AMCG00018770 (mlxip,LOC107702943)


Basic Information

Item Value
gene id AMCG00018770
gene name mlxip,LOC107702943
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20121209 ~ 20151726 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018770
ATGGAGCTGCGACCGTGCCGCCGGGCCCCGGTGATCAAGCCTGAACATGACGACGACTCGGACGCCGAGGAGCCAAACCTCGGGCTGAAGAAGTCGGACGGGCAGGAGCCGCAGATCATCCACAGCGGCCACTTCATGGTGTCTTCCCCGCACAGCGAGCACCCTCCCAAGAAGGGCTACGACTTCGACACGGTCAACAAGCAGACCTGTCATACGTACTGCTTCGGCAAGACCAGCACCTCTCACCTCTCCATAGACGCCTCCCTGACCAAGCTGTTCGAGTGCATGACTCTGGCTTACAGtGGGAGACTGGTGTCACCGAAATGGAAGAACTTTAAAGGTCTGAAGCTGCTGTGGAGAGACAAAATTCGCCTGAACAACGCCATCTGGAGGGCTTGGTACATGCAATATGTGGAAAAGAGAGACAACCCAGTCTGCCACTTTGTTACACCGTTGGACGGTTCTGTTGATTCAGAAGAACATCGCAGACCAGAGGCAATAGCCACAGAGGGCAAATATTGGAAACGAAGAATTGAAATCGTTATCAGAGAATATCACAAGTGGCGAACATATTTCAAAAAACGGTTACAGAAGCACAAAGATGAAGACCTCTCCAGCCTTCTCAAGGATGAGGAGGTGGGTGTCAGGCGAGCGAGCTGGAAAAGCCAGGATTCTCCTGTCCCCATGGAGATGGACCAGCTGTTCGACATGGACATGCTCATGTCGGAGTTCTCTGACACGCTGTTCTCCACCATCGCCTCCCACCAGGCAGTGGCCTGGCCCAACCCCAGGGAGATAGatttatttcatattgttcGTCAGCCTGCCTTATCATTACCTTCCCTATCAAACAGCAATTCTCCAACTCAGGCTTCCATTCTGCAACCTGTGAGCCTCTCCCCTGATCTCCCATCTGTGAGCCTGGACCACGAGTTCATTTCATCTCCGGGAACTACCTCCATCGTCACGGCTACGCCCAATCACAGCAGCGAGAGCAGCACTGCTCCAGACTCTACTTTCGGGCACAACTTTTTACCTCTGTACTCTGTGCCGGTGTCGGCAGGCGACACCAGCGCATCGGATCCCCCTCGGACCTCCCTTCACCCAACAGCCCAGAAGACCAGTGTGCCTCACCCCGGGCTGGCTCCGAGCAGCCAGGCCACTGCCCCCACCACCGTACAGACGCCCAAGTTTGAGTCGGTCATTACACACACTGCCTCTTCAACTGTGACGCACAGCGCTGCAGCCACCACCTTTGGTCAGAGCCCGGGTTTCACCCTGCAGGCAGTGCAGCACACCAGGGTGCCTTTGAAAACTGCACTGCAGCCCAGAGTGCGGCAGCCCCTGCCGCCCACGGCTGCCAGGCAGACCCCCCAGACTTTTGCGCTCCCAAAACCAATTAATCCTTCAAGCTCAGGAAAAAGGACAAAACACCTGCAGAAAATTGTGCCTGCAGGCCCCAAACCCCTTGCCTTTTTTACTCCAGGTAACCGAAGCCCTGATCCCTTCTGGTTTGGTGCAGgAACAAAGGTGACGTGCTATATGAGggtgtatttttgttcagttcCTATTCCAGGGCAGACCAGCGCCGTGATTGTAACCCCTGGCCCAATGAAAGGAGAGGGGGTGCCTACCACTGGTGTCGTTATTACCCCAACTGCCATTGGAAGGAGTACCGGGCTGCCAGAGTTCCACATATTACAGCAAGCGCAGAACTCTCCGCAACTCATCATCCCCAAAGAAGAGACAACGCCCTCCACGGCGTGCAGGAAACAGGCCTCCTCACCCACAGCTGTGCGCGACGGCCGCAGCTCTGGCAAAGCCTCCCCGTGTGCCTCCGAGCAGAGCACCAGTCCCCAGTCCCCACTCAACACCTCCACCGGCCTCTCTAAGCTTGACACACCGATCGGAATGAAGATCAGGAGAGGAAATCACATTTCAGCTGAACAAAAGAGAAGGTTCAACATCAAGATCGGCTTTGAAACCTTAAGCAGTTTAGTATCAACATTGAAGTCTCAGTCCAATGCAAAACCGATCAGTAATGCTGCCACCCTGCAGAAGACGGTGGAATACATTGCCAAGTTACAGCAGGAGCGGCTGCAGATGCAGGAGGAAGCCAGACGTCTCAGGGAAGAAATCGAAGAGCTCAATGCTTCGATCAACACTTGCCAGGAGCAGCTCCCAGCTACAGGGGTCCCTATAACCCGGCACCGCTTCGATCACATGCGAGACCTGTTTGATGAGTATGTGAAAAATAGAACTCTTCAGAACTGGAAGTTCTGGATTTTCAGCATTATCATAAAGCCGCTGTTCGAGTCCTTCAATGCAATGGTTTCTACGACCAGCACAGAGGAGCTGTGTCAGACCACCCTGTCCTGGCTAGACCAACACTGCTCCTTGCCTGTTCTGCGACCAATGGTGTTACGTACACTTCGACAGCTCAGCACCACAACCTCCATCCTCTCCGACCCCTCCCACCTGCCAGAGCAAGCGACGCAAGCTGTCACCCAGGGCAACACACAGACTGGAGAGTCTTAGCCGAGAGCTAAACTGGAGAGAGGGGACTGCTGTCGTTATTTCTTCCCCACCTGAGAGAATGGACATCTGATTCctcctgccacacacacacacacacacacacacacacacacacacacacacacacacacacagtcccagGAGCCACTGCCATGTGCCGCCCGCCTTGTGCAAGTGTCCACTAGAAGTCCACTGTTTCTTGGCTGTAGCTGACTGAAGGACTGCACTGGGGCTGTCAGTGCATTGCACCTGCATGTTTTGGGGCAATAGTCTTCCTCCAGGCAAGTTTGAGGATCCTGAGAGCCAAGGGAGACACTTCAGTGAGGAATTTTCACATGGCTGAGACAATCTGAGGtgatttattctttctttccctggttttgttgtttctgctcATACAGATCTCTATAAAACCCTGATCTGCGAAGCTTATGGTGAAGGAAACccacaaggggaaaaaaaaaatccacatcaGTTCTCCTGAGTCCGCCGTCCGTGGACACCTTCCTGGCCGAAGCCGCAATTTTCTGATGCCTGTTGCAATAAGCTGTTGAATACAACTACATGTCTGTTACCTGAATAAGTCCCTAAACATATGTCACAAAAACGGGAACCAGTATTCATCTCCtaactctttttcttttcttgatcTGTAATTGTTCATACTTCTTAATATAGCACCGCCTTGCATCATGGTCCTTTTCATTGTGACATAATGACATTATGCTGTTGCGATAAACGCACATCACTTTTTGTTTATAGAGCAGCCCTACTGAAGCAGTAGATGTATTTATGCTTGAGAGCTCAGGGATATATACACGGGAGCTTTATCTGAGGTAATTCTAccaaataaaaaaggagaaactgaaaaatcaGGGACACTTGACTGAAGACACGTTTTGATATTTTTGAGCAAGACCCATGTCCAACATTTTGGGGTTttccttcattttgttttgtttgttgttttttaatttaagtattggtcgatttatattttgctttttatgcTCTTCCATGTTCCGTTTTTTCGCAGTGaaatatcttgtattttattgttctgGCAGTCCTGCAACACCAAATAAACCCTATTTGTGAAAGAGGCTTGCAGCTAGAAATGTTGTAGGGTAAAAAATTAATCAGCTTCTTAATTGCCAGATCAGTAATTAACTTTTCTCACCTAACTTTTAGAACTGCTCTTGAAGCATGTAATAGgcaatgttttttatgtttttggttttcttttaatatgaGATTCAGGTTAAGTTTGCACTGGGTGTCTACAGGTCCTAGGGTTCAGATTGCTCTTCAGTCCTTCCAGTGTGCATCTTAACCACTAACACATAATGTATGCTTCCTATGCTGTATTGTGTGGTTCAGCTATTGTTTCAATCTGCAAAAAGCAAGTCAGTCATCTGTACAAACACTGTCTCTCAGGAAATATGGGGAAGTTTTTTTTGTGCTGTCTTCACCAGGAATTCCCAATTGTTCTGATCTCGCGTGGTTTATGCCCGCTTGGACGAGCCAGCTTTTCATGAGGTTTACATTTAATGGGTTCCTTGTCTCGATGTGATCGATATTACTTACATAGTCCCATGGtgacataatttacatttaaacatgttcaACCCAGTTTGTTcatatgtaaatacatacttcattgaaatgcacttttttttaataaagaaaaaatgacaATGTAGCCattaagcttaaaaaaaaaaagtaaagtgaatggaatgctttttatttttgcatacttTTAAAGGGTTCACAGTCAAAGCTTTTAAA

