AMCG00018765


Basic Information

Item Value
gene id AMCG00018765
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20036729 ~ 20050243 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018765
ACCTCGGCTGCAGGTTCCTGTGAGCTCTGGGGAGGTTAACCACATTCCGGAGTGACTACTTTTGGGCTTCCGGACTATATAGAGAAGACAGGCAGTATTGCAgctgtctaaaaaaaaaaaagaaacctaagAAGATATCATGGGATTATGATACTTTTACCTGGCTTTTCTGGTACTGTTCATATGGTCAATTTTTTCCATTCTACAAGGAAAAGCTCCATCATTCTTCAGCCACACGTGTAGGGGTTCAAATGAGTGGGCTCCTGCACTCCACGGACCACGGGAGATATATACATTTGGTTGTTCTGCTACTGCCGCTGATACTCAATTGATCGAAAAGCAAAATGTCCCACAATGGCACAGTACTGAGCAACGGTACCGAGAGGAGCCGTGACGAACTCAAAATCGTGATTGTGGGCGATGGAGGATGTGGAAAGACCTCTCTGCTCATGGTCTACGCCAAGGGAGACTTCCCAGAGAAATATGCCCCTTCTGTGTTTGAGAAGTACGTCACGACCATTCGATATGGAAGTAAGGACATCAATCTGAACCTTTACGACACAGCAGgTCAGGAGGATTACGACAGACTGCGACCACTCTCCTACCAGAACGCCAACCTCGTGTTGGTATGTTATGATGTCACCAACCCCACCAGCTTTGACAACGTCTTAATCAAGTGGTTCCCAGAGGTTAATCACTTCTGTCGTGGCGTTCCCATCATCCTGATTGGCTGCAAGACAGATCTGCGGAAAGACAAAGAACGTACCCGGAAGCTCAGGGCGTTAGATCAGGCTCCTATAACTTATATACAGGGCGAGGAGACAAAGCGTCAGATCAACGCAGAGCTCTACTTGGAGTGTTCAGCCAAATACAAGGAGAACGTCGATGACATTTTCAAAGAAGCCACCAGAACAGCACTGACAGCCATCAAGAGAGCCAAGCACCCACGGAAGAAGAGATCGTCGTGTGCAATACTGTGATACACGGTTCAGGGACTGCGTACAAACCCAGATGGACTGGAACTCTTTCTACTGCTGCACTGTTGTcgttgtttatttgtattcttcctGCTACAAGAGTAGCACATTTCAAaggttgattattttaattacatgtattatgATGTACAAAAGGACTTGGATACCAGGGTCATTCTCACCAGAATGATTTTGAAAGACCTTGGACATCACAAACTGAACAAGCACCGAGGTGTGGATGAGAGTCTTTTTTATCGCACATCATCTCTTTTGTACTGCACGTCTTGGGAATCTGTATTGACAGGAAAGAACTGGAATTTCTGGAAAATCTGCAAGGGAGGAATTCTGGGCTGCTAGCTTGTCAATCAGTCCcaattatcttttattttattattattattattattattattattattattactattattatgactCTCTCCACAATTGAAgcagaaaacattcaaattcacacaatgtatttttttagcaaacaaaaagcaactAGATATCATTTGATTGATATCAAAGCCAAGTGTGTTACATTCAACAAAGTGCTTCCGTCCCTCATTCCTTCAATAGCAGACTAAAAAccccaaatgagcacgatggttTGAAGGACTTATGTTTGTATCCAATTAGTACACTGAGACCATATCTGACTAAAAAGTGGATTGTGGGTCATAGCTGTGTTTTCTTCTCCCTTAGGGCCACATTGCAATCCACACACAGAAGCACGAATGTCAACAACTTGTCCCCTTACTGTAAACAAGCCACAAATTGCGATTCCTGTAACAAAATAAAGCCCTCTTGCAGATGCAGCTATAAGTCTCAAAATAAAGTCAATCATGACAAGTTACTGGATTTGTGATTTGCCTAGAGAGAtaagaaattatttattgttattggtaCTTACCGTCCTGCTTTTTAGATTCCAGGCCTGTGCTTTTTCAGGACTTGGGAGAGAGCTGACACCTCCCACTGACTCAACTCTATCTGCCTTCACTGCTGGTGTTGGGCCCCATGTTTTGACTTGTACCATTAACTGCTCCAGGGGGGTCTGAcacaattgttatttaaaacacaacatttccTAATATTTCCAAATGCCCCGTGGGAATGCTGTGGCTACCAGTAGCGTCTAACCCTGTCGTGGGAAACTAACCAGTCCAACCACATAATCTGGTTGGTGCACAGATGTTAGACACAAACTGGAATGTATAATTCAGTCTTGCTCGGATGGGAGGTGAAGCCAGTCACTTCTAAAAGATTCCTCTGCAGTTTAAGGGAGAGAAGATCACATATATATGGTCCTTGCATGCAGCAGGGTTTTCTGGTTTCAGATCTACCTGAGCGCCAAACTGAACTCATGCTTTGCTTGCATAAAACTAAAGTATGATTCTAGCATGATGAGCAATTGTATTCCGTAAAACCCTCTCCTGAGTCCTGGAATGACCACCCAGTTGGTTTGAAAGGGTTTCACTTTCAAATCGCCAACACCTTCAAAACTGATTTCTGTATTCTGAGTCAATCATGAATTCAGTTAGGAACTTAAATGGACTGAAAATCTGATAACATCACACTCTGCACTCCTTCTCCATGTGCTTTTATCCTCTCCTGGTGAAAAGTAGATCACACAAGAATGCAGGCTTTTCAGTTCAAGTGCCAGTTTTCCTGCCTCAGTTCTTTTCATGCTGACTTTAAAAACTCCCACAATCCCTCGCTTTGGTCCTCCATAGAAAAACAAGCAGTACCATTTGAATGGCTTTCCTGCTTTGATTGTTGAGGTGCTGAAAACTGTTGTTTCTAGCAGCAGACTTGTTTAAACAGCCTTTCCAgggtttgtttctttgatgCCAGTGTGCAGCTTCACCAACACAAAATGTGCAACTTTTGTACACTTACACAGCAGTATCAGTGAAGTCCAGCAGTGCCAGCTCAAAGGTTTGTACTGTTTTGGGCAATCACATGGAATCTCGTGACACTCTGGACAAAAGACGAGTGTTGAAACACGGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018765 True 2993 mRNA 0.43 5 20036729 20050243

