AMCG00018796 (sbno1)


Basic Information

Item Value
gene id AMCG00018796
gene name sbno1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20608895 ~ 20624686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018796
ATGACTTACTGTAGGTCACATATGATGGATCCTGGTCAGGATTTGCTCCTTGCTGCTCTGAGTGAGAGTGGCATCAGCCCAAATGATCTATTTGATATAGACCCAATGGACACTGCTGTGCCATCAGCTGTACAACAGTCAGTGCCTATAAGTGCCCTGGATTGTGGTCTGGGAACAGAACCAGCAGCAACCGTGAAGCAGGAACCCATAGTGACAATAAAGCAGGAACCAGCTGGCCCACCCACTCCTACAGTCACTGTCAGGAAACCTCAACCATCGAccacaacatttgttttgaatcagCTCAATCAGCTGCCCTCCCTGGGAACAATAGTTGTGACCAAACCATCTGTTGGTACCACATCTAGACAGACCATTACAGTGGCCAAGGTGGTTCACACCTCCACTACACCAAAGGCACCCACTACCACTGTGCGGACGACCCTGATACCGCCCAATAAGGACCAGATCCCACTGAAAGATCTGCTCAAGTCCAGCAGCCTCAATGAGCTGATGAAGCTCAAACCACCTCCAAATATTGCACAGCCTGTGGCAACAGCTACCAgttaTAGAgaagtgtcagtcaCTGAATTAAATAATGGTGTAAAAAAGGAGGTCTCAAACAAAGATGTAGCAAGAATTTGGGTCAATGATGACATTAAAATGAGGAGCTTTTCACCTACAAATAAAATACCAGGCATTAAAGAAGAGGAAGAACccgaagaggaggaggatgaagagcTGGGTCATGCAGAGACATATGCTGAATACATGCCTATGAAATTGAAGATTGGCCTGCGTCACCCAGATCCGGTAGTGGAAACCAGTTCACTGTCGAGTGTATCCCCTCCTGATGTGTGGTACAGGCTGTCTATTACTGAGGAGACCATTGACAGAGGGTGGCTTTCGGCATTGCAGCTAGAGGCCATTACATATGCTGCTCAGCAACATGAAACATTCCTTCCAAATGGGGACAGGGCAGCCTATCTAATAGGTGATGGAGCTGGAGTTGGCAAGGGCAGGACCATAGCAGGAATTATGTATGAGAATTACCTTCTTGGCAGGAAGAGAGCGCTATGGTTTAGTGTTTCCAATGATTTGAAGTATGATGCTGAAAGGGACCTCAGAGACATTGGAGCTAAAAACATCCAGGTTCATTCACTTAATAAGttcAAATATGGGAAAATATCTTCGAAGCACAATGGGAGTGTGAAGAAAGGTGTCATTTTTGCCACATACTCTTCTCTGATTGGGGAAAGTCAGTCTGGAGGAAAATACAAGACCAGATTCAAACAGCTTCTTCACTGGTGTGGAGAGGATTTTGATGGAGTGATTGTCTTTGATGAATGTCACAAAGCTAAAAATGTCTGCCCGATTGGTTCTTCCAAACCAACCAAGACTGGCTTGGCTGTCTTAGAACTCCAAAATAAGCTACCAAAGGCGAGGGTGGTATATGCCAGTGCTACAGGAGCCTCTGAGCCACGGAATATGGCATATATGAATCGGCTTGGAATTTGGGGTGAAGGAACTCCATTCAAGGAGTTCAGCAATTTTATTCAAGCTGTGGAAAGAAGagGTGTAGGTGCCATGGAAATAGTTGCCATGGATATGAAGTTGAGGGGGATGTACATTGCAAGACAACTGAGCTTCGCTGGAGTGACCTTCAAGATCGAAGAGGTCCCTTTGACACTGGACTACATTAAGATGTACAACAAGGCAGTTCGTTTGTGGGTGAGTGCCAGAGAGAAGTTTCAGCAGGCGGCCAACCTCATGGATGCAGAGCTGCGCATGAAGAAGTCCATGTGGGGGCAGTTCTGGTCCGCACACCAGCGCTTCTTCAAGTATCTGTGCATCGCGTCGAAAGTGAGGAGAGTGGTCCAGCTAGCAAGAGAAGAgataaaaaatggaaagTGTGTGGTCATTGGTCTGCAGTCTACTGGAGAAGCTAGAACACTggaggctctggaggaaggaggaggagaattAAATGACTTTGTTTCAACAGCGaaggGTGTACTGCAGTCCCTGGTGGAGAAACATTTTCCAGCCCCTGACAGACAAAAGCTCTTCAGCTTGTTAGGAATTGATTTATCAGCGAAGAAAACGCCGTCCCCTAATGACAGTGCTTCTACAGACCAGAAGGGAAAGAAACGGAAAGGTCAAGATACAAAAAAGGAAGCGAAAAAGCCTCGCAAATCAGGCGGTCTCTCAGGCAGCAGTTCCGACGAGAGCCCGAGTGATTCGGAGGCTTCAGAGAAGGACGCGTCCAGCGATAATGACAGCTTCAAGTCAGTCAGCTCGGGCGAGGAAGACGAGTACAATCCCTTCAGAGATGAATCCAGTGAGAATGAAGAAGATGaTCCATGGTTGATTAGAAAAGGGCAcaagaaaggaaaggagaagaacaaaaagaaaaagaagcgTATAGATCCTGACTCTATTCAGAGTGCCTTGTTAGCATCTGGTCTGGGTTCCACACGGCCTGCTTTTACTACTCCAGTTGTTAAAACGCCATCAGTCAGCACACCTGCTGtaaaaaaagaaagcgaCAATAACAGCTGTGTGACTAGCCAAGACGCTGTTGAAAATGCCCAACAGATGAAACGAGAGTTACTTGAAGAACTGGAAAAGCTTTCTGAGGTTCTCCCACCCAACACTCTAGATGAACTGATTGATGAACTGGGCGGTCCAGATAACGTGGCCGAGATGACTGGACGGAAGGGCAGAGTTGTGAGCAATGATGATGGCAGCATATCTTATGAGTCAAGGTcagagcttgatgttcctgtggaAATCCTGAATATCACTGAAAAACAGAGGTTCATGGATGGAGAGAAGAACATTGCCATCATTTCAGAAGCCGCCAGCTCTGGTATTTCATTGCAAGCAGACAGGAGAGTTAAAAACCAGAGGAGGAGAGTGCACATGACCTTGGAGTTGCCATGGAGTGCTGACAGGGCCATTCAGCAGTTTGGAAGGACACACCGATCGAATCAGGTGACGGCTCCAGAGTATGTGTTCCTCATTTCTGAGCTGGCTGGAGAGCAGCGCTTTGCCTCCATTGTGGCCAAGAGGCTTGAGAGCTTGGGTGCCCTTACCCACGGTGATAGAAGAGCCACTGAGTCCAGAGATCTGAGCAGGTTCAACTTTGACAACAAGTATGGACGAAATGCCCTGGAGATTGTGATGAAGTCCATTGTAAATTTGGATTCCCCCTTGGTATCGCCACCTGCTAACTTTGATGGTGATTTCTTCAAAGAAATCCGTCATGGTTTAATTGGTGTGGGGTTAATAAATGTGGAAGATCGTTCAGGGATCCTCACTTTGGATAAAGATTATAACAATATTGGCAAGTTCCTGAATAGGATTCTTGGCATGGAGGTCCAACAACAGAATGCACTATTCCAGTATTTCTCTGACACGCTAAATGCAGTTATTCAGAATGCCAAAAAGAATGGGCGATATGACATGGGCATTTTGGATCTTGGCTCTGGTGATGAGAAAGTAAAGAAATGTGATGTGAAGAAATTTCTCACACCTGGATATTCTACCTCAGGACATGTGGAGTTGTATACAGTAAGTGTGGAAAGAGGTATGTCTTGGGAAGATGCTACCCGGATTTGGGCAGAACAGATGGGACCAGATGATGGCTTTTATGTGCAGGTGAGAAATAACAAGAAGACGGCTATCCTAGTGAAGGAAGTCAACACCAAAAAGAGATTGTTTCTTGTGTACAGGCCAAACACAGGAAAGCAATTGAAACTCGAAACCTATGCAGACATTCGGAAGAAGTgtaaaaagGTACTCTCAGAGGATGCTAAGCAGCACTGGATAGATCAGTACGTCTCTTCGGCTGACATCTGTTCTCATGCCTATTGGCGAGGTAACTGCAAGAAGGCCTCAATAGGACTTCAGTGTGAGATTGGTCTCCGATGCCGAACATACTTTGTCCTGTGTGGCTCAGTTCTTAGTGTCTGGACTAAAGTAGAGGGCGTTCTGGCTTCTGTCAGTGGCACCaatgtgaaaatgcaaattgttcGATTAAGAACGGAGGATGGACAGAGAATCGTGGGTTTGATCATTCCTGCAAACTGCGTGGCTCCACTGACCAACATACTGTCCTCCTCGGACCAGTCTCAGCAGCTGgcagtgcagcagcagcaaatgTGGCAGCAGCTTCACCCACAGAGCATTAACCACTTCAGTAACACATAG

