AMCG00018764 (tmem120b,LOC107373355)


Basic Information

Item Value
gene id AMCG00018764
gene name tmem120b,LOC107373355
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20026952 ~ 20035662 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018764
GGAGAGCTGAGTTCTGGCGAGGGTAGCGGTGGACAGCtgtggcggcggcggcggcggcggcggtgTGCttatggagggagagaggagagagagagggagagagaaagcggGGTCTGATACAATGTCACTACAGAGGTGCCAAGCTGAATGGGAAGAAATTGATCGGGAATTCCAGCAGCTACAGgaAACGCACAAAGTGTACAAACAAAAGCTTGATGAACTCACCAACCTCCAGACGATATGTAGCAATTCCATTAGCAAACAGAAGAAGAGTCTGAGTGACCTGAAGCACAATCTCCAGAGgtTGTACTTAAATTTGGTACTGGGGAATGTGAATGTAACACTACTCAGCAATCAGGCAAAATTTGCCTACAAAGATGAATATGAAAAGTTCAAGCTCTACATGACAATAATCTTGTTGCTTGGTGCCATAACATGCAGGTTCCTACTAAATTACCGgGTGACAGATGAAATCTTTAATTTTTTGCTGGTTTGGTATTACTGTACACTGACCATAAGGGAGAGTATCCTCATCAGCAATGGGTcaagGATAAAAGGCTGGTGGGTTTCACACCACTATGTTTCAACCTTTCTATCTGGTGTCATGTTAACATGgCCGGATGGATTAATGTATCAGATGTTTCGAAACCAATTTCTGGCATTCTCAGTATATCAAaGTTTTGTACAGTTTCTGCAGTATTACTACCAAAGTGGCTGCCTCTACAGGTTACGAGCTTTAGGGGAGAGAAACCATCTCGACCTCACAGTTGAGGGTTTCCAGTCCTGGATGTGGAGAGGACTCACCTTTCTTCTTCCGTTCCTGTTCTTTGGCCACttCTGGCAGCTTTATAATGCGGTGAAATTGTTTGGGTTGTCCAGCCATGAAGAGTGCAAAGAATGGCAAGTGTTCATGCTGGGCTTGACGTTTCTCATCCTCTTCCTGGGCAACTTCCTCACTACGCTTAAAGTTGTCCACCAGAAgtttcagaaaaacaaagacaaggtGAAGAAAAAAGAGTAAAGCCAGTTAATGCAGGAGCAGCTGGTGGCAGCGGTGGTGTAGAAATCTCTTCACCGAGACCTCGGGGGGTGGAGAAgatgaggaaaacaaatgttttgccGTTAAATGTGTCGATACTTTTTATATGTACAGTTTAAAAACCCAGCTGGAGGAAAGGGAGACATCTGCTGCTATCTGAAGTGACTCCATTACAACTACAACTAGAATCTCACTAATTTCCCCTAAGGATCATCATATccgttttttttaatactctgtGGACATGTATATTGAAGACCGGTTGGATCCCGTAAAACCTGAACCACTAAATAATTGATCTTGTGAGAATGATGAACTGTTCTTTGCTTGTTTTCCTTCCCCAAATCCTTTTTAACCTATATGCCAAGACCACGTTGcaccatttaattttttacaaaCGGATTTTGCAGATCTGCAGGTGTTAATTCACTCCATTCCACATTATTTAGTAGACATACCAGTAGATCCATATAACGGGAAACGGCAAAAGTAGTTGTCTAAAATGTTCCGATCTACAAACATCACAATATGGCTGGGTTGgtgtaaaacaaatgcaattatgGAGTTTTCCCCTTTGCTTTTTGTTGCATAATTCACTTTTGTCTCATtatcattaaatataacatatGTGGTGTTTTCCTTAGCAGTTTTAAGATCCCTCTGACCCTGTGATATTGATAGTACTGAGCTGATTTCCAATTTGGTTAAGGTGTTGTGTCCTGTTACATTTATGAGAAGCATCCGAATACAAAGGCAGGAGCTTTGTTAGATGCTTctgttgatttaaatgttataccCAGTGTAGTAAATGCCTGCATTGACAGTAATTGAGCAAGCCCGAATGGAAGTGATCACCCTGCTTAAATGAAAGTCAGTCACTACCACTGCAATTTCAATTTGCAGAATGAAAAGCAAGTTTGTAATTCCTGCCAAGTTAACCACTCGTATCGATTGTTATTATGCTGGGGTTTTTTTTCATGTGGTGACATTCCCAAAACTATAGCCCGCTGTTGGGATGTGATGTGTGGAATGACTCGTCTGATTTTGAATATCTGGTCTTTAAAACGTGATTGAATCATAAAATTGTTCTGCAAGCAGTATGGGTTCTAGAATGCTCTTGTGGGGGAATAGAGGAATGAAAGAACCACAGCTTGTGATTTCTCATGTAGAGACTTGAATTCACTATTCAGGATCTGTTTTCCTTGGTTATatattgttgttgatgttggttgtttttttaattaacactttcACAGCTACACGTTTTAATTTTGGTTGGTCGATCAATAAGAATATGCATATGCTTATTTTTATACAGAGGAAATAACTTTGCTAAAAGTCTGATATAATAATGCTGTCAGTTCTAAGGGATGGTCTTTGTTATTAGCCCGAgtatagttttgtatttattgtggaCATCTGCTGCACATGAAAGCTGCTAAACCTCTGAGGACAGTGTTAAGAGCAAAACTCTCGGGGTTACAAGGGCCTGTTGATTTAGTGTTCtgttttgtacatatttatgcCAACAATGTGACAAAGCCATATATAATGGACTGCCCATTCATCGTATAACGAAACAAAAGGTCATGTATACAGAGAATTGTGCATAATTTTTACCAAACTGCGATAGGGTGCAACTATTTTTTTGTAGATCATGCACTTCAGAGATCAAAATGATGTGAGAATTCAGTGGCAGGGTTTGAATAATGCCTTAATTTTCAGTAACCTGGATATCACTGCCCTACATTATCACGGtaatttttttctccacattaaaaaaatacatttgcaaatggtCACATCATAACCAGGCAAAGCTGTAGACTTCAGTTTTGTCCTTGTAGACACATTTGCGTTAGTGATTGATTCATAACTGTAGATTTAACTATGAAAGGGGAGTGTGATTTTACAGAATTGGGAAAGTCTGTTTGGGATTTTTCTGTGGTAAGGGAAcagcaatgtttatttaaagaaagctattttattttcactttttctatTTACAGAAGAACTAATACTAAGTAAATTGAGCCGCCACTACGCACAGCAAAGTTgacttttggttttgttgttttgcagcaGTGTGTTCCTGCTGAGTCTGTGGTGTGGTGTTCTTTTATTGACAAAggttgtgcttttcttttcagtgttaTGAGTTTTGCTTGCCCTGCAGAATGATTGTAGTGTGTGCTTGGATGTCTGGAGCTGTATTAAAAGagggatggaaaaaaaataacttggaTATTCTGCATATAAGGTCAAATTCTTCCATAAATCTCAAGACTTGGTGTAcattgctgtaaaaaaaaaaagtaa