Neighbor

gene id symbol gene type direction distance location
AMCG00018766 NA coding downstream 4222 19991333 ~ 20032507 (-)
AMCG00018760 NA coding downstream 79462 19923370 ~ 19957267 (-)
AMCG00018761 LOC106579932,LOC105014887 coding downstream 123457 19894850 ~ 19913272 (-)
AMCG00018756 NA coding downstream 164835 19864992 ~ 19871894 (-)
AMCG00018755 ggt1a,LOC107753164 coding downstream 244387 19778769 ~ 19792342 (-)
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding upstream 36897 20087140 ~ 20094506 (-)
AMCG00018777 vps33a,LOC106585293 coding upstream 168134 20218377 ~ 20225057 (-)
AMCG00018780 NA coding upstream 178928 20229171 ~ 20279538 (-)
AMCG00018778 NA coding upstream 253521 20303764 ~ 20309717 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 262942 20313185 ~ 20321631 (-)
G118466 NA non-coding downstream 1072 20033210 ~ 20035657 (-)
G118440 NA non-coding downstream 42370 19994143 ~ 19994359 (-)
G118305 NA non-coding downstream 457697 19577014 ~ 19579032 (-)
G118299 NA non-coding downstream 504586 19499525 ~ 19532143 (-)
G118289 NA non-coding downstream 576220 19459926 ~ 19460509 (-)
G118469 NA non-coding upstream 6236 20056479 ~ 20057545 (-)
G118470 LOC107758578,LOC107746221,LOC107658592,LOC107689149,LOC107558115 non-coding upstream 8729 20058972 ~ 20059409 (-)
G118474 NA non-coding upstream 23108 20073351 ~ 20074161 (-)
G118475 NA non-coding upstream 26582 20076825 ~ 20077042 (-)
G118476 NA non-coding upstream 27033 20077276 ~ 20077892 (-)
G118434 NA other downstream 48561 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 537750 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 989012 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1191585 18837754 ~ 18845144 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other downstream 1289909 18745134 ~ 18746820 (-)
G118477 NA other upstream 27845 20078088 ~ 20079882 (-)
AMCG00018788 LOC107579725 other upstream 388716 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 438692 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 553252 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 594642 20644885 ~ 20678437 (-)

Expression


Co-expression Network