Function

symbol description
mlxip Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human MLXIP (MLX interacting protein).

NR:

description
PREDICTED: MLX-interacting protein isoform X3

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018770 True 4329 mRNA 0.48 16 20121209 20151726

Neighbor

gene id symbol gene type direction distance location
AMCG00018767 NA coding upstream 2067 20111903 ~ 20119142 (+)
AMCG00018769 NA coding upstream 10022 20099063 ~ 20111187 (+)
AMCG00018768 NA coding upstream 23467 20095125 ~ 20097742 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding upstream 38061 20057838 ~ 20083148 (+)
AMCG00018764 tmem120b,LOC107373355 coding upstream 85547 20026952 ~ 20035662 (+)
AMCG00018773 NA coding downstream 37864 20189590 ~ 20197104 (+)
AMCG00018772 NA coding downstream 50702 20202428 ~ 20207454 (+)
AMCG00018774 NA coding downstream 159432 20311158 ~ 20312556 (+)
AMCG00018775 NA coding downstream 170692 20322418 ~ 20348942 (+)
AMCG00018784 NA coding downstream 231403 20383129 ~ 20398337 (+)
G118410 NA non-coding upstream 126880 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 542178 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 641253 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 647749 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 664226 19456142 ~ 19456983 (+)
G118566 NA non-coding downstream 127562 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 150944 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 225562 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 287234 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 339135 20490861 ~ 20491106 (+)
AMCG00018762 NA other upstream 146479 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 639117 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 886858 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1212253 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1281114 18827597 ~ 18840095 (+)
G118557 NA other downstream 107651 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 220493 20372219 ~ 20374812 (+)
G118623 NA other downstream 362434 20514160 ~ 20514491 (+)
G118635 NA other downstream 441010 20592736 ~ 20593016 (+)
G118636 NA other downstream 441640 20593366 ~ 20594139 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030769 mlxipl coding NC_007116.7 CM002889.2 3819190 ~ 3839285 (-)