AMCG00018768


Basic Information

Item Value
gene id AMCG00018768
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20095125 ~ 20097742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018768
agttgctgctgttgtgtatACCAGAAAACGGCACTGCTGGGAAGATGacggaggaaaaaaacaacaagaacttGGGCATAACTGTTGAAGATGTTCAGAATCTGATCAAAAAGAAAGACGAAATTGAAGAGCAAATCAAAGCATACTATGACGTGCTAGAAGACCAAAAAGGTGTGGGAATGGAAGGTCCGCTGGTGGATGAAGAAGGCTACCCTCGAGCAGATGTGGATGTGTATCAGGTCCGTACAGCGAGGCACAACATCTCCTGTTTGCAGAATGACCACAAGGTCTTAATGCTGCAGATCGAGGAAGCGTTACACCAGCTGCACGAGCAAGAGAGGGCGAAGAGGGACAAGGCGGAAGTGCGGCCCGAGGCCAGGGAGCCGGAGAACAGCCTGCCACAGCCCTTTGCCAGGGTTGATACTGTCACCCCTGGCTCCCCCGCCAGCATGGCTGGGATACATGTTGGGGATGAGATCATTGAGTTCGGCACAGTGAATTCGGTGAACTTCCAGAACTTTCAGAATATCGCCACGGTGGTCCAGCACAGTGAAGGGAAACCTCTGAGCATAACAGTGCTTCGCAATGgacaaaaagtacatttaggGCTCACCCCCCAGCGATGGAGTGGAAGAGGTCTGCTGGGCTGCAACATCCTGCCTGTACGCAGATAATATGGCTTGATCGTCAAGACAGCGTCACCAGAAAATGGAGAGATGAGCAGTGTGCATCGTGGCTGTAGTGGGAGCTGTAATGGGGTTTCACAGGGGACCTTTTCCTGCAGAGGATCAGCAATGGTGTTGGTGTGATTGCTGTACATATGTATTGCTCTTCCTTTGGCTAAACCCATTGAATGGATAGACAGTGTTCAGGGCTGAGGTGCTCTTGAGGAATAAACAATTGAGGTTCAAGATCTGTCCCCAGTATCCCACACAATGAGATTCAATATTTTGCTGTTTCATGTGTTCTACATGAATAATAACAGGTTGGTCTgtgatatttttacatttgctttaagTGGAAGTAACCTCAAGACAGTATATCATTCATACTGATGGAAGTATTTGAAGATTGCAGAATAAAGTTTTTCACTTTC

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06693 PSMD9, RPN4; 26S proteasome regulatory subunit N4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018768 True 1096 mRNA 0.47 6 20095125 20097742

Neighbor

gene id symbol gene type direction distance location
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding upstream 11977 20057838 ~ 20083148 (+)
AMCG00018764 tmem120b,LOC107373355 coding upstream 59463 20026952 ~ 20035662 (+)
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding upstream 128346 19959738 ~ 19966779 (+)
AMCG00018758 NA coding upstream 205394 19874328 ~ 19889731 (+)
AMCG00018753 NA coding upstream 243334 19805838 ~ 19851791 (+)
AMCG00018769 NA coding downstream 1321 20099063 ~ 20111187 (+)
AMCG00018767 NA coding downstream 14161 20111903 ~ 20119142 (+)
AMCG00018770 mlxip,LOC107702943 coding downstream 23467 20121209 ~ 20151726 (+)
AMCG00018773 NA coding downstream 91848 20189590 ~ 20197104 (+)
AMCG00018772 NA coding downstream 104686 20202428 ~ 20207454 (+)
G118410 NA non-coding upstream 100796 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 516094 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 615169 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 621665 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 638142 19456142 ~ 19456983 (+)
G118566 NA non-coding downstream 181546 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 204928 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 279546 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 341218 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 393119 20490861 ~ 20491106 (+)
AMCG00018762 NA other upstream 120395 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 613033 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 860774 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1186169 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1255030 18827597 ~ 18840095 (+)
G118557 NA other downstream 161635 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 274477 20372219 ~ 20374812 (+)
G118623 NA other downstream 416418 20514160 ~ 20514491 (+)
G118635 NA other downstream 494994 20592736 ~ 20593016 (+)
G118636 NA other downstream 495624 20593366 ~ 20594139 (+)

Expression


Co-expression Network