AMCG00018786 (denr)


Basic Information

Item Value
gene id AMCG00018786
gene name denr
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20377025 ~ 20381267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018786
ATGGCTACTACTGAAAATGCAGAATCAGGTTCACCAGAGAACAAAGTGGATCGCAGGCATGCTGACTCCAACGCTAAATACCCTTTGAAAGTGCTCTACTGTGGAGtttgttCCTTGCCAACAGAGTACTGTGAATATATGCCTGAACCAGCGAAATGCAGGCAGTGGTTGGAGAAAAACTTCCCAGATGAGTTTGCCAAACTCAGTGTAGGAAACTCTCCTAAGCAGGACAGTGGTGGTGGAGAGGTCCCTGCtctgggggaggaggaggagaagaagaagcagaagagaGGTGAGAGGTTAGGGGTTAAGGGTTACGGTTCATTTGTAGGCTTCCTCTCATTGGCATCAAAGTTCTATGTGCATTAA

Function

symbol description
denr Predicted to enable mRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and translation reinitiation. Predicted to act upstream of or within translational initiation. Is expressed in midbrain; myotome; optic vesicle; and retina. Orthologous to human DENR (density regulated re-initiation and release factor).

NR:

description
density-regulated protein

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K24272 DENR, TMA22; density-regulated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018786 True 369 mRNA 0.47 4 20377025 20381267

Neighbor

gene id symbol gene type direction distance location
AMCG00018776 NA coding downstream 14089 20349576 ~ 20362936 (-)
AMCG00018779 rsrc2,LOC106585280 coding downstream 55394 20313185 ~ 20321631 (-)
AMCG00018778 NA coding downstream 67308 20303764 ~ 20309717 (-)
AMCG00018780 NA coding downstream 97487 20229171 ~ 20279538 (-)
AMCG00018777 vps33a,LOC106585293 coding downstream 151968 20218377 ~ 20225057 (-)
AMCG00018787 NA coding upstream 77688 20458955 ~ 20466043 (-)
AMCG00018785 NA coding upstream 90272 20471539 ~ 20476529 (-)
AMCG00018795 mphosph9 coding upstream 206322 20587589 ~ 20601750 (-)
AMCG00018796 sbno1 coding upstream 227628 20608895 ~ 20624686 (-)
AMCG00018798 NA coding upstream 256443 20637710 ~ 20641876 (-)
G118536 NA non-coding downstream 159846 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 208694 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 224038 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 252537 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 295362 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 101617 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 225561 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 298013 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 299343 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 299857 20681124 ~ 20681365 (-)
G118477 NA other downstream 297143 20078088 ~ 20079882 (-)
G118434 NA other downstream 388857 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 878046 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1329308 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1531881 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 57692 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 107668 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 222228 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 263618 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 302399 20683666 ~ 20689922 (-)

Expression


Co-expression Network