AMCG00018791 (snrnp35,LOC102792111)


Basic Information

Item Value
gene id AMCG00018791
gene name snrnp35,LOC102792111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20642329 ~ 20645241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018791
CATCCCTGGCCAACCTGGCACCGACACCACGGAACCGAAATCGTGCGAGAACGGCTGGTGTTTCCACACGGAGTGTTTTTTAAGATGCGCTTCAAACGAGCCGCCTGCGGAATGAGAGCAGTGCTGTAGATCGAATAGGATTTCCATGGCGGAttatcaaaagaaagaaatcAGAATGAGTGAGTGGACCCCCGTGGCGACGGTGTACGACCCCCTGAAGGCGGGCAGCATCGACGGCACAGATGTGGAGCCCCACGACCGTGCAGTGTGGAGGGCCATGGTGGCTCGCTACGTCCCCAACAAGGCTGTCGTAGGCGACCCCCAGCTCACACTCTTCGTCGCCCGGCTCAACCGCCAGACCACAGAGGAGAAGCTGCGGGAAGTCTTCTCCAAATATGGCGACATACGGAGGCTGCGCCTGGTGAGGGACGTGGTCACCGGCTTCTCCAGGGGCTACGCCTTCATTGAGTACAAGGAGGAACGCTCGCTAATGAAGGCCCACAGAGACGCCAACAAGATGCTGGTGGAGCAGCATGAGTTGTTTGTGGACTTTGAGCAGGAGAGGACGCTCAAAGGCTGGGTGCCCCGTCGGCTGGgcggggggctggggggcaAGAAGGAATCGGGACAGCTGAGGTTTGGCGGGCGGGACAGGCCTTTCCGAAAGCCCATCAATCTGCCCCTGATGTCCAGCGACAGTAGAGCACCGCCCCAGGATCGGCCGCGTGACAGGAGGTGGgagaagggaggagagagggatgagaggCACAGAGACCGGGATcgtgacagagacagagacagatcccctgacagggacagggacagggacagggacagggaccgGGACCgggtgagggagaggaaggaagaGCGAGAGAGGGCGAGAGAACGGAGTGACAGGGAGTGGCAGAAAGACAAGAAAGGcagcaagagagaaagagagaggagcaAGGAGAGGGAATCGAGGAGAGAAAAGGATGAGGGCCGACGCAGGGACAAGGACAGGCACAAAGACAGGAGGTGAACTGTGGGGCGACTTCTCTACAGGATGTGTCCACGCCGGATGACTAAAGCAGTCAAAATTACAGAACTGACAATCTGTACTGTTTATGGCATTCATAGAACCCATGGTGGCATTCAGGCATTGTAAAACACATATCATCGTGCAGCAGTATTGCCATATCCTCTAGGCAGGAGCCACTGATGCAGCTATTTTAAAAGGGCTAAAGTAACTAAAGGAGGAAAGTAAAAGACTTCAGTCTGTGGACTCAAACTTGTGCCCTCAAACTCAGAAATGATGCGTCAAGGAATCCGAGGAGCTCAGTGTTACTCAGTCTTTGCTCCTCTCTACTTTCTAGTGGCAAATTGACACTGATGTAAGCCTGTAACAGAAGGATGCAgtctttgtattatttctccTGTGAAATGGGCTTGTTTATATTACTGTATGATGTTCCAAAGGGCAATAATGTCTGCTAATGTATCACCCCCCAGCCCATTGACTTTGCTGTAACATGCCACTTGTGTGACAGTTGAAACTAACAGCATTTCTAATCAATAAAGCAATGctgggtgattttttttttagtgttaaAATAATGGATAATTTTGTTTCATTGCACAATAATCAGATATACAGGACTATTTTTGCTTTAGAAGGTACATTTAGTGGAGGTCACAATCTTCTACCATTGACAATTTGAATAGGATTCTTTATATAGTGTAGAGCTCTTTGGTGTCTCTGAAGGGGATGCTGCTTGTCTGCAATGCTTGCTGCATATTACTGGGGGCTACTGCAATATATGTGTAAACAGTTTTGCTTATGAAAAGATTATAAGTACTTTATTAAGCAGGCATGTATGGAGTCCATATCATATTAGTGACCTGAAAAACAAGAGTATTTCCAAGGCACCCTTCACTTTTTAAATCCCTATCAATAtctacaataatacaaaaaaagaaagtgccTTTATGGAGAAAAGCTAAAGCATGTACAATAGAATTGCAAACAAAATTGACATTCTTAACAATATACACCTTcacacagttttgtttcttttaggaTAAGCTGGATGTCAAGTACAAGATTACAGCATCACAATGTTTTCTTGCTAGAATATAAGGCCAGAGCagttatggaaaaaaaatccctttaaaaaaaaaaaaaaaaaaagtatatata

Function

symbol description
snrnp35 Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP35 (small nuclear ribonucleoprotein U11/U12 subunit 35).

NR:

description
PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13155 SNRNP35; U11/U12 small nuclear ribonucleoprotein 35 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018791 True 2182 mRNA 0.48 2 20642329 20645241

Neighbor

gene id symbol gene type direction distance location
AMCG00018793 kmt5a coding upstream 4625 20631003 ~ 20637704 (+)
AMCG00018782 arl6ip4 coding upstream 157400 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 178980 20457965 ~ 20463349 (+)
AMCG00018783 NA coding upstream 208674 20408073 ~ 20433655 (+)
AMCG00018784 NA coding upstream 243992 20383129 ~ 20398337 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding downstream 25595 20670836 ~ 20678821 (+)
AMCG00018804 NA coding downstream 50441 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 52981 20698222 ~ 20705953 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding downstream 61256 20706497 ~ 20723114 (+)
AMCG00018806 rflna,LOC106585519 coding downstream 251673 20896914 ~ 20912077 (+)
G118644 NA non-coding upstream 21782 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 36232 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 41973 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 44211 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 44722 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 277127 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 725669 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 1036079 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1902031 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1912972 22558213 ~ 22558419 (+)
AMCG00018792 LOC106928543 other upstream 39014 20601956 ~ 20603315 (+)
G118636 NA other upstream 48190 20593366 ~ 20594139 (+)
G118635 NA other upstream 49313 20592736 ~ 20593016 (+)
G118623 NA other upstream 127838 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 267517 20372219 ~ 20374812 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 34039 20679280 ~ 20695194 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 78369 20723610 ~ 20772586 (+)
G118815 NA other downstream 542715 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1203129 21848370 ~ 21897700 (+)
G119507 NA other downstream 4588841 25234082 ~ 25267781 (+)

Expression


Co-expression Network