AMCG00018772


Basic Information

Item Value
gene id AMCG00018772
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20202428 ~ 20207454 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018772
CCCACGGCAACGACCTTCCCTTTAACGAGCCGGGGTCAACGCGGTCGGCGTAGTCACCCCAACTAGCTGGCCAGAGAGATGTGCATTagaaaatattagaaaaatatgaacGGGCTgctggaaatggaaagaaatgctCCTAAAAATGAGTCCGGTTTCACGTCTTGCCTCGTCTCTTTTCAGAAGGTCGAAGTCATGAGGACCCTCTATATATCTCGAAGAGCACGCTTGTCTGCCTGGACAGTCCTCTTGATTTCAGGGTTTTGCATCCTAGTCATGAGTGTACAATTCAACTTCACTGTGGTACCAGCATCAACAGATGGAACGCAGAAACAGATTTTTAGATTTTGGAGACATAGCTCTCCTGCAAACCCTGCCAGTGCAGCATCGCAGCCCCCGGACATCAATTTCAAATGCGAGGGAAATGTCAGCAACCAAGACATCCCAGAAAATCTCCCTGAAAGCCACCGCGAGTTcctaaaatacaaacactgtCGCAGATTCCTTACTCTGAAGAAGCCCAAGAAGTGTGAGGACAACCTTCGCCTCTTGCTGGCAATCAAATCGACCGCCATTAATGTGGACCGGAGAGCAGCCATCAGGAACACATGGGGCAAAGAGGTGGTCATCAGGGGGAAGAAGGTCAAGCTTGTGTTTCTTGTTGGCCAATCGTCAGATACAGTCAAAGGCAAGCCCCTCCACCAGCTCCTGTCGTATGAAAGTAGGGAATTTGGAGACATCCTACAGTGGGACTTCGTGGACAACTTCTTTAACCTAACCCTAAAGGAGATCCATTTTCTATCGTGGTTCAGCCAAGAGTGCCAGAGCGCAGAGTTTGTGCTGAAGGGGGACGATGATGTCTTTGTAAACACAGGAAACATTGTGGAGTACATCCGGGATTTCAGTCCCGAGGCCCACCTTTTCGTTGGCGATGTCATTTTTTCAGCCTTTCCCATCAGAAACGACAAAGTCAAGTACTATATACCCACGGAAATGTACTCTGCAAAGCACTATCCGCCGTACGCAGGTGGTGGAGGGTATGTCATGTCCAGGAAGACTGTGATAAGTTTAGATCGTGCTGCGCAAGACATTGATCTTTTCCCCATCGATGATGTCTTTGTCGGGATGTGCCTCGAGAAGTTGAACGTGACTCTGGTTTTCCACCACGGCTTCAAAACCTTCGGCATCAAGAACCACGTCAACCCCTTCGACCCATGCATATACAAGGAGCTGATGATTGTTCACAAACTGAATCCCACAGAGATGTGGATCATGTGGACTTTAGTGAATGATGAAGACATGAAATGTGCCAGGAATATAGTGGTGAAGGGCTGAAGCTCAGTTCAGTGACAGGGTTGCAGTTGTCTTCCTTGTGTTTCCAGGCAGCCCTGACTATTTATTTgggggacaaaaataaaacgtttcaattgtattttgttgttgtggttgttatgTTTTAACCTGGGGCTGTCTGTGGTGATGTTCGAATACGTTATTGGTTCACGGGCTTATATTAATCTTTAAGGGGCTGAATGATGCCCATAAGGGTGGCCATTTAATAGCCTGAAAAACGTATTACAACCAGTGATTTTTCCTGGCTTTGTTAAAGGATCGAATTCACCTATATGATTGGCAACACTCCTTGCTAGAAGTGCCAAGTCACACGTTTGGGCCAGACTTTATGATGTGCTAATTGAGGTGCAATGGATGGATGCAAGTGATGTCCCTTTTGTCGCAATCAGAGGTGCTGTCCTCACTTCACCCTACTGATTTCTGTTAACAGTTTGaacttttaatttgtgttctgaAACTCTCCAGGAGAGTGAGTTCAGTCCTGCCTCTAATCTCTTCACTTTGTATGTGTCTTTATATTGTGTGTCCCTTGTTTTTCAAAGCCATCTGGTAAATCAGTGTACATACAATGTGATTAAAAGTGAGGGGTTGAgcaaaaatgataaatatttatgaagAGCTTGCCTTCATTTAGTTGGTGCTTGTAAGTATCAATGTATGTGAATGGTAGGCTTGTTACTGATACAAATGTTGCCAGAAACTCTTGCCACTTTGCCATCTTGACAACCAAGTTCTCATTCACCGATTTAGAATTAGAATGATTTGAATAAGCATTGACTATAGTGATACACAATCAGAGTGTATACATTGTGTAAATGCTATTAACTCTTTATGTTCTTTAATGTAAAATAGTAATTTCTGTGCAATAAGGTGGGGGTAAAACCCTGCTTCTCAAGTAATACTGTTTTAGTCACCTGAAGCTTTGCTAACAGACAAATCTACATTTTTctaaaaaatcaaaaacatacaaatttaaattgggGATGGTTATTGTGACAATCGGCTCCTCTGTTACGGCTTATATCTTTACTGTAGTTATTTGGAGAGGAGGATATGGCTTTCAATAAAGCGTCCTTTTAGCCAACATTCATCTTTAGAGTAACTTTTCAGAGACAATCTTCACATTTCTACTGTAACGTAActataataatgttaaatgaaTTGCTCTCTTGGCATGATTAAGCAAAACTGATGTGCTTAAATGTCACCTGAGCAGTaccacttaaaaaacaaaaatgtttgctttgtcCTGTTCCGGGACTGCAGACTCTTTTCATTGCTCAGGGAGTGACTCCTTTccctaaaacaaatgtatctataaattattttgttattgttaattaaaaatagacctttgTGATGTTGTAAAGCAAATAAAGGTTACAGGAATAAAGGGTATTATCTTTATAACAATATGGAAATGTGTAAAGAATTGGACAATCAAAGGCTTTTCTACTGACCtgcattattttagtttctctGCTGTTGTGTGTGGTTATTTGTTTCCCATGACAGCTGGGTAAGGTCTGAGTCATGTAGCCACATTAACAGGAAATGGAAAGGACTTATTTATCAACTTATTTTACAACTGCAGAACACGAGTGCTACTGTGCATTACCATGtaacatttgtaatgattgacTGGATTAAGTGGTTCCAGTTTCTGGGTGTTTGAAactctacaatatatttaatctcCTTGAGTATCTGTGTTGATTTGTGCCATGTTTTTGGCACTAGATGGAAAATAACATTGAGAACCACTATTTTTCCTATTGATAGGACTTttagaaataacaaatgcaCTAGCGTGATTGTTGATCGTGATCAAACCGTAAGACATGTAGCTGGATTAGTGTATTTTCTCACAACAAGGTTCAACTGTCAACTCCAGGCCTTCTGAGATGAACATGAGTATCAAAGCAATAAAGATGTTCCAACATATAACTGATTCTGTGAT

