AMCG00018787


Basic Information

Item Value
gene id AMCG00018787
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20458955 ~ 20466043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018787
ATGAGGGTTGTCGTGGCTGTGTGCTGTAATCTTTTGTTCATAGTGGTCGACATAGTAGTCaccacagtactgtacattcaTGGGACCAGGCTAGCCCTGTTTAAGGAGGACTTGCTCAACTTTGACATGTTCCATTCCACGCTGGACATCTGGGTGACAGTTTTGGTCAGGGCATCCTGGCTGCTAGGAGCCTGTGTTGGTGTGTGGAGAAACACAGCTGAAGGGCCCAAACGGGTGTCGACCTGTGACAGTTTGACCATCTTTCTGTGCCTGGTGATCATGGTGTACGCCATCACCAAGCTCCTGCTGTTTTCTGAGAATGGGGCCTCCCTGTCCAGTCCCTGGTTCCTGAGCCTGTTTACATGGACGTGTGTCTCCTCACTGGCAACAGTGTTTCTCTGGAAAGTGCTCGCCGCCGTCAAGCCATTGAGACGGAACTGGAAAAACCCACCAGCCAGCGAGAGCTCAGGAATAAAAGATCAGCTGCTGGGCTCGGAGGATGACGGGAGTGGAGGTCATGctgagagggaggaggaagTGAGGGATGAAGAGCAAAGCGACAAGGAGAACGGGAAGAAGGAGCCAAAGGGAGAGGCGCCAACTACGGCCACAGTGGGCCGACTCTTAAAGTACTGCAAAAAGGATGCTGGCCTCCTGGGAGTGGCCTTTTTATTTCTCCTGATTTGTGCTTTCTgTGAAGCCTTCATCCCTTATTACACTGGCCAAGCGATTGATGGGATTGTCATCCACAAGAGCATGGCTTACTTCACCCAACCCATTGTGATTTTAAGTGCGCTTGCTTTCGTGAGGTCGCTGATCCACCAAGAGATGGGATTCTTTGATGAGAATCACACAGGCGATATTATCTCCCGCCTGACCTCGGACACCACGCAGGTGAGTGACCTGATCTCAGAGAACATCAACCTGTTCCTGCGCAGCCTGGTAAAGAGCCTGGGCTACTGCGCCTTCATGTTCACCATGTCCTGGAAGCTCTCCCTGGTCACGTTCATGGGCTTCCCCTTCATCGCCATTAAACTGGCCAAGGATGTCCAGAATGCCCTTGCCCAAGCCAACAAGGTGGCAGAAGAGTGCATCTCGTCCATGAAAACGGTCAGGAGCTTTGCCAACGAGGAGCAGGAGGCAGACACATACTTTGGGAAGCTGCAGGAGATGTTCCAGCTGAATAAGAAGCAGGCCCTGGCCTACACCTGCTATTTCGGGCTTATGCAAGGAGTGGGGGCTGCGGAGAAGGTGTTTGAGTTTATGGACCGCAAACCGAAGCTGTTGAATGACGGCCAGCTGGCTCCAGACACTTGTAAAGGACTTGTGGAGTTCAAGAACGTGACATTCTCCTACCCTACACGCCCCGACACCCAGATATTAAAGAATGTGTCCTTCACAGTGAGGCCCGGTGAGGTGACTGCCCTGGTGGGGCCCTCGGGCAGTGGGAAGAGCTCCTGTGTCTGCCTACTGGAGAATTTATACAGGGCACAGGAAGGCGAGGTGCTGCTGGATGGCCGCCCAGTGCAGGACTACCAGCACAGCTACCTACACTCCAAGGTGTCTCTGGTGGGACAGGAGCCAGTACTGTTCGCCCGTTCCATTGAGAAGAACATCACCTATGGCCTGAGTGACTGTTCTTTCGAAGAGGTGGTTcaggctgcagtgcaggccaGTGCTAATGACTTCATAACTGAGCTGTCCTGCGGCTACAGCACAGGTGTGGGTGAGAAGGGCGCACAGCTGTCTGGAGGGCAGAAGCAGCGTGTAGCCATCGCTCGCGCTCTCATCAGGAACCCCCACGTCCTCATTCTGGACGAGGCCACCAGCGCCCTGGATTCAGAGAGCGAGCACATTGTTCAGCAGGCCTTGAGTGAGATCATGCACAAGAACACAGTTCTGGTGATAGCACACCGGCTGAGCACAGTGGAGCAAGCCAATAACATCATCGTGATCGACAAGGGCTGTGTGGCAGAACAGGGCTGCCACAAAGAGCTAATGGCCAAGGGAGGCCTATATTCCAAACTGGTTCAGCGACAGGTCCTGGGGATAGACACAGAAACTGTCATTCCGAAACCACCAATTAATTACACATGGCAGCTGGtgagaaagaaacacaaaaaacaggaaGGCAGTGAGTCGGAGGAAGATTTTCGCATGTAA

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031090 organelle membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046977 TAP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05656 ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018787 True 2163 mRNA 0.53 10 20458955 20466043

Neighbor

gene id symbol gene type direction distance location
AMCG00018786 denr coding downstream 77688 20377025 ~ 20381267 (-)
AMCG00018776 NA coding downstream 96019 20349576 ~ 20362936 (-)
AMCG00018779 rsrc2,LOC106585280 coding downstream 137324 20313185 ~ 20321631 (-)
AMCG00018778 NA coding downstream 149238 20303764 ~ 20309717 (-)
AMCG00018780 NA coding downstream 179417 20229171 ~ 20279538 (-)
AMCG00018785 NA coding upstream 5496 20471539 ~ 20476529 (-)
AMCG00018795 mphosph9 coding upstream 121546 20587589 ~ 20601750 (-)
AMCG00018796 sbno1 coding upstream 142852 20608895 ~ 20624686 (-)
AMCG00018798 NA coding upstream 171667 20637710 ~ 20641876 (-)
AMCG00018808 NA coding upstream 310876 20776919 ~ 20805326 (-)
G118536 NA non-coding downstream 241776 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 290624 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 305968 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 334467 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 377292 20081388 ~ 20081663 (-)
G118692 NA non-coding upstream 16841 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 140785 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 213237 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 214567 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 215081 20681124 ~ 20681365 (-)
AMCG00018788 LOC107579725 other downstream 338 20438959 ~ 20458617 (-)
G118477 NA other downstream 379073 20078088 ~ 20079882 (-)
G118434 NA other downstream 470787 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 959976 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1411238 19038557 ~ 19047717 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 22892 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 137452 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 178842 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 217623 20683666 ~ 20689922 (-)
G118727 NA other upstream 230791 20696834 ~ 20697827 (-)

Expression


Co-expression Network