AMCG00018800 (ddx55,gtf2h3,eif2b1)


Basic Information

Item Value
gene id AMCG00018800
gene name ddx55,gtf2h3,eif2b1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20679280 ~ 20695194 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018800
TTCTGATCATGACACTATTTTTCATAACAGCAGTGCGATGAGAGCGACTGTCTGCCATGCATTGTGAGACGGAACCGACAtgtttgctgctgttgctgcccGGGACGTTTTACAGTGAAACAGGAAGGCGGAACAGCGTGTTTGTGCCACAGtggtgtttttgaaaaaaaaatggagaatgTTACTGAAGGCAGATGGGAAAGTTTACCCGTTAAACTTCACGACAGTATTTTACAAACGCTCCGTGACCTAGGTTTTAGTCACATGACTCCAGTCCAGGTGACCGGGAGTGGAAAGACATTGGCATTTGTCATCCCTATACTGCAGATTTTGCTGAGAAGAGAggagaaactgaagaaaaagcAGGTTGGGGCTCTGATTATCACTCCCACACGTGAGCTGGCCTCTCAGATTAGTGGGGTCATGGCATCCTTCCTCCAGCACTTCCCTCAGTTCAGTCAAATCCTTTTAATCGGAGGCAGTAATCCAATCGAAGACGTGGAGAAATTTAAAGAGCATGGGGGGAACATTGTGATCGGCACTCCAGGCAGGCTGGAGGACATGTTCCGGAGGCAGGCAGACGGGCTGGACCTGACCGGCTGTGTGAAGGCCCTGGATGTGCTAGTTCTGGATGAGGCTGACCGGCTGCTGGACATGGGCTTTGAGGCAAGtCTGAACGTCATCCTGGGCTACCTGCCAAAGCAGCGGCGCACAGGGCTGTTCTCGGCCACGCAGACACAGGAGCTGGAGAAGCTGGTGAGGGCCGGCCTGCGCAATCCTGTCCGCATCATCGTCAAAGAGAAGGGTGCGGCAGACACTAGCACTCAGAAGACCCCGTCCCGCCTGCTCAACTACTACACTGTGTGCAGGACAGAGGACAAGTTTAACCGGCTGGTGGCTTTCCTGCGGCAGCACAAGCACGAAAAACACCTGGTCTTCTTTAGCACCTGCGCCTGTGTGGAGTACTATGGCCGGGCCCTGGAGGCTCTGGTGTCAAAAATTAAGATCCTCTGCATCCATGGGAAGATGAAAGACAAGCGCAACAAAATCTTTACTGAGTTTCGGGCTTTAAAGAGTGGGATTCTGGTGTGCACCGACGTCATGGCCCGAGGGATCGACATTCCCGAGGTCAACTGGGTTATACAGTACGACCCTCCCAGCAGCGCCAGTGCCTTTGTGCACCGCTGCGGACGGACAGCCCGTATCGGCAACCAGGGCAATGCTCTAGTGTTCCTGCTGCCGATGGAAGAGGCTTACATCAACTTCCTGTCCATTAACCAAAAATGCCCCCTCCAGGAGATGGCACCAGTGAAGGACGTGGTGGATGTGCTACCCAAGCTGAAGGCCATGGCACTTGGGGACAGGGCCGTGTTCGAGAGAGGCATGCGGGCCTTTGTCTCCTATGTCCAGGCCTATGCCAAGCACGAGTGTAGCCTCATCTTCAGGGTCAAAGATCTGGACTTTGCTGCTCTGGCTCAGGGGTTTGCGTTGATCAGGCTACCCAAGATGCCCGAGCTGAGAGGGAAGCCACTGCCCAACTTCACCCCCGAGCCCATTGACACGGACACCATCCGATTCAAAGACAAGAACAGGGAGAGGCAGCGGAAGAAGATGCTGGCCGAGAAGCGGGAGCAGGAAAAGGACAGGCCGCAGCTGGGCAGGAGGCACTTAATCAGAAACAAATCGTGGTCCAAACAGAAGACCAAGAAAGACAGGAGGAAAAAGCTGGTGgccaaaaggaaaaaagacGAGGGCTCAGACATTGATGACGAGGACATGGACGAGTTGCTCAGTGACACCAGGCTGCTGAAAAAGCTGAAGAAGGGCAAGATCAGTGAGGAGGACTTCGAGAAGCAAGTGACGGCGAGCCAAAAGTCACAATCGGGCAGAAAGACAGGCGCCGAACAGCATGGGGCTGAATCGGATATGGAAGGCGACGAATGAAAATTAGTTGAAATGATAACGATGAaccatttttgtgtgtgtaatataaacataaatgaagagaaaaaccTAGAGCTTCCAGATGGACTTTTTGGAAGTCTCATCTTCTCCGGAAATGCACCATCCTGTTCCCATTTGAAAGCCCGTTGTTTCGGTGTGGTGCTGCACCGGTATGGACAACACTGCAGTGGCTGCTCTAGGGTGGCTTGCTGTGTTTACTGCTGCTGCATCTCAGCACATCATCACCCTGAGCTGAACTTGGTGCTCAGACCCTCCTAATCCCTGGGTACCTTTCATCGCTCACTGCTGGAGACCCGCTGGAGTCTCTCTCCTGGTgccatgtttttcttattttccctGTCCATGATATACAGCTCTACTGATTGGCCCTGTGAAGTTATACTTTACCAGTTGGAGCCCAGTAGGTGTTAATTATTTACTTCATTATGAAATGTTCTTTCTGCATTGAGATCTGTGCTTCAGATACATTCAGAATACAGTTTTGAAAGGAATGTCACTTAAAATGGCTTAAACTAAAACATGTGTTCATCTCAGTTTATTGTGTTAatttctttagaaaaaaaatattttccctttttccttAAACAACTTTATTAGATATGATATAATTTACTGTGACAGTCAGCCTGGTTACAAATATAGTTTAATGAGTTCGTCACTGACAGCGGAGGGGGTGAGCACCCCCAGGTCCGTGAAGAGGAGGGTGatgagggaggggggggtgtaGTCAATCATGGGATGCTCTTCTGCGAGATTCTTGGTTGTTTTCAGGGTGTCTGCTTTGTActTAAATTTGTCAGGTACGTCTTGCTGATTCAAAGGGTAAAGCCTGACGAATTTGAAGCTCTCTGCCACCACATAGAAAGGCTTGTTGTGGGCTTTGGAACACACTGCCATTTGGTATGTGCCAATCTTATTGATGATTCCTCCACTCTCCACTACACCTTCAGCCCCCACTATCACCAAATCCACTTTCTCCATGATGTACCCTACTGCAGCATCCAGAACTACTGTCACTGGCACATTGAGTTTTCTTAAGGCGTCTGCCATATTTTTCCtagAGTCