,LOC107753164)


Basic Information

Item Value
gene id AMCG00018755
gene name ggt1a,LOC107753164
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19778769 ~ 19792342 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018755
AACTGCAAATGTTGAATGTCTGCCTCAACATTAAGTGAGAGAGTTTTGAGGCGTGTTTCCTAAATCAGGAAATCAGAAGCAATTTTTCAATGCAAAACCCAAAGTCAGAAATTCTGTAGATCTATCAGGATTTCAGCTGTACTTGAGGTAAAGTTGCTTGTACTGTGGTCGTTGTGTCCCACTAAGAAACATTGATTCTTCAAGTAGATATCAATGACAGAGCCAGACTCCAGGGAAAGCTGAGTCCTTATTTCACAGTCTGCAGAAAAATGATCAGAAAGACAATCATCGTTGGCTTGGTGGTTCTGCTACTGGCTGCAGTCGCTGTCTTCCTTGGCATATTCTACGCGCTGGACTTACGGAACCCTTCAAGCCCTTCAACTGACAACTACTACTCTAAAGCCGCGGTGGCTGCTGATGCTGGGAAATGCTCTGAGATCGGGAGGGACATCTTGAAAAAGAATGGCTCTGCAGTGGATGCCTCCATCGCAGCATTACTGTGTGTGGGCCTGATGAATTCTCACAGCATGGGCATTGGAGGGGGGCTCTTCCTAACTATATACAACGCCTCCACAGGAAAAGTAGTAACTATCAATGGGAGGGAGACGGCACCTGCTGCTGCCACCGAAGACATGTTTGGCAATAGCACACAATTGTCCCGCACAGGTGTGCTGTCTATAGCTATTCCAGGAGAAATACGAGGCTATGAGATGGCACACCAGCACTACGGCAGGTTACCGTGGAAAGAGCTGTTTTTACCCAGCATTGAACTGGCACGCAAGGGGTTCCCAGTGGGCAAACCTCTGGCAAACGCCATCAGCAGTAACAAGAAAACCATCGAAGAGGACGAAGCTTTATGTGAAGTATTTTGTAACTCCCAGAAAAGGATCCTGAAGGAAAATGATATTATTAAATTTCTCAAACTAGCTGACACCTACCAAAAAATAGCTGATGAAGGCCCTGACGTATTTTACAATGGATCTGTGGCAAAGGACTTTGTAAAGGACATCCAAGAAGCTGGGGGGATCATAACTTTGGAGGATCTGCAAAACTACACCGCTGAACTGGACGAGAACCCATTAAAGATCAATATCGGAGACTACTCAATGTATGTCCCGGATGCTCCCTCCAGTGGCCCAGTGCTTGGGCTCATACTAAACATATTAGATGGGTATAACTTCACCAATGCAAGTGTTTCTACCTCAGAGAAGAAAACCCTCACATATCACCGCATTTTGGAAGCCTTCCGGTTTGCCTATGCCAAGAGGAGCAAGCTGGGAGATCCACGCTACCTCAATATCTCTGATCTCATCTACAACATGACCTCTGATTACTTTGCTGATGGAATCCGGAGTAAAATAACAGATGACACAACTCACCCTGTCAGCTATTATGAACCAGAGTATTACGTTCCTGATAGTCACGGGACTGCGCATCTCTCGGTGGTGGCAGAAGACGGGAGTGCTGTGGCCGCTACCAGCACCATCAACTTGTACTTTGGCTCGAAGATTCTCTCAAGGTCTACTGGTATACTCTTCAACGACGAGATGGATGACTTCAGCTCTCCCTACATCATCAACGGCTTTGACGTCCCTCCTTCCCCAAATAACTTCATTAAACCAGGTAAAAGGCCCCTCTCCTCCATGTGTCCTGCCATTCTCTTTGACAAAAACCACAAACTCAAAATGGTGGTGGGTGCATCTGGCGGGACAAAAATCACCACAGCAACTGCACTAGTCATCCTCAACTCGCTGTTTTTTAACTACGACGTCAAGAAGGCTGTCACAGAACCACGATTGCACAATCAGCTGCTGCCCAATACTACAGAGGTGGAGACGGACTTTGAAAAGAGTGTGCAGACTGGCTTGGAGCAGAAGAACCACGAGACCACCAAGATGCAGAAGTCCAGTGGGGCGGTGGTCCAGGCCATTGTGCGGCAGGGCGACAAGTTGTGTGCGGAGTCTGACTGCAGGAAAGGAGGCTATCCTGCAGGGTATTAACCCTTCCAACCAGACTGTACCTCCAAACTTATGCTCCGGTTGCGCCCTGGCCTGCGTTTGCAATGGACctctgctcctcttcctccaggaGCAAACAGAACCAAACATATTTTATGGAGTTGAGAATCTGAAACTGAACTGCATCAACCTTACGTGCCTTAAGGGAACCTTCCAGTATGCTCTTTTTCAATACCtccgtttttgttttgtatggccatttttttttaagtgttattgtatttaaagagGTGAGTTTTTGACAACTCGACAAACTCGTAATACCCACCATACAGACTTTCCTGCATTCCCAAGGCTAAGGATAGGAAcgcacacatttatttcagtgctCTATTGGAATGGGGATGGAGGTTTGATCAGCATGTTTTTACATTCACAGATGACTTAAACTCTCCTTTGTAATATCCATCTAGAAATATGTGCTTGAGTAAGGGATGGGTTTTTGACAGAGTTTCAGCTGGAATGAGAAGAGCGGGACATTCCTGCCACAAGACCTTTGTCTCCCTACATCCTCGAATTCCCCAAGGTGCCAATTTCTTGAGTGTCTTGGCTCTGGTCCCTCATTCTTAGCAGATTCTTATTATGcggtttggtttcatttttaaccTTTGTCCAGAATCAGGACTGAGGTCAATGCTTCATGAATATTAGCTATGTGATGctaaaaatagatatattttcatACCGTTTCATTATGTGACAGGCACACCTCTTCAGGAAGAGACTGTTGCACAGAGTATCTAATGTCTTGACAATGTTCCCATAACTTTCCTTTAAAAGGTTAAAGGTTCATAACCAAACTTTGAAGCCTTTATGATTTACTGTAGTGCATATTTAAGCATCAAAGAGAAAATCATTTTTACAGGAGAACTTACAGTATGGAAACCTATTGTgttgtatgtttaaaatgaccTGGATTGTACTGTACtcgtcttttttcttttacaatacAGAGTGAGATAGTTAATCACAACTCCTAGGAaattttttcaatacaaatgccattatttgtatatttgaagGTACACCTCAGAATAGTTGATGATCATATACGTCATCCTTTTTACCTCAGACTTTTGACAGGGCAGtggatttaattcatttttttgttttaataaaaaaagggcTTTGTGGATTTATACCTGAGACCGGTGGCAAGGCTCCATGTTGATTCTGTCTTCAGCTGTATTTCCCCCTTCTTCCTTCCTCctatcaaaataaaagagctgAACTCCAGAGACAAAGCTCAGGACAATGCACTCCAAGGCATACGTTTAATATAAAATCGGTTCTGCTGGgatgctgtgtgtgttcattgCCAATATCACATAAAATACTTagcatttaaatgtacactacattaaaacaaatactgctTACTTTTCCAGATAGGTTTGTGTTGCATAATACTATGAAATATTTCTTTAGGTTCGGTTTTATGTGTGTTCTTACCTGCTACCGTAACGTGGTACTGGCACGCAAacggatacattttaaataattgcataTAAAGCTTGAATTGTAAACAGTGgaaga

