AMCG00018775


Basic Information

Item Value
gene id AMCG00018775
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20322418 ~ 20348942 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018775
GATGTGGAATGACGTAGAACTGTTGACAAGTGACGACACAAGCTCAGGTCGGCTATGCATCGACTCCAGACAGGAGTGCGGCAGTGCCTTGTATCAGGTGGACACTTTGGTCAAAGTCTCTTCGTCCGAGAAGGTGCGGTCCAATCCTAACCTGTATGCCTGCAACAGCTGCCATGGCACTATTCTTGTTGCAGATAAAACGGTGGTGCTTTTCGATCAGAACTGCCAGTCTGTGTTGCTGCAGCTTCaatttggtttgtgttttcacacactgtctttaagattaaaaacatatagAGGTATTATTTGTATAGGCTCTGTAATGAATTCAAAATACTGTCTAATTTCAGATTCTGACGTAGACACAGTGGGCCTGTGCCAAGAAGGCCAGTTTTTGGTGGTTGGAGAGAGAAACGGAAACATACATCTTAATTATGTGGCGTTAAAGAAGACAGTGCTGACGAAAgcTTTGGTGCAGAGGCCTGTCAATGACAATGAGATGACATACAAAAATCTTCTCATTCAAGAAGATAAATCATTGCCAGGAACATACCACATGTTTCTGCTGGTATCAGATGGGTTCTTTCAGATTTCCAACCTACATCTGGAGAAAATTCAGATTGcCATCGAGAAGATGGATTTTGGTGCCTTAAAAGAGCTTCAGAATCCCATTAAGATTGCTTTCTTTTCCACTGAAGAGAGACACACCAATGGTTGCCAGTATGCTGAGACAGCTGAACTGGCAAATAACATCCAGCTCATAATTGGGGGCAGTGGACGCAGTGTGCTGTCTAAGTGGGAGATGGACCTGGTTCAGAAAACATTGTCTATTAGCAATGATGTGGACTGCAGTTTATTGGCAGgaGTGAAAAAAAGCCAAACTGTGGATAATCTGATGTTTGTTTTGGATGATGAGAATGTGTTGACCATGTGGGATGTGCATTCTCTGGTGATGGTTTGGTGCTGGCCTTCACTTTCCATCCAGGACTTCCTGCTCACTACAGAAGGAGATTCTGCTTCAATGGCCATGCaagaaaatgcaaatctgaAGCTCATAGCCCTCACGACACAGGACAACAGACTGATGAGGACTCTCATGGTATATTCTCTTCCCTCAATGACCCTTCTGTATTCATTGGAGGTCTCTGACATTTCCTCACTGGTCCAGACGGGAATCAGCACGGACACCATATATTTACTGGAAGGAATACACGAAGACCAGGAAAGGTCCGATGGGATAGTTTCTGCAGTAGTAATGCGATGTCTGACAGAGGCTTTGCCAGAAAACCGGCTGAGTCGCCTTCTCTATAAGCATAAATTTGAAGAGGCGGAGAAGTTTGCCATCCAGTTTGGACTTGATGTTGAGCTCGTCTACAAAGTGAAGCTGAACTTTGTGCTGGAGAAGCTGGCATCAGCTTCAGTTGGGGGCTATGGGCAAGCTGTCTGGGCGGACCTGGTGGATGAAGCCAAAACCAACTTGCAAAAGATTGTGGACGAGCAGTTTGTAGTGCAGTACTGCATCAACGCTCCCTGGCCTACATTCGACACTGCGCAGGAGATGCTCAACTACGCAAAATCCAGAATTCTGGAGGCTCTTGCGAAACTCACTACCTTTTATGGTTCCAGCGGCCCGGAGAAATTTAGTGGAATTTCCTGGATTGAGTTCTTGAACAGCACTGACCTCCTGAGTGACATAGTGTGGCATCTGAAGGAGAGAGACCTGATGTGTGCCCAGTATCTGTGGCTGCGGCATCAACCGGAATTTGAGAGGCAGTTTGATGAAAAAATGTTGGAAACACTACTCGGTACGATCCCTGAAGATATCCCGTCTCGCCATCTGTGCCTGTGGTTTAAAAGTGTGATCATCCCATTTGTGAGAAGAATAATCCCTAAAGGACAGAAAATGCTTGCACAGTGGTTGCAAGAGAGGGCAAGGAACTTGGAGTTAACAGAAAAGtgTAACTGGCCAGAAAATGGACTGGAAATGGCCGAACTATATTTTGTATCCAGAAACCCCAATGAATTAGGATTATCTTCTTCCTGGATTTGGATCCCTTTGAAGGAGGATGGGGACTGTGAGGAAATCCAGCAGTTGAAAGTTCTGGTGGGCAACCTGCGGCAGCTGCTGGACCTCTACAAGAAATACAACTGCAGGCTGCCACTCTCGGACTTCGAGAAGgaaAATACAACAACCATTGCTTTCCTGATGCTGGACAAGGTTTTGGCTCCAGAGCTCATCCCCTCGGCCATGGAGAGTGTAATAAAGCCCTACGCCCAGGAGCACGGCCTGCAGCTGGAAGAGCTGCTGCTACAGTACATCAAGGATCTGCTGGAGCGCTGTAGTTCTCGCACTGCCTCTTTCTTCGAGACGGAGTGGGAGGCCAAAGCCATGGCTGTGCTGGATTGCATGTCTGATACTGATCTGATCTTCGACGCCGTGCTGCAGATCATGTACAAAGCTGTCGTTCCCTGGAGTGAAGCGGTGGAACATCTGGTCCAGCAACATCTGGAAATGGATCACCCCAAGGTGGAGCAGCTCCAAGAGAGCTACAGGCTCATGGAAATGAAGAAGCTGCTGAGAGGATATGGAATCCGAAGCTTTAACCTTTCTGATGACAAACAGATCATGAAACTGGTGAAGTATATTCTGAAGCAAGACCTACCCTCTTCCTTAGAAGACGCATTGAAAGTGGCTCAAGCCTATATGTTACCCACCCCAGAAGTCTACATTATCCACATTGTTCAGCTCGTCAACCGAGACAAAAGCGAGGAGTGTCTGAAACTTCTGAAACTCCTTCCGACCAGTGAGGCTGAGTGCATTTCTGAGAGGTTAGCCGTGTGGGCTCATCTGCAGCTGCAGGACCAGACCGATACTTCAGAAGAGcACAAAAAATATCTAATGGCAGTGGCACAAATGATGGTGGAGACACTGAAATTCCTGCAGAGCATTCAGAAAGACAACACTTTAAAAAGAATGAAGTGTGAAAATAATCTGAAGATGTTTGAAGCTATTGCGCACTTACAGgAAGACTTTGACATCTTCCTGTCCTTAGAGGACTATGAGAACCCTGCTCTGCTGGCCCAGTTCCAGGAGGAGCACGTCAAGGCCTACGAGGGTACGCTGTCCAGGGCCCGGACACGGAAGGCCTCGGTGGTTGCCAATGATGCTGACGGCAAGACCAAGACCATCTCCACAGAGGCTGGGCTGTACCGGCTGGCCCTGCTGCTGCAGCGCTCTGAGCAGGAACTGGGCGCAGACCTGGCCATGAGGGCACTGGCCGTGGGCAAGGTAGAGAAGGCCCTGAAGATCTGCAGGGAGTTGTATCAACATCATTGTAATGCCAAGACTGGACAAGCACTCTTCAATGCTGCCCAGAAGCTCTGCCAGATGTTGGAGGCCAACGTTCCCATGATAATCCCTGAAGGAATGAATCTCCCTGCTGTAATCCATGACCTGGCCTGTCAAGCAGCCACTGTGTGCAGCACAGACCTGCTTCTGGACTGCCAGGAGCTGTGCAAGAACACCTTGGCTGCCATGGACGTGTATAGGCAGTGTCAGATTGATGACTACGGGTTCATAGCAAAGACGTCGCTGGGAGCAGACAGGGATCCATATGAAGAGTGGACCTTTGAGGACTTCTTCAATGAGGACGGCATCGTTCTGGACCCAGTCACAGCCCTGCCTGTTCTGTATGAAATTACTACAAGTACGTCTCAGAATGACTCCTTAATGACGATCCTGCTGAAGTTCTTATGTTCTCCCATGTCAAGGCTGTGCTTCATTGCATTTCAAGGGGCTTTGTTTCTTTACCCCCTTGATTGTTCCTGCTTGTCCAACTGTTCTTATGCTGGTGGGATGAACTTCCTGAAGCCCATGAAGGTCCCCATGAATGCAATGCTGCAGAACCTCCACGAGTGCAGTCAGCTGCAGCTGGCCTTGAGGCTGGTGGTCAACTCCTTCGGGACTTGCCTGCAGCACGTCACCTCCAACAATATGGCATTGGTTCTGAGCTCCAAGCTGCACCATCATCAGCATCTCATGGAAGACAGGAACTTCATACTGTCCCTGGGAGAGAAGACCATCTCTCTTATCAAGGACGCCTCCATGGCTTTGCTGCACAAGGTTTTTAACTGCAGAGTGGTGGACTGTGACCTGGCCATAGGATACTGCACTCTCTTGCCCAAGAAGGatgcatttgaaaagctgtggcatgttatcaacAACACTTGGCAAAACTACGACAAGATTctgAATTCGGTGAACGATGGCCTTTTGTTTCCATCTCAGGCTGTAGCTGTAGTTGGTGCCCATCTCTCCACTTtatataaagaagaagaagaaggtcaGAAGTTCCTGTCTCTCATCGCAGATGCTGAGTGGGGAATTGAGCTGGGGAAATTTGGAATTTCGTTCCAGTCTGTATTCCGACAGGCTCCTGAGAGAAAGAAGGATCTGATTACCACCTTGGTGAGGAACCGAAAAGTAGACTCTGACACATTTGACCTGGACAGTGACTCGGCCTTAAATCTCTACATCAAGACTCTGCTGCTTCATGGTGCAAACAACAATCAGAATGAAGATGGCCCAGAGACAGACGACTGCTCAACTGTGTGTCACAGAGAGACCCTGGCCACCGCGCTTGGAATAATCCCCCTGCTGACGAGCAGCCGTGATCTGGTCATCAGTCTGAGTGCAGCCATTCTCAAGctcagTCCCTATGATTACGAAACGATCGAAGGTGTTCTTAAAGTCATACAGACTGCGGATGAAAAGATCACAAGTCTTGATCTTGACCAGGCTTTAGGATTGCTGCAGCACCTGAAGTCCTACAAACGCATCTCTCCCCCGATGGACTTGGAGCATCACTACCTGCTGGAGAACTCCCTGGATGACTCCCCTCATGCCCACACAAGACTGCCCTTCCACCTCATCTTCTTCCAGACCTCCCACTGCTTCTGGAAGATCATCTCTGTGGAACTCAGTGAGGAGACTTTTCCCACTCTGCTACTGATCTCTAAACTGATGAAAGTGTGTTTGGACAAACTGTATATGTCCGCAGTGAACCATGTATTTGAGAAAAGCCTCAAGCCTCGATCCCTGCAGCAGGCCAAGGAAGGAAAATCTCACGCCATAACCAAAGAGACCATGAAGACTGTGGAGACCATTAAGGCCTACCTTCTCTCGATTAAAAACCCAGAATGGGCTGCGGCCACATCTCACAGGATCGCTCAGGAGCTCCCCACAGGTATTGAAAAGACCAGTGCcttaaagttctgtttgctcCTCGCTGAAAAATGGCTGAAGATCACCAATCCTGAGGATCCCACTCACGCAAAAGCAGAGATATTTTGGGACAAGCTGAAAGTGCAATACCAAAGGTCGGCCACTGAGAACACGTTGATGTCTCACCGTTTAAACTCTCCCGAGTACTTGAAGTTAACTGGCTTCCCTGCAAAACTCATCGTCTCCCTCTACGAGCACAGCAGCATTGAACAGCGAATCAAGATCCCGACTGGCACCGACTACCCTGACATACATGCTGTGGCCAAAGAAATTGCATCAATAAACAACATTGATTTGACTAAAATCCGGGATGTTCTGCTGGATAAATGGCTCTGCCAGAGTACCCGGCCAACTGCAAACGATAATAACGTTCAAGACTACATCACAGACATCCAGGAAGACCCTGAACTCATGAGAGTTATTTACTTGCTTCAGATGTACCCCATCGACTTCAGTGCACGGATGCTATATGCCATAGTGACAGCAGAAACATCTATTGCAGACACCACCATGCTGGAGTCACTCCTCAAAACACCCATCGAAAAAGTCAAGTATTACCTGAAATGCTGCATCTACCTCTCTGAATTTGAGGCCCTGAACATCCCGTACTCTGTGGAGTCCTTTCACAACAGTCCAAAGGAGGGCATGATCAAAGGCCTGTGGAAGAACCACAGTCATGAACCACGGGCAGTCAGGCTGGTGGCGGAGCTCAGTTTGGAGTACCAGGTTTATGATCCTCAGCTCTGGAATGGAGTTTTACAAAAACTGCTAAGTTTCAGCATGATCGGTTACCTGCGAAAAGTTTTGGTGGCTATAACTGCTATCCATTCTTTATGGCAAGTTCCAAATTTTGTGAGAGCTTGGAGGAGTGTCATTCTGGCACCTTTTCTCTCAGCCTCGGTACCCCTGAGTCCTCAACAGCTGGGGATGTTCTACGAGACTTTTGTGCTTCTTCTCAAGTGCCCTGTCCTCCTGGACCTGGACTTGATTGGCATTGCCAAGCAGTTTGCTCAGTTTGACCTGCCAGCCTTCACCCTGGGCACTCTTCTACTCATTCCCTGCTCTGAGAAGAAGGATCAGCAAATCCAAGGTTTCCTGTCTGCCAGCAATCTGGTCACTGTGCTTGAACAAGTGGAGGAGCACCTGAGCACTGGGGAGGTGGCTGGATTTTCAACACAGattaaagacattgtgctgagtttcatgtgcACAAATAAACTTTATGAGAAGCTTGTGCAGACCAAGCTGTTTCCTCTGCTGAAGCACCATGTCATCGTATCCAACCAAGTGAGGGACCTTGTGGACTACCTCGTAAACAGGAGCTGCCTCGATGATGCTGCGGGTCTTGCAGCAGAATACCTGAAGCACAAGGGGAGGCACCTCTCGGCCAACATGCCTGCAGCTGAGGTCTTGAAGATTACC

