AMCG00018785


Basic Information

Item Value
gene id AMCG00018785
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20471539 ~ 20476529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018785
AAGTCTTCCGCCTTCCACTAGCAACAAGAAGACGCTGAGCTCGCCGCGCCAATTCCGTTGATGCACAAGACACACGCAAGATCAGACACCGTCACCCCCGATAGCCCCATTCCTGAGAAGGGGACCATACCCTGTGCACAGATTTCTTATCGTTTGCGTTTCGGTGCGGCGGCACCTGGAGACGGTCCAGATGTTGAGTATGGACTCGCTGCAAGTGGCAGAGGAGGAGGTAGTTGAATCCACGTCCAACAGATTGGAAGATATCCACACCTTTCTGGCCGAGGGCTGCTACCCTCAGACCATGAGTCCCATTCGCAAGAAAAACCTGAAACGATACGCGCAGAAATTCATTATTGAAGAGGGTCGGTTGTATTATGTGGGccagaaaaaagaagaaaagcgGGAAGTCGTGATAGATGCGGAGAGGAAACGCCAGGTTTTCCTCGAATGCCATTTCAATGACATCGGCCATCATCTGGGGCAAAAGAAAACGGTTCACAGGATCCAGAGCAAATATTACTGGCTGGGGATCGTGAAGGATGTGGTTGACTGGATTAAAGTCTGTGAAACTTGCCAACATGCAGAGCGCAATAAAAACATGTCCAGGAAAGTGCGGCCTATCAAGGTTGAAGCTCCATGGGAGATCCTGGGCATTGATATTTTCGGTCCTTTTCTAGAGTCAAGGAGAGATAACACCTACGTTGTCATAATAACCGATTATTTAAGCAAGTGGGTGGAAGCTCATCCAATCCAGAAGAAGGACTCTCTGTCAGTAGCCAGATGCATTTCTTCAACCTTTTACAGGTTTGGAGCGGCAAAAACAGTATTCTGCTGTCAAAGCCCGGATTTCTGTGAAGAGGTGACAAAGCAGCTGTGTGACCGGTGGAACATCGTCCAGAAGATCTCTGCGGTGGACCAGCCCCAGCTCAGCGCTCTGTACGACCGCAGCAGTGACCTGCTGAAAGAAGCCATCAGGCAGGTGGTGACGGAGAAACAGATGGACTGGGACGACTACCTGGACCCCGTGCTGTTTGTGTTCCGAAACTCCGTCAACCCCACCACCAAATTCACTCCTTTTTACGTGATGTTCAACAGGGAGGCCAGCTTGCCCAATGAGATTGAATTTGACCTCCTCAAGGACCACCAGGGACAAGAGGTAATAGCCAACATGAATGCAGCTTACAAACAGGAAAAGAAGAATGCCAAACGGAGAGCACGGACCATGCCCTCTATAACATTTAAGGTGACGGATCCTTTATTTGGCCCAGGAGACTCGACTCAACTAAAGAAGCTCAAAGAGAGCCACTACTTGTCTTTTCCTGTTGAAACGGTGCTGACGTCAGACCAGAGTGAGTCTGAGGGGAAGAAAAGTGACTTAGAATATACTTCATCAGTCCCTCAGGTTCATTAAGGGTATAGCGAAGGTCACCCTGAAGTCCTGAAGATGGATTGGCGTATTTTGACTACAGAGAGTTCCCGTAGGTGCTGCTTGGTGCTGATGTACAAGAAGCAACCCTCATCTTGATATGCGTTTCACTTCTTTGCACGTCTGACGAAGTATGCGCTGCACTGGTTCCGATATATTGACAAGCATCCGTGTCATTCTGCACTCCACACAGATGAAGGTCAATGGAAAACTTCCAGGCGTAGCATGGTCCTCCTGGTTGAAACTGATATCCATACAGGATGTTTACAAGTAAATTATAGTTCAGTTGACAACCACAGTTGACTGTGCGCCAAAGCAAAGGGTGACTGAAACATTCTTGAGCTAATTGCACATGTAGgttctgttgttttgttattttctctttaatgaTTTATATGGAAATGGTACCCCCAAAAACATCAGTGGGTGACTTCAGTAGCAAGCAATTACAAAGCCCCAGTAAAGCCCCAGCTTCTGGAGATGTTCAGGAAACCAGGGTACGAATTGGCGAGAAGAAATGTTGCAATTCTTCATTCCTAGATCTTCATGTCACTTTTTGGTGTGTTAGGTACTGTGAGTGGAGTTCATCTGAGACTGTGCTGTTCCTTACAAGCTTGAATCACTAGTTGAAGAAAATGAGGCATGCTTTTGACTAACGGGTCTTAATATTGATGGCATCCATGCGGTGTTTACTTACTGatttaagttgtttttaaagatcaTATTGTTGTATAAGCTTCATGCTTGAATTTATTGAATGACTTTAACTTCAGAGATGCTCAGTTCTTAAGATGTAGTTTTGAAAACTATAATTTTCCTGAAGATGATGTTattgaaattgtgattttacaTGGGGCCTCAACTCCATGTAATTTTTGATCAACCTTTgagtttaattatatatatatttttttagccCTGGCAACTAGCTACATTcctttttgtggttttatgtaTACAGAAAATGGTACAACGATGGGTTAGttgctggggagggggggattgcattatacatattttttgccCTCGTAGGGAAGTGGTTGgttgatttgaaataaataatttaatttttttaaa

Function

GO:

id name namespace
GO:0015074 DNA integration biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018785 True 2503 mRNA 0.45 8 20471539 20476529

Neighbor

gene id symbol gene type direction distance location
AMCG00018787 NA coding downstream 5496 20458955 ~ 20466043 (-)
AMCG00018786 denr coding downstream 90272 20377025 ~ 20381267 (-)
AMCG00018776 NA coding downstream 108603 20349576 ~ 20362936 (-)
AMCG00018779 rsrc2,LOC106585280 coding downstream 149908 20313185 ~ 20321631 (-)
AMCG00018778 NA coding downstream 161822 20303764 ~ 20309717 (-)
AMCG00018795 mphosph9 coding upstream 111060 20587589 ~ 20601750 (-)
AMCG00018796 sbno1 coding upstream 132366 20608895 ~ 20624686 (-)
AMCG00018798 NA coding upstream 161181 20637710 ~ 20641876 (-)
AMCG00018808 NA coding upstream 300390 20776919 ~ 20805326 (-)
AMCG00018807 ncor2 coding upstream 445844 20922373 ~ 21012691 (-)
G118536 NA non-coding downstream 254360 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 303208 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 318552 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 347051 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 389876 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 6355 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 130299 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 202751 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 204081 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 204595 20681124 ~ 20681365 (-)
AMCG00018788 LOC107579725 other downstream 12922 20438959 ~ 20458617 (-)
G118477 NA other downstream 391657 20078088 ~ 20079882 (-)
G118434 NA other downstream 483371 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 972560 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1423822 19038557 ~ 19047717 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 12406 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 126966 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 168356 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 207137 20683666 ~ 20689922 (-)
G118727 NA other upstream 220305 20696834 ~ 20697827 (-)

Expression


Co-expression Network