AMCG00018774


Basic Information

Item Value
gene id AMCG00018774
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20311158 ~ 20312556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018774
ATGATGATTCCTCTGTTTCTGGGggctgatttattttcaaaaacaggCATCCGAATAGAGAACCATACAAGATTTCATGCCAAATTCTCAAAGAAAGGACTGGCTACTAAACTGAATTTTTCTTCCGATTTTCGAGTTCATGGAATGAGACTTCCCAGCGGGACCAACAGCCTTTGGTTCTACAGCGTTCAGGGGCTTTTCCGTGTGGCCTTTGAAGTGTATAGCAAGCAGGAACAGCTCTCTGTCCTTGAAACATTTCAGGACCTGTGGAAGTCTAGAATAAATGATGGACCCCTAAACCCAAGTTATGATTTGAGTGTTCAACTGAATATTTCAGAGCCCTGCAACCCCATTGAAATGCACAATCAAGACTGGATGCACAGACTTCAGACAGGAACCTACGCAGCACAGAATTCCTATGTTCTAGAATCAGAAACTATAGCCGAGTCCAATCCAGGTACTCCATGTTGGGCAATATCTTCCATTTCCTCCACAGTTGATCACAACTACTGCAGTCTAGAAAACGGGGACTCGTTAAATCCTTCACTTCTGTCTTACCGGGTGACTCAGAAAATCAAAAGCTTAGACAATTTGTTTCAGAGCTATGCAAAGGATATGCGAAATGAACAGAACGAAGTGATCCTACTTCTTTTGGATCACATAGAGCAGTATGTCAACCAGGaattcaatgaaaataaattggcaGATATCGTGTTACagattttaaatacaacatataATCTGACCAAGGACCAAACCCCCGGAGACATGAATTCAGTTTACAACAGCTGCTTGCTTTCTACAATAGGCAGTTGGTTGGGACAGCAGTTCAATGTGGCCAATGCTTGTATTAGCAAACAGATAGAGGGATTTAAACTAAGCCACATTGACAGAATTACCGATCTGCCACCAGCCGAGGAGCTGGTCAGCCAGTTGTTTCCAGAGTCCATGAAAATACTGCTAATGAACTGGATGGGATTGAGTGACGCCACTGCGGTGTGGAAACGGCACAGCGAATACCCTATACTGCTTCTCATCCTAGAATTTGCCAATCACAACCTCATCACTGGAGTTGCACACGTATTATACTCAagtttaatatgcaaataa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0016592 mediator complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018774 True 1110 mRNA 0.43 3 20311158 20312556

Neighbor

gene id symbol gene type direction distance location
AMCG00018772 NA coding upstream 103704 20202428 ~ 20207454 (+)
AMCG00018773 NA coding upstream 114054 20189590 ~ 20197104 (+)
AMCG00018770 mlxip,LOC107702943 coding upstream 159432 20121209 ~ 20151726 (+)
AMCG00018767 NA coding upstream 192016 20111903 ~ 20119142 (+)
AMCG00018769 NA coding upstream 199971 20099063 ~ 20111187 (+)
AMCG00018775 NA coding downstream 9862 20322418 ~ 20348942 (+)
AMCG00018784 NA coding downstream 70573 20383129 ~ 20398337 (+)
AMCG00018783 NA coding downstream 95517 20408073 ~ 20433655 (+)
AMCG00018789 NA coding downstream 145409 20457965 ~ 20463349 (+)
AMCG00018782 arl6ip4 coding downstream 164570 20477126 ~ 20484929 (+)
G118572 NA non-coding upstream 8200 20302670 ~ 20302958 (+)
G118566 NA non-coding upstream 11328 20279288 ~ 20299830 (+)
G118410 NA non-coding upstream 316829 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 732127 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 831202 19479691 ~ 19479956 (+)
G118601 NA non-coding downstream 64732 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 126404 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 178305 20490861 ~ 20491106 (+)
G118620 NA non-coding downstream 187118 20499674 ~ 20500210 (+)
G118621 LOC107554528,LOC107654556 non-coding downstream 188394 20500950 ~ 20501433 (+)
G118557 NA other upstream 50218 20259377 ~ 20260940 (+)
AMCG00018762 NA other upstream 336428 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 829066 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 1076807 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1402202 18894335 ~ 18908956 (+)
AMCG00018781 denr other downstream 59663 20372219 ~ 20374812 (+)
G118623 NA other downstream 201604 20514160 ~ 20514491 (+)
G118635 NA other downstream 280180 20592736 ~ 20593016 (+)
G118636 NA other downstream 280810 20593366 ~ 20594139 (+)
AMCG00018792 LOC106928543 other downstream 289400 20601956 ~ 20603315 (+)

Expression


Co-expression Network