Function

symbol description
ggt1a Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in gamma-glutamyl transpeptidase deficiency. Orthologous to human GGT1 (gamma-glutamyltransferase 1).

NR:

description
PREDICTED: gamma-glutamyltranspeptidase 1-like

GO:

id name namespace
GO:0006749 glutathione metabolic process biological_process
GO:0003840 obsolete gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018755 True 3554 mRNA 0.43 13 19778769 19792342

Neighbor

gene id symbol gene type direction distance location
AMCG00018750 NA coding downstream 92406 19685365 ~ 19686363 (-)
AMCG00018747 NA coding downstream 104687 19655440 ~ 19674082 (-)
AMCG00018748 NA coding downstream 129503 19638160 ~ 19649266 (-)
AMCG00018749 LOC107741213 coding downstream 175483 19580402 ~ 19603286 (-)
AMCG00018741 ficd,LOC107741218 coding downstream 428869 19346052 ~ 19349900 (-)
AMCG00018756 NA coding upstream 72650 19864992 ~ 19871894 (-)
AMCG00018761 LOC106579932,LOC105014887 coding upstream 102508 19894850 ~ 19913272 (-)
AMCG00018760 NA coding upstream 131028 19923370 ~ 19957267 (-)
AMCG00018766 NA coding upstream 198991 19991333 ~ 20032507 (-)
AMCG00018765 NA coding upstream 244387 20036729 ~ 20050243 (-)
G118305 NA non-coding downstream 199737 19577014 ~ 19579032 (-)
G118299 NA non-coding downstream 246626 19499525 ~ 19532143 (-)
G118289 NA non-coding downstream 318260 19459926 ~ 19460509 (-)
G118266 NA non-coding downstream 442992 19333308 ~ 19335777 (-)
G118239 NA non-coding downstream 551335 19224672 ~ 19227434 (-)
G118440 NA non-coding upstream 201801 19994143 ~ 19994359 (-)
G118466 NA non-coding upstream 240868 20033210 ~ 20035657 (-)
G118469 NA non-coding upstream 264137 20056479 ~ 20057545 (-)
G118470 LOC107758578,LOC107746221,LOC107658592,LOC107689149,LOC107558115 non-coding upstream 266630 20058972 ~ 20059409 (-)
G118474 NA non-coding upstream 281009 20073351 ~ 20074161 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 279790 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 731052 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 933625 18837754 ~ 18845144 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other downstream 1031949 18745134 ~ 18746820 (-)
AMCG00018687 NA other downstream 1231401 18538418 ~ 18547368 (-)
G118434 NA other upstream 195332 19987674 ~ 19988168 (-)
G118477 NA other upstream 285746 20078088 ~ 20079882 (-)
AMCG00018788 LOC107579725 other upstream 646617 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 696593 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 811153 20603495 ~ 20606743 (-)

Expression


Co-expression Network