Function

symbol description
sbno1 Predicted to enable chromatin DNA binding activity and histone binding activity. Acts upstream of or within neural plate anterior/posterior regionalization. Predicted to be active in nucleus. Is expressed in central nervous system; eye; immature eye; neural tube; and otic vesicle. Used to study schizophrenia. Orthologous to human SBNO1 (strawberry notch homolog 1).

NR:

description
PREDICTED: protein strawberry notch homolog 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018796 True 4215 mRNA 0.47 33 20608895 20624686

Neighbor

gene id symbol gene type direction distance location
AMCG00018795 mphosph9 coding downstream 7145 20587589 ~ 20601750 (-)
AMCG00018785 NA coding downstream 132366 20471539 ~ 20476529 (-)
AMCG00018787 NA coding downstream 142852 20458955 ~ 20466043 (-)
AMCG00018786 denr coding downstream 227628 20377025 ~ 20381267 (-)
AMCG00018776 NA coding downstream 245959 20349576 ~ 20362936 (-)
AMCG00018798 NA coding upstream 13024 20637710 ~ 20641876 (-)
AMCG00018808 NA coding upstream 152233 20776919 ~ 20805326 (-)
AMCG00018807 ncor2 coding upstream 297687 20922373 ~ 21012691 (-)
AMCG00018810 NA coding upstream 517369 21142055 ~ 21146883 (-)
AMCG00018809 NA coding upstream 523846 21148532 ~ 21175765 (-)
G118696 NA non-coding downstream 1809 20606828 ~ 20607086 (-)
G118692 NA non-coding downstream 123789 20482884 ~ 20485106 (-)
G118536 NA non-coding downstream 391716 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 440564 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 455908 20152727 ~ 20152987 (-)
G118715 NA non-coding upstream 54594 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 55924 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 56438 20681124 ~ 20681365 (-)
G118718 NA non-coding upstream 56857 20681543 ~ 20681784 (-)
G118719 NA non-coding upstream 57393 20682079 ~ 20682291 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 2152 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 85076 20488935 ~ 20523819 (-)
AMCG00018788 LOC107579725 other downstream 150278 20438959 ~ 20458617 (-)
G118477 NA other downstream 529013 20078088 ~ 20079882 (-)
G118434 NA other downstream 620727 19987674 ~ 19988168 (-)
AMCG00018797 NA other upstream 20199 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 58980 20683666 ~ 20689922 (-)
G118727 NA other upstream 72148 20696834 ~ 20697827 (-)
G118936 NA other upstream 1455778 22080464 ~ 22113695 (-)
G119144 NA other upstream 2179659 22804345 ~ 22806338 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003079 sbno1 coding NC_007121.7 CM002894.2 44309997 ~ 44355534 (-)