Function

symbol description
tmem120b Predicted to be involved in fat cell differentiation. Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM120B (transmembrane protein 120B).

NR:

description
PREDICTED: transmembrane protein 120B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018764 True 3358 mRNA 0.40 11 20026952 20035662

Neighbor

gene id symbol gene type direction distance location
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding upstream 60173 19959738 ~ 19966779 (+)
AMCG00018758 NA coding upstream 137221 19874328 ~ 19889731 (+)
AMCG00018753 NA coding upstream 175161 19805838 ~ 19851791 (+)
AMCG00018752 NA coding upstream 254998 19751614 ~ 19771954 (+)
AMCG00018757 NA coding upstream 294177 19729815 ~ 19732775 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding downstream 22176 20057838 ~ 20083148 (+)
AMCG00018768 NA coding downstream 59463 20095125 ~ 20097742 (+)
AMCG00018769 NA coding downstream 63401 20099063 ~ 20111187 (+)
AMCG00018767 NA coding downstream 76241 20111903 ~ 20119142 (+)
AMCG00018770 mlxip,LOC107702943 coding downstream 85547 20121209 ~ 20151726 (+)
G118410 NA non-coding upstream 32623 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 447921 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 546996 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 553492 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 569969 19456142 ~ 19456983 (+)
G118566 NA non-coding downstream 243626 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 267008 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 341626 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 403298 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 455199 20490861 ~ 20491106 (+)
AMCG00018762 NA other upstream 52222 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 544860 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 792601 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1117996 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1186857 18827597 ~ 18840095 (+)
G118557 NA other downstream 223715 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 336557 20372219 ~ 20374812 (+)
G118623 NA other downstream 478498 20514160 ~ 20514491 (+)
G118635 NA other downstream 557074 20592736 ~ 20593016 (+)
G118636 NA other downstream 557704 20593366 ~ 20594139 (+)

Expression


Co-expression Network