AMCG00018797


Basic Information

Item Value
gene id AMCG00018797
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20644885 ~ 20678437 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018797
CCTCGGCTGTCTTTCTGGGATTCGGCACATGCGCAGTGCGTACCTGCCATGTAGCCCGAGTGGGGCACAGCAGATTTGGGATTGCAATGGAACCGCTTCAGTTTTTATCTCATTAATCTCCAATTCCCCACAAAATGGCTGCGACAAAACTGTCAGCTATATTAGTATGTGCCTAAAGAAAAGTCCAGGTCCAGCTGTCGAAATACAATATCTGAGAGAGACGCGTTAATGCGGGCTTCTTCAGTTAGGCGGAGGAAGTTTGTCCTGCTGTGGGAAACGCACACAACCGGATCCGATCTGTATTAGCAGGAGACGGAGCCGCCAGTCATGGACGATTTCGGGTCGGCGCTGCACAAGAGCGCCACGGAGCTGACCGTCATGGACGTGTATGACATTGCCGCAATGGTGGGGCACGATTTCGAGAGGATCATCGACCGCCACGGGTCCGAGGCGCTGGAGGAACTGATGCCCAAAGTGGTCCGGGTCCTGGAGATCCTGGAGGTGCTGGTCAGCCGGAGCAGCGCCAGCCCCGAGACCGAGGAGCTGCGGCTGGAGCTGGACCGGCTGCGGCTGGAGCGGATGGACCGGCTGGACAAGGAGAAGAAGCACCAAAAGgagctggagctggtggAGGATGTGTGGCGAGGGGAGGCCCAGGACCTGCTGTCCCAGATCGCTCAGCTGCAGGAGGAGAACAAGACCCTGCTCACCAACCTCTCCCTCAGGGACACCAGCATGACTGAGGAGGACCTGCAGAGGCAGGAAGGCATGTCAGAGCGGGAGAGGCAGGTGATGAAGAAGCTGAAGGAGGTGGTGGACAAGCAGCGGGACGAGATCCGAGCGAAGGACCGTGAACTGACACTGAAGAACGAGGACATTGAGGCAttgcagcagcagcagaaccGGTTAATGAAGATCAACCATGACTTGCGACACAAGATCACGGTGGTGGAGGCACAGGGCAAGGCTCTGATCGAGCAGAAGGTGGAGCTGGAGGCCTTCGCTCAGACCCGCGAGCAGGAGCTGGGCAGCCTGAGGCAGGAAATCGGCAAGCTGAGGGACCGGCTGCAGGGAGAGTTCAGCCAGAATGGACAGGAACCCAAGATCGAGCGCTTTGAGCCAGTTCAGCGGCTATCCCTGTTCCCTCGGATTGTGGAGGTGGAAAATGAGGATGAGGAGGATGACAATGATGATGCTgatgagcagcagcagcagcaggaggaggaggaagaggcagTGATATGGGAGCCGGTGTGCGAGGAGGACCTGGCGACAGAGAGGGCAACACTTGACCTGACGGATCCCAACCGCCCACGCTTCACCCTGCAAGAACTGCGGGACGTCCTGCACGAGAGGAATGAGCTCAAGGCGAAAGTCTTTATGTTGCAGGAAGAGTTAGCCTATTATAAAAGTGAGGAAATTGAGGAAGAGGGCAACCCCTCAGCTCCGTCCCCTTCCCCCAACCTGCAGCCCAGACCGGCCACCCAGCCTGAGTCAGGGATCAAACGCCTGTTTAGCTTCTTCTCCCGAGACAAGAAACGCAACTCCCAGAGAAACGTGCGATTCGAGGAGATGCTGGGTGGCTGGGCGAGCAAAGAAGATGTGTACACAGAACAGGCACAGGAGGCCCTACAGCACCTCTGAACCGCGGACAACACCCcccatgcacacatacacacgctgCTGCGCACTGCCGGGCTCATAAACAAACGCTGGGATACAAAACCCTCACATGCACCGTAAGGAGAAGAGAtggcattaaaacaaactgaaaaagaacCGCATAAAGAGCAAGCTAACAGGAAGAACAAGTCCCAACAGAGGGCATCCAAACCCCAACCTTTACCACACTCCACAGTATTAACAGCCAGTTGGAAAATGCTTGCTAGCTTCTGATTCATTTTGAACAGCTGCACCACATCTGGgcagtctttttttgtttgtttgtttctcattcACCAGTATGGCTTCTTTCGTGCCAATGTGTGCATGGATTACAAAAATGCAGCTCAAGTTAACATCCCACCTGTTGGGATATGGTTGGTGTTACTTTAGACCGTAAGGACACTTGTGAGTGTTCTGAAACTGTAAACAGGGACATGTTGCAAATTAGTTTGCCTGGATTAAAGTCACTGGCACCTCACACAGCTGCCCACCACCTGCAGTAAAATAGCATCAGTGCTGGGGAAGAGCTGTGTCTAAGGACAAGCTGATGAGGTTTGGGGGACAGAGAGTAGTGCAGAGTATACAGACCTGGCTGCAGAACCGCTGGGAGAGGAAGCTTTTcaaataagcaaaaataaataatgtataataaaaaagaaaaggggcaGTGGCTCAGTTCTGCATTCTCCAGTTTACTCTTATTGTTCAGCATAAGGTGCACTGGTCTTAATATCAAACAATCATGTAAGTAAGATTGACAGGCAAGTGAAGCTGAAACGGGACTGGGAGGGGATCAGAGCCAGAGCGAgagaaaggaggaaaacaaaaatgttgtgaTGGAACGTGGAAGTTGCTTACAAAGAGTGTGGAGTAAGTGGGAGCAAAGTTGTACATGGGTGTACAATGTAAGGAGAGAGATTGCAGGCAAGTAGATAGCAGTGGCAAAGTTAATTTCACCAAGATCCAAAAGGGTACTGATACAATAAGACCAGTAATCCCAAAGAGCCGACTGAAGTGTTTAATTATTCAACGAAGGAATACTAATCAGTTGTTATTGGTCTCTGACACTTTAAAGTGACTAATTGACCATccatgtgtattatttatttcttagcacaTCCCCTTAaacagggtgacttacagtttacataaacatttcaaagcattacaaagtgcagtggGCATTAGGCAGTATGGGATGTGCGAGTACAGTATTTGGTTTTTAAGTACCTTGGGCTCAATTATAGACTTAGGATATAGGATTAAATGAATGCCACAAAGAAGGTCTGTATCTCTGCCCTGTTCTTTTATCCCATCAATGGATATACTGAGCTCTTTCTTTGCAGCCAAAAGGACTGTGAAGTGACTTTTTTTCCAGATGTCTAGTGTTTTGTCCTGGGCTGCAagatttcaaaatgaagaaGTACATTGATTGTACAGAGTTAGAATGCCTAAGAATTAGTTTCTAGGAGTTGCACTGTGACACTGTGGAACAGGTCTGAAGGGGAAAGCACAAACTGGACTTAAGTGTCTCACCTACCTACATTGGAAGACCAGCACTCATGTCTTCACCAGCACTTTTcagaaacaggaagtggaacTTCATCTCTGCAAACTCAGAGGACTACCTTTCTATTGTGGACATGCATCTCAGACACCCCCCTCGGCTGACTAGGGAGAGAAAACAATCTATTAGTGAATATTGGACAACAGACATGCATGTGGAATATATGCCTTTAGGAAACTGtgcctttattaaaacaaggaaaccagaaataaatccgggggtgggtggggggttgctAGGGAcataaactaatttaatgaCTACACTTTAAACCACATGCCCCATCAGTCGGAGAACCACTAGGCCTGAGTTCAATCTAGATTCCAATCCACTTCTCAGTTTTACATAACAATCCTAGAACTTCTTAGCAGCTTTCTGTGTTTGCTTCTATCCAATGGAAAACTGCCATGTAGGTCAGtaatttgtgttaatttgtattGTCCCGTTAATctaaaactatttattaatgAGAACGAAAATCTGCACACTTGTTCAGTTCCCATAGCTCAACCCAAAGCAACTGAGGTGGAAGTCCTAGATACACAATCAGTATGGTTTAGTCAAATTTCAGAACGGTTATTTTTCACATTATAGAAAaggtttgatttttgtttgttttttccccactttttGGCCTTTAGTGCAGTGGTGTCTGTTGCAATGCCTTCATTTATGGTTGCCAAAGTTCTGTGACTTAAAGTTTAAAGtggtttctgtacattttttgtttttttacaaatgctCAGCACAGTATTAACTGCAGCAAGCCAAACAGAGCACGAGGAGTAGCTCAGCCTCGACTTTCCACGCTGGTACTTtaccaaatacaaatgttgagATTGGATAGGGAAACTGCACTGCTACAATGAAAGgggcaaaaataaacaattgtgcCAAATAAAGGGTACAAAAAAACCTACAAATCTactaatttgcattttcaagtCAGATTCAAATGACAGAATTATGAACAtgatatatatacttttttttttttttttttt
>TU148739
ttgtgtttattatttactaaACCTGGGTCATATTTGACATAcatcagcattttgtttttactttacatctttacatttcaaatctgaGGTGTCAGCTGTTACacaaaaatatttctgtaatgGCAGGCAGCAGTCATCTGGCCTAATTCACAGACTGCTGCCACCTCCATTTCCCCCAAAGTAACAAAATGTTTACCTGGAACATGAATACCTGTAACAAATAGGAAATTAATTGTACAAAATTGTGTTGCCATttgtaaaggattttttttttttcttttagacaaaaaaaataatacaagcaACTAATTTACACCAGTCACAACATTATCCTGATCCACACCCACACCTTTGAACTAATATGTACTTTATGTGTTAAACCCATCATTAAGatactggggaaaaaaagacccCCCAACCTCCCTTCCACCCCACCCTGTCCCCAGACAGAAACATTCTCTATGTGCCTTGAATGTGGAAAGAAATAGACTTCCTTGGaccaatatgaaatatgaaagggACGGTGGGAATTCAAATTGTGTCTGTTTACATCAAAGAACGGCTAAGATCCTTTCCACAAGGTCACTTATCAAAggaaataaagataattaattaGCTTGTGACCACACAGCAGTCTCGACTCATGAGTcattgacattaaaaaaagaaaagaaaaagaaaaagaaagcagttACTGTATATTATCAAGTTGCAATTTTCATTGTAGCCATTAGAGTCCAGCACTGATTCCAGTCTGACGTGATCTAGACCAGAAAATAAATCAGGCAAGCtaggtgtattttaatgattgtttcCCTCCAGATGTATTCCTCTTCAAACCCATTTAATACCTGTAGTTTGCAAACAAGAGAGAAGAGCTGTTGGTTGCGGCAGGCCTGTCTTCACCATTTTGGATGCCgcaaaatcaaaattaaaaccttGCAAGTTTAAAACCTAATAAATAGCCTTCTCCAAACTCTACAGGTTTGTATCTGCCAACGAGCTGAACAGCTTCAATGTTAACATGaccttgcctttttttttttttttttttttttttttttaaagggattttttttccataactGCTCTGGCCTTATATTCTAGCAAGAAAACATTGTGATGCTGTAATCTTGTACTTGACATCCAGCTTAtcctaaaagaaacaaaactgtgtgAAGGTGTATATTGTTAAGAATGTCAATTTTGTTTGCAATTCTATTGTACATGCTTTAGCTTTTCTCCATAAAggcactttctttttttgtattattgtagaTATTGATAGGGATTTAAAAAGTGAAGGGTGCCTTGGAAATACTCTTGTTTTTCAGGTCACTAATATGATATGGACTCCATACATGCCTGCTTAATAAAGTACTTATAATCTTTT

