AMCG00018777 (vps33a,LOC106585293)


Basic Information

Item Value
gene id AMCG00018777
gene name vps33a,LOC106585293
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20218377 ~ 20225057 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018777
CGCGCAGCCTCAGCAGCACAGCGCCCGTGTTTCCTGTGTCACATGACCCCACGCCTGCTGCGCGTCACATGACCTCGCTGTCAGACGGGGTAAAGATGGCGGCGCACTTGTCTTACGGAAGAGTCAATCTCAACATATTGAGAGAGGCTGCGAGGAAGGAGCTGCGTGAATTCCTGGATAAATGCGCCGGGACTAAGGCAATTGTGTGGGATGAGTACCTTACGGGACCGTTTGGGTTAATTGCCCAGTATTCTCTTCTAAAGGAACATGAGGTAGAGAAGATGTTCACACTCAAGCCTGGACGCCTTCCCGCTGCGGACGTGAAAAATATTATCTTCTTCGTGCGGCCCAGACTGGAACTAATGGACATCATTGCTGACAACGTGATGAGTGAGGAGAAGATGCGTTCACACCGGGATTTCCACATCCTGTTCGTGCCGCGCCACAGCCTGCTGTGTGAGCAGCGCCTGAAGGAGCAGGGAGTACTGGGCTCCTTCATCAACATCGACGAATACATCCTGGATCTCATCCCCTACGACGGAGACCTGCTGTCCATGGAGTCGGAGAGCGCCTTCCGGGAGTGTTACCTGGAGAATGACCAGACCAGCCTTTACCACACAGCAAAGGGGCTGATGACTCTGCAGGCTCTCTATGGAACCATCCCTATGATCTTTGGCAAAGGGGAGTGTGCCCGGCATGTAGCCAACATGATGCTGAGGATGAAGAGGGAGTTTGCAGGCAGTCAGAACCAGATCCTGCCCGTGTTTGACACGCTGCTTCTTCTGGACCGCAACGTGGACCTGCTCACTCCATTAGCCACGCAGCTCACCTACGAGGGCCTCATAGATGAGATATACGGCATCACCAATGGCTACGTAAAGCTCCCTCCGGAGAAGTTCTCCCAGAAGAAGCAGGGCGAGGCGGGCAAGGACCTGCCCACAGAGCCCAAAAAGCTGCAGCTGAACTCCGCGGAGGAGCTGTATGCCGAGATCCGGGACAAGAACTTCAATGCAGTTGGAGCTGTGCTGAGCAAGAAGGCCAAAATCATCTCTGCTGCTTTTGAGGAGAGACATAATGCTAAAACAGTGGGGGAAATCAAACAGTTTGTGTCACAGCTGCCACATATGCAGGCAGCCAGGAGCTCCCTAGCAAACCACACATCCATCGCTGAGCTCATCAAAGACATCACCACCTCAGAAGCATTCTTTGATAATCTGACGGTTGAACAGGAGTTCATGACCGGAGTGGATACGGATAAGGTGAATTCGTACATCGAGGACTGCATCGCCCAGAAGGACCCACTGATTAAGATCCTGCGTCTTGTGTGCATGCAGTCTGTCTGCAACAACGGCCTGAAGCAGAAAGTGCTGGACCACTACAAGCGCGAGATACTGCAGACGTACGGCTATGAGCATCTGCTGACCCTCAATAACCTGGAGAAGACTGGGCTGCTGAAGCCACAGACCAGCACCCGAAACAACTACCCCACCATCAGGAAGACCCTCAAGCTGTGGATGGAGGATGTCAATGAGCAGAACCCCAATGATATCTCCTATGTGTACAGTGGCTACGCCCCCCTGAGCGTGCGCCTCACACAGCTGCTGGCCCGACCTGGCTGGCGCAGCATCGAGGAGGTGCTGAAGATGTTGCCCGGGCCCCACTTTGAGGAGAGGCAGCAGCTCCCCTCTGGGCTGCACAAAAAACGCCAGCAGGGAGAGAACAGGACCACACTGGTGTTCTTCCTGGGGGGGGTGACCTACGCTGAGATTGCCGCCCTGAGGTTCCTCTCGCAGATGGAAGACGGAGGCACTGAATACATCATCGCCACCACCAAGCTCATCAACGGCACCAGCTGGATCAAGTCTCTGATGGACAGGCTGGAGGCGCCGCCCTTCTAGAGTGCGCTGGCCGGTAGGACTGGGCTCTTGGAATCCGGACTGGGGGACGGAGTTGGTCACACAGAGGGTGTGGAAAACTCGAAAGGGCAGCACATTTGCCAGCATGTGGGTTTGGCATAGTGCTTTGTAGCTTACATGTTCCTGCGAAATTATGTGAAGGAGGTAGCTAGTGGGAATCAAGAAAATTCTTTGTACATAAGCAGCATTTCCTGCGTCTCCTGTAATTTTGCATACTGTTATGTTTCTGGTCTCTGTTAGCTCAAGGCTGCTTGCCTGTCCTTTGTTAAGGCAAGTTCATGTTAAACTAATGCAGGTATAAAGAGTGATAAAAGCTATAACACTATTGCTCCTTTCATTTTGTCATATTTACAAAAGAATCCAGCATTTCTTCTGTctctttgaataaataaatgtatatataaacctc

Function

symbol description
vps33a Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within protein transport and vesicle docking involved in exocytosis. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Orthologous to human VPS33A (VPS33A core subunit of CORVET and HOPS complexes).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33A-like

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K20182 VPS33A; vacuolar protein sorting-associated protein 33A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018777 True 2325 mRNA 0.53 13 20218377 20225057

Neighbor

gene id symbol gene type direction distance location
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding downstream 123871 20087140 ~ 20094506 (-)
AMCG00018765 NA coding downstream 168134 20036729 ~ 20050243 (-)
AMCG00018766 NA coding downstream 185870 19991333 ~ 20032507 (-)
AMCG00018760 NA coding downstream 261110 19923370 ~ 19957267 (-)
AMCG00018761 LOC106579932,LOC105014887 coding downstream 305105 19894850 ~ 19913272 (-)
AMCG00018780 NA coding upstream 4114 20229171 ~ 20279538 (-)
AMCG00018778 NA coding upstream 78707 20303764 ~ 20309717 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 88128 20313185 ~ 20321631 (-)
AMCG00018776 NA coding upstream 124519 20349576 ~ 20362936 (-)
AMCG00018786 denr coding upstream 151968 20377025 ~ 20381267 (-)
G118536 NA non-coding downstream 1198 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 50046 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 65390 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 93889 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 136714 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 257827 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 381771 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 454223 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 455553 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 456067 20681124 ~ 20681365 (-)
G118477 NA other downstream 138495 20078088 ~ 20079882 (-)
G118434 NA other downstream 230209 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 719398 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1170660 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1373233 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 213902 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 263878 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 378438 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 419828 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 458609 20683666 ~ 20689922 (-)

Expression


Co-expression Network