AMCG00018794 (cdk2ap1,LOC105905088,LOC105026112,LOC108438487)


Basic Information

Item Value
gene id AMCG00018794
gene name cdk2ap1,LOC105905088,LOC105026112,LOC108438487
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20603495 ~ 20606743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018794
GCGCCGCGGAGTGGCACGCGCGCCCATTGTCAGCTCGAGTTCCTGCGCGGGCCGCCTCGTGCTCTTTTATATCGTTTTATTCCGtcaaacacatttctgaaacaaCCCTGTTTTATACAGATATTGGGACATAGGCATACATTGTGGCGTAAACTACTAATTGTGCTGCTTTCACTGTCACTCGGAGGGAAACGACTTTGCATTCcatttgtttggctttttctttacattgagaattacataaatggaaattaaaacctAGCTCAGCGTACAATCACACGCTGCCGTTATATATTCTACTATAAGGTGCATGTGCATTTCTGTCAGTTCACCTAAATGACCGTCGGTGCATTTTCCCTAGCTTATAagtgattgtatttgtattttttttttcccaaagcagtacaaaatagttataattgCATGTTGATACATAAAACGTCCACGCACACCTTTGCTTTTTTACgcaacagaataaaaaaaaaaaatgtatagacaCATTTCTGCTTAAATGTAAGCTTTGATAATATTTTAGAagttaaaaactgaatttgatgTTGAATATTGTCTCATATTCATGTCTGACTGCAGCTGTAGCTACTACGAGAGGGCTAAGAAAAAGTGTTACAAAGTTTTACGTGGTTGGtaacttgtaaaaaaaaaaaatcaaggcttcgccaattattaaaaaaaaaaaaaaaccaaccttatttaaaaatagattattagactaaaattatatatttcttaaaaaaaatggagCGTTAATCATCGtggtgtttctgtgtgagtTTTGGGCACGACCCCGGTTTTTTGGTCAATTTGCCATAAATGTACCATTGTGATGATAGATTGCATTGTGGGTGTCAATATAAAGTGACGGCCATATTTGCCGGTGCTGCTGCTGTAAACAAAAAGtgtctgagagagacagagacgctTCAGTGAATTTcaggacatttttatttctttaatttataatgtCTCTGGGAATGTCTTACAAACCCAACCTCCACCCGCACATTGCTGGGACTTCCGTGAACACGGTGGGAAATGTGCATTCTCCCTCCACGAGCTTAGCAACGTTACAGTCCTACAGGCCGCTAGTGAACGACTACGGACCGCCCTCCTTGGGCTTTACACAGGGGACCAGTGGAAATCAAGTGCCTCAAAGTAAATATGCAGAACTCCTAGCCATTATAGAAGAACTGGGAAAAGAAATTAGACCAACATATGCAGGAAGTAAGAGTGCCATGGAGAGACTAAAACGAGgtATCATTCATGCTAGAGGGCTGGTACGGGAATGCTTGGCAGAGACCGAAAGAAATGCAAGATCCTAGCTCTTGGAGAAGCCCTTTCAAACTCCACTAAAGAATGAAAACTGAACAACATTTAGAATCCCTATCTTCTAACCATTCTATGTCAGGAGAGGCAGATAGCTTTCCTAATGAACAACACATTTGACGTCTGGCCTGAGGAATGCAGAAACTAAAGTTAAAGACCAGTATATGAAATTATACTTGACAGGAACCTCCAcggttttcttattttgttttttaattttgtttcccatTTGGGAATTTCTCAACCTTTCTTGACtgcttatataaaaaaaaaaaaaaaaaaaaaaaaaaacttttgcaTGCTTGGTAGCAAATGCTcccaattcattttaaaactgcatgGCTTGTACAGGTTTAGACTGTAGCAAGGGGCATTTAATGATGGATTAGGGTCCtaagatttaatatttttaacacaCTAATACTTAGGAGACTGAGAAAAGGATAGTGCCAAATATACAACATACGGATTTGGATAAACTATTGTAATAAAGCCATTATTTGcatctttgtatgtatttattactcaGCGTaataaaacttattttcatTAAGACA
>TU148729
gagagagacagagacgctTCAGTGAATTTcaggacatttttatttctttaatttataatgtCTCTGGGAATGTCTTACAAACCCAACCTCCACCCGCACATTGCTGGGACTTCCGTGAACACGGTGGGAAATGTGCATTCTCCCTCCACGAGCTTAGCAACGTTACAGTCCTACAGGCCGCTAGTGAACGACTACGGACCGCCCTCCTTGGGCTTTACACAGGGGACCAGTGGAAATCAAGTGCCTCAAAGTAAATATGCAGAACTCCTAGCCATTATAGAAGAACTGGGAAAAGAAATTAGACCAACATATGCAGGAAGTAAGAGTGCCATGGAGAGACTAAAACGAGgtATCATTCATGCTAGAGGGCTGGTACGGGAATGCTTGGCAGAGACCGAAAGAAATGCAAGATCCTAGCTCTTGGAGAAGCCCTTTCAAACTCCACTAAAGAATGAAAACTGAACAACATTTAGAATCCCTATCTTCTAACCATTCTATGTCAGGAGAGGCAGATAGCTTTCCTAATGAACAACACATTTGACGTCTGGCCTGAGGAATGCAGAAACTAAAGTTAAAGACCAGTATATGAAATTATACTTGACAGGAACCTCCAcggttttcttattttgttttttaattttgtttcccatTTGGGAATTTCTCAACCTTTCTTGACtgcttatataaaaaaaaaaaaaaaaaaaaaaaaaaacttttgcaTGCTTGGTAGCAAATGCTcccaattcattttaaaactgcatgGCTTGTACAGGTTTAGACTGTAGCAAGGGGCATTTAATGATGGATTAGGGTCCtaagatttaatatttttaacacaCTAATACTTAGGAGACTGAGAAAAGGATAGTGCCAAATATACAACATACGGATTTGGATAAACTATTGTAATAAAGCCATTATTTGcatctttgtatgtatttattactcaGCGTaa
>TU148730
gagagagacagagacgctTCAGTGAATTTcaggacatttttatttctttaatttataatgtCTCTGGGAATGTCTTACAAACCCAACCTCCACCCGCACATTGCTGGGACTTCCGTGAACACGGTGGGAAATGTGCATTCTCCCTCCACGAGCTTAGCAACGTTACAGTCCTACAGGCCGCTAGTGAACGACTACGGACCGCCCTCCTTGGGCTTTACACAGCAGGGGACCAGTGGAAATCAAGTGCCTCAAAGTAAATATGCAGAACTCCTAGCCATTATAGAAGAACTGGGAAAAGAAATTAGACCAACATATGCAGGAAGTAAGAGTGCCATGGAGAGACTAAAACGAGgtATCATTCATGCTAGAGGGCTGGTACGGGAATGCTTGGCAGAGACCGAAAGAAATGCAAGATCCTAGCTCTTGGAGAAGCCCTTTCAAACTCCACTAAAGAATGAAAACTGAACAACATTTAGAATCCCTATCTTCTAACCATTCTATGTCAGGAGAGGCAGATAGCTTTCCTAATGAACAACACATTTGACGTCTGGCCTGAGGAATGCAGAAACTAAAGTTAAAGACCAGTATATGAAATTATACTTGACAGGAACCTCCAcggttttcttattttgttttttaattttgtttcccatTTGGGAATTTCTCAACCTTTCTTGACtgcttatataaaaaaaaaaaaaaaaaaaaaaaaaaacttttgcaTGCTTGGTAGCAAATGCTcccaattcattttaaaactgcatgGCTTGTACAGGTTTAGACTGTAGCAAGGGGCATTTAATGATGGATTAGGGTCCtaagatttaatatttttaacacaCTAATACTTAGGAGACTGAGAAAAGGATAGTGCCAAATATACAACATACGGATTTGGATAAACTATTGTAATAAAGCCATTATTTGcatctttgtatgtatttattactcaGCGTaa