Function

GO: NA

KEGG:

id description
K20173 RILPL1; RILP-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018797 True 4236 mRNA 0.47 8 20645214 20662242
TU148739 False 1393 lncRNA 0.35 2 20644885 20678437

Neighbor

gene id symbol gene type direction distance location
AMCG00018798 NA coding downstream 3009 20637710 ~ 20641876 (-)
AMCG00018796 sbno1 coding downstream 20199 20608895 ~ 20624686 (-)
AMCG00018795 mphosph9 coding downstream 43135 20587589 ~ 20601750 (-)
AMCG00018785 NA coding downstream 168356 20471539 ~ 20476529 (-)
AMCG00018787 NA coding downstream 178842 20458955 ~ 20466043 (-)
AMCG00018808 NA coding upstream 98482 20776919 ~ 20805326 (-)
AMCG00018807 ncor2 coding upstream 243936 20922373 ~ 21012691 (-)
AMCG00018810 NA coding upstream 463618 21142055 ~ 21146883 (-)
AMCG00018809 NA coding upstream 470095 21148532 ~ 21175765 (-)
AMCG00018811 NA coding upstream 498395 21176832 ~ 21180489 (-)
G118696 NA non-coding downstream 37799 20606828 ~ 20607086 (-)
G118692 NA non-coding downstream 159779 20482884 ~ 20485106 (-)
G118536 NA non-coding downstream 427706 20214770 ~ 20217179 (-)
G118518 NA non-coding downstream 476554 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 491898 20152727 ~ 20152987 (-)
G118715 NA non-coding upstream 843 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 2173 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 2687 20681124 ~ 20681365 (-)
G118718 NA non-coding upstream 3106 20681543 ~ 20681784 (-)
G118719 NA non-coding upstream 3642 20682079 ~ 20682291 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 38142 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 121066 20488935 ~ 20523819 (-)
AMCG00018788 LOC107579725 other downstream 186268 20438959 ~ 20458617 (-)
G118477 NA other downstream 565003 20078088 ~ 20079882 (-)
G118434 NA other downstream 656717 19987674 ~ 19988168 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 5229 20683666 ~ 20689922 (-)
G118727 NA other upstream 18397 20696834 ~ 20697827 (-)
G118936 NA other upstream 1402027 22080464 ~ 22113695 (-)
G119144 NA other upstream 2125908 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 4396961 25075398 ~ 25084586 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000177_00081319_00089885 RILPL1 coding CI01000177 null 81319 ~ 89885 (+)