Function

GO: NA

KEGG:

id description
K11577 KNTC1, ROD; kinetochore-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018775 True 6706 mRNA 0.48 62 20322418 20348942

Neighbor

gene id symbol gene type direction distance location
AMCG00018774 NA coding upstream 9862 20311158 ~ 20312556 (+)
AMCG00018772 NA coding upstream 114964 20202428 ~ 20207454 (+)
AMCG00018773 NA coding upstream 125314 20189590 ~ 20197104 (+)
AMCG00018770 mlxip,LOC107702943 coding upstream 170692 20121209 ~ 20151726 (+)
AMCG00018767 NA coding upstream 203276 20111903 ~ 20119142 (+)
AMCG00018784 NA coding downstream 34187 20383129 ~ 20398337 (+)
AMCG00018783 NA coding downstream 59131 20408073 ~ 20433655 (+)
AMCG00018789 NA coding downstream 109023 20457965 ~ 20463349 (+)
AMCG00018782 arl6ip4 coding downstream 128184 20477126 ~ 20484929 (+)
AMCG00018793 kmt5a coding downstream 282061 20631003 ~ 20637704 (+)
G118572 NA non-coding upstream 19460 20302670 ~ 20302958 (+)
G118566 NA non-coding upstream 22588 20279288 ~ 20299830 (+)
G118410 NA non-coding upstream 328089 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 743387 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 842462 19479691 ~ 19479956 (+)
G118601 NA non-coding downstream 28346 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 90018 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 141919 20490861 ~ 20491106 (+)
G118620 NA non-coding downstream 150732 20499674 ~ 20500210 (+)
G118621 LOC107554528,LOC107654556 non-coding downstream 152008 20500950 ~ 20501433 (+)
G118557 NA other upstream 61478 20259377 ~ 20260940 (+)
AMCG00018762 NA other upstream 347688 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 840326 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 1088067 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1413462 18894335 ~ 18908956 (+)
AMCG00018781 denr other downstream 23277 20372219 ~ 20374812 (+)
G118623 NA other downstream 165218 20514160 ~ 20514491 (+)
G118635 NA other downstream 243794 20592736 ~ 20593016 (+)
G118636 NA other downstream 244424 20593366 ~ 20594139 (+)
AMCG00018792 LOC106928543 other downstream 253014 20601956 ~ 20603315 (+)

Expression


Co-expression Network