Function

GO: NA

KEGG:

id description
K07971 B3GNT4; beta-1,3-N-acetylglucosaminyltransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018772 True 3313 mRNA 0.41 2 20202428 20207454

Neighbor

gene id symbol gene type direction distance location
AMCG00018773 NA coding upstream 5324 20189590 ~ 20197104 (+)
AMCG00018770 mlxip,LOC107702943 coding upstream 50702 20121209 ~ 20151726 (+)
AMCG00018767 NA coding upstream 83286 20111903 ~ 20119142 (+)
AMCG00018769 NA coding upstream 91241 20099063 ~ 20111187 (+)
AMCG00018768 NA coding upstream 104686 20095125 ~ 20097742 (+)
AMCG00018774 NA coding downstream 103704 20311158 ~ 20312556 (+)
AMCG00018775 NA coding downstream 114964 20322418 ~ 20348942 (+)
AMCG00018784 NA coding downstream 175675 20383129 ~ 20398337 (+)
AMCG00018783 NA coding downstream 200619 20408073 ~ 20433655 (+)
AMCG00018789 NA coding downstream 250511 20457965 ~ 20463349 (+)
G118410 NA non-coding upstream 208099 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 623397 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 722472 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 728968 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 745445 19456142 ~ 19456983 (+)
G118566 NA non-coding downstream 71834 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 95216 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 169834 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 231506 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 283407 20490861 ~ 20491106 (+)
AMCG00018762 NA other upstream 227698 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 720336 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 968077 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1293472 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1362333 18827597 ~ 18840095 (+)
G118557 NA other downstream 51923 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 164765 20372219 ~ 20374812 (+)
G118623 NA other downstream 306706 20514160 ~ 20514491 (+)
G118635 NA other downstream 385282 20592736 ~ 20593016 (+)
G118636 NA other downstream 385912 20593366 ~ 20594139 (+)

Expression


Co-expression Network