AMCG00018778


Basic Information

Item Value
gene id AMCG00018778
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20303764 ~ 20309717 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018778
ATGGCGGAGGTGGATTTTGGGGACAGTGAGCTGTTCGAGCAGTTAGACGAAAACAAACCTGTCTCGACCCACATTCGGTTCGAAGATGAAGGAGAAACTCAAGATGAGATCCAGGAGCTCCGGGAGAAATTGGAAGAATACGAGGAAACGATTAGCCGCCTGAAAGCAGAGAATATCCTTCTtGGGTTAAGAATTGAAGACACTAACTTTGATGGGCCACTGCTGCAGATTCTATTTACCAACAATGCTATCTCAAAGCAGTACCATCAAGAAATCGAAGACTGTATTTTCAGCCTAATACAGAAACATGAACAGGAGGCAAATGAAAAGGAATATTCCTCGTTTCACCTCAAACCTCAGCCATCAAGTTTTGTGCTGGAAGAGAACCATAAAGTGAAGACgtccaatacaatacaaaaaatcaaGGATGCTTTTAGCgttGTCGGCAGTGTTCTTTATTTCACCAACTTTTGTCTTGACAAACTTGGACAGCCTTTGTTGAATGAGAATCCCCAACTGACTGATGGATGGGAGATTCCCAAATACCAGCAAGTGTTTGGCCAGATTATATCTCTTGATGGACAGGATGTGCAGATCAAGGAGAAAAGACCAAAACCTTGCTGCTTTAACTGTGGTTCAGAGGAGCACCAGTTAAAAGACTGtccaaagCCAAGGGACATGTCTCGAATCAATGAGAAGAGAAAGGAGTTTTCTCAAAACAGCAATGTAAGCAACCAGCGATATCATGCTGAAGAAGTGGAGGAGAGGTTTGGGAAATACAAACCAGGAACCATGAGTGAAGAGCTGCAAGAAGCACTTGGTCTTGAAGAGAACACTTTGCCACCATATATTTACCGCATGCGTCAGCTGGGATATCCCCCAGGCTGGCTGAAAGAGGCAGAGATGGAGAACTCTGGTCTGACTCTCTATGATGGGAAAgTGTCAAGTGATGGGGAAATTGAAGAGGATGAAAAGCACCAGGGCCAGCAAATCTCCTATGATGTGTCAAAACTAGTAGATTTCCCTGGCTTCAATGTCTGTGCGCCAAAACACATATCTGATgACTGGCGGTTGTATGGGTCTATTCCTATGCAGCACAGCAGTTTAAAAGCAAATTTTGCAGCCTATCTGTCACGTAATTTTCCTTCGcCAGGGTCTAACTCCAGCAAAAGACCACATGAATCTGAATCGACGCCTCGTAATCCCAAGAAAAGGAAATCTGATATCGTTGATCCTGCAAAGTGCCTGGACATGGATGTGGATTCAGGCTCTGAAACTCCCTGTCGCTCCAGGAGTTATGATAACTTCCAGTTCcagcctcctctccctcctggctCACCTGGCATGGGAACCCCACCGCCTCTGCCCCGTGGCACCCCCCCGGGCACTCCTCCGAACTTCATCCCCCCTCCGCCTGCCACCCCCACACCTCCACCACTGCCCAAGGGcactcccccacccacccccaccaaCAGGTCCCCGGCAGTGCGTGCGCGGGGCGGGGGTGATGACTCCACGGACGAGGATGCCCTGACTCTGGAGGAGCTGGAAGAGCAGCAAAGACTGATCTGGGCGGCACTGGAGAACACGGAGACCAACAGTGACTCGGAGACCCCTGTGGGCACCCCTGTGGGCACCCCTCTCGTGGGCACCCCTCTCCTTGGGACCTCAGGGGCATCCTCGCCCTGCAAGAATGACACTGAAACATTGCCAGAGGAGTCCGACGAGTTTGAGAAATTGGAGGCCGTCATCTCTGAACACAATAATGAAGACACCAGCAAGTCCGCACCAGCCGTGGAGACTGTGGAGAGCGTGGAGACTGTGGAGAGCGCAGAGACCATGGAGATGGTGGAGAGCGCCCAGAGCACCGTGGAGGAGAAGGCGGAAGTGATGGAAGTGACCAGCGAGGTTGAGGTCACCAAAGCGGAGGAAAATCCCCCGGCCGAACCAAGTGGCGGCACAACTGAAGATCCGGACGGCACCAGTGAGAAAGTTGAATCCGTCCCCCACCGGAGTAAATTCGCAGAAGGCATCATTCCCTTTGAAGACACAGCGGAATACACTAATGTCGCAGAAGCCACTGGAGTCTACTTCAAGATACGGGACTTGTTGAAGAGTTCGCCTCGCAACCAAACTAAAAAGAAACCGTGAGAGTTTCACCTGCAATGGAGAGGGCGTTGAAACTGTAACCATCCAGGGATTCGGTTTAAACCTTTCTATTCAATGGaccatttaatgtttttttcttctcatctgTGCTGCATAAAGATTggggttttaattatttaactactAGCAGCATGAGGAGAACCAAAATCAAGATTTCAACAGTCCAGAATGTTTCtccacagatgtttttttttttttcttaattttaatcatccatttctttttgtaaaaacaaatatataaatctttCTGCGTGTAAAAGGGTAGTTTGTAATGTAATGGTCACGTAAGaagtaggttttttttttaatgatatttttttctctagTGGTTGTCCTGTCACAGCAATCCCCTGTTCTGTGGCTatggtatttaatgttttaaatgttacaattttataattttattttcagtcttgcTTTCCAATCACTTACAAAACCTTTCAGGGATTTCAGGCATCCTGTTATtcaggtattttttaaatattctcagTAGTTGGTTTTTAATGCCCCATTTGACTTTGTAACCAACATTCAAAAGTACACATTCATCTTCCACTGTTAATaaacctttcttttttatatactgAACTACACCAAACATATGTAAAAGGCAAATCTGAATTTTAagttttccatttctgtcaATACCATGAAAAGCTAACATGGAtgcaatagaaaataataaaataagaaattttAATTGctctaaaa

