AMCG00018776


Basic Information

Item Value
gene id AMCG00018776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20349576 ~ 20362936 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018776
ATGCTCTCCACTGCCCTTCCCCCCATGCTCATCCTGGAGTTTGTGCTGGGTGCCCTGGGCAATGGGATCGCTCTGTGGGTCTTCTGTTTCCACCTGAAGCCCTGGAAAACCAGCACAGTCTTCCTGTTCAATTTGACCCTGGCTGATTTCCTCCTGATCATCATCCTACCCTTCCGGACAAGCTACTACCTGAGGAACAAGCACTGGGTCTACGGTGACGTGTTCTGCCGCATTTCCTTGTTCATGTTGGCCATGAACCGGGGAGGAAGCATTCTGTTCCTGACAGCAGTGGCAGTGGATCGCTACTTCAAAGTGGTCCATCCCCACCACCCCATAAACTCCATGGCCATCTCAAGGGCCTCAATCGCTGCCTGTGTTCTCTGGGCTTTTGCCATATTGATGACAGTGTACCTGCTGACTGAGTCCCACCTAATCGACATGGAAAACTCTACACAGTGTGATAGTTTCACTATAGATCTATCCTCTGTCTCTGGAAGTATGTGGCACAATGCACTGTTCTTCTTGGAGTTCATTGTGCCTCTGGGCATTATAGTGTACTGCTCACTGTCTATCATCTGGCAACTTAAGGACAGACAACTAGACAAGCACAACAAGATAAAGAAAGCAGTGCGATTTATTGGTGTGGTTGTAGTTGTGTTTGTGATCTGTTTTCTCCCCAGCAATGTCACCCAGCTGGTGATTTGggccaagatggggcagaagaTCAAGAGCTGTGATGCTTATGAATCTCTGGATCGTGCATTCTACATCACCATCAGCCTGACCTATCTCAACAGCATGCTGGATCCAGTGGTTTACTACTTTTCCAACCCCACATTCAAACGGATATACAGAGCTGTCGTAAATAACATTCTTCggaagaaaaaagagaagaagaggGAAGCTGATGAGAAGACGAGACCGACATTGCGAGAGACTACAGACTCTCAGACCCTCAGCCATATCAACTGGCTTTCACAGTTCTTAAAGCCGGCCCTTATAATCGAGTTCATCATCGGCTCAGTTGGGAATGGCGTCGCCCTGTGGATATTCTGCTTTCGGGTGAAGTCCTGGAAAGCGAGCACCGTGTACCTGGTCAACCTGGCTCTGGCGGACTTCCTGCTGATCTTCTGCCTCCCGTTTCGCACGGACTACTATTTCCACAACCACAACTGGGTCTTTGGCGACGCCGGCTGCCGGGTCATGCTGTTCATGGTATCACTGAACCGAGCTGGCAGCATCGTGTTCCTCTCCGTCATTGCCATCGATCGCTTCTTCAAAGTGGTCTACCCACACCACACCATCAACACAACATCGAGCAGAGGAGCTGCCAAGATCTCATGTTTGATGTGGGGCCTCTGCTTAGCCATGACTGCTTACCTCGCAGCTGAACCCCAGGAAAGCCAGCAGAACGCCACAGTGCTGTGTGAGAGTTTCAAGCTGGAGGCAGAGATCGCAGGCACCCAGCTGTGGCACGTCGTCTTCTTCATCGCCGAATTCTTCATCCCCTTGGTCGTAATTGTCTTCTGCACCATCTCCATCTCTCATCAGCTCAGGACGAGGGGGATGGAAAACAACCAAAAGATCAGGAAAGCCTTGATGTCAGTGCAGGTGGTTACCGTGGTGTTTGTCCTCTGCTTTCTGCCAAGCACTCTCTCCTTAATTGTTTTGATGATTGTCAAGAGTATGAAAGACTGCACAGCCTACTGGGTCGTGGGCCAGGTGTTCTACGGCAGTCTGGCTCTGACCTACTTCAACAGCATGCTGGATCCCATCGTGTACTATTTCTCCAGCCCCATGTTCCGTAATGCTCTGAAGAGCGCAGGAGCGACAGAGGAGTGTCAGAAGCAAAGGGTGCAGATATCATCCCAAAACCTGCTGCTGGAGATGGAGAATGCGTCCTGCTGTGTGTTTGAGGAGCCCATTTTATCTACAGTTTTGCCTCCAGTGCTCATCCTGGAGTTCGTATTTGGTCTGCTCGGCAACTTTGTGGCCTTGTGGATGTTCATCTTCAACATTGACACCTGGAAACCGAACAATGTCTACCTCACCCACCTGGCCGTGGCCGACTCGGTGGAGCCCATTTTGGGGTCAGTTTTGCCTCCAGTGCTCATCCTGGAGTTCATATTTGGTCTGCTTGGCAACTCTGTGGCCGTATGGATGTTCATCTTCAACATCGACAACTGGAAACCGAACAATGTCTACCTCACCCACCTGGCAGTGGCCGACTCAGTGAAGCTTACAAAGAAGTCGGCTCCCTGGAACGACAGCGAGTCGACCCACGGAACACAAcaaattctgttgactcttGGAAGCGGTTCTGCCATATTTTAG

Function

GO: NA

KEGG:

id description
K08402 HCAR2_3, GPR109; hydroxycarboxylic acid receptor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018776 True 2334 mRNA 0.51 5 20349576 20362936

Neighbor

gene id symbol gene type direction distance location
AMCG00018779 rsrc2,LOC106585280 coding downstream 27945 20313185 ~ 20321631 (-)
AMCG00018778 NA coding downstream 39859 20303764 ~ 20309717 (-)
AMCG00018780 NA coding downstream 70038 20229171 ~ 20279538 (-)
AMCG00018777 vps33a,LOC106585293 coding downstream 124519 20218377 ~ 20225057 (-)
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding downstream 255070 20087140 ~ 20094506 (-)
AMCG00018786 denr coding upstream 14089 20377025 ~ 20381267 (-)
AMCG00018787 NA coding upstream 96019 20458955 ~ 20466043 (-)
AMCG00018785 NA coding upstream 108603 20471539 ~ 20476529 (-)
AMCG00018795 mphosph9 coding upstream 224653 20587589 ~ 20601750 (-)
AMCG00018796 sbno1 coding upstream 245959 20608895 ~ 20624686 (-)
G118536 NA non-coding downstream 132397 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 181245 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 196589 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 225088 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 267913 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 119948 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 243892 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 316344 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 317674 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 318188 20681124 ~ 20681365 (-)
G118477 NA other downstream 269694 20078088 ~ 20079882 (-)
G118434 NA other downstream 361408 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 850597 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1301859 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1504432 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 76023 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 125999 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 240559 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 281949 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 320730 20683666 ~ 20689922 (-)

Expression


Co-expression Network