Function

symbol description
cdk2ap1 Enables DNA polymerase binding activity. Involved in positive regulation of protein phosphorylation. Located in cytosol; nucleoplasm; and perinuclear region of cytoplasm.

NR:

description
PREDICTED: cyclin-dependent kinase 2-associated protein 1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018794 True 1901 mRNA 0.38 4 20603495 20606743
TU148729 False 955 TUCP 0.39 4 20603518 20605820
TU148730 False 958 TUCP 0.39 4 20603518 20605820

Neighbor

gene id symbol gene type direction distance location
AMCG00018795 mphosph9 coding downstream 1745 20587589 ~ 20601750 (-)
AMCG00018785 NA coding downstream 126966 20471539 ~ 20476529 (-)
AMCG00018787 NA coding downstream 137452 20458955 ~ 20466043 (-)
AMCG00018786 denr coding downstream 222228 20377025 ~ 20381267 (-)
AMCG00018776 NA coding downstream 240559 20349576 ~ 20362936 (-)
AMCG00018796 sbno1 coding upstream 2152 20608895 ~ 20624686 (-)
AMCG00018798 NA coding upstream 30967 20637710 ~ 20641876 (-)
AMCG00018808 NA coding upstream 170176 20776919 ~ 20805326 (-)
AMCG00018807 ncor2 coding upstream 315630 20922373 ~ 21012691 (-)
AMCG00018810 NA coding upstream 535312 21142055 ~ 21146883 (-)
G118692 NA non-coding downstream 118389 20482884 ~ 20485106 (-)
G118536 NA non-coding downstream 386316 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 435164 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 450508 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 479007 20116451 ~ 20124488 (-)
G118696 NA non-coding upstream 85 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 72537 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 73867 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 74381 20681124 ~ 20681365 (-)
G118718 NA non-coding upstream 74800 20681543 ~ 20681784 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 79676 20488935 ~ 20523819 (-)
AMCG00018788 LOC107579725 other downstream 144878 20438959 ~ 20458617 (-)
G118477 NA other downstream 523613 20078088 ~ 20079882 (-)
G118434 NA other downstream 615327 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 1104516 19467768 ~ 19498979 (-)
AMCG00018797 NA other upstream 38142 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 76923 20683666 ~ 20689922 (-)
G118727 NA other upstream 90091 20696834 ~ 20697827 (-)
G118936 NA other upstream 1473721 22080464 ~ 22113695 (-)
G119144 NA other upstream 2197602 22804345 ~ 22806338 (-)

Expression


Co-expression Network