Function

GO: NA

KEGG:

id description
K13128 ZCCHC8; zinc finger CCHC domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018778 True 2882 mRNA 0.46 13 20303764 20309717

Neighbor

gene id symbol gene type direction distance location
AMCG00018780 NA coding downstream 24226 20229171 ~ 20279538 (-)
AMCG00018777 vps33a,LOC106585293 coding downstream 78707 20218377 ~ 20225057 (-)
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding downstream 209258 20087140 ~ 20094506 (-)
AMCG00018765 NA coding downstream 253521 20036729 ~ 20050243 (-)
AMCG00018766 NA coding downstream 271257 19991333 ~ 20032507 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 3468 20313185 ~ 20321631 (-)
AMCG00018776 NA coding upstream 39859 20349576 ~ 20362936 (-)
AMCG00018786 denr coding upstream 67308 20377025 ~ 20381267 (-)
AMCG00018787 NA coding upstream 149238 20458955 ~ 20466043 (-)
AMCG00018785 NA coding upstream 161822 20471539 ~ 20476529 (-)
G118536 NA non-coding downstream 86585 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 135433 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 150777 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 179276 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 222101 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 173167 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 297111 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 369563 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 370893 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 371407 20681124 ~ 20681365 (-)
G118477 NA other downstream 223882 20078088 ~ 20079882 (-)
G118434 NA other downstream 315596 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 804785 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1256047 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1458620 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 129242 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 179218 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 293778 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 335168 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 373949 20683666 ~ 20689922 (-)

Expression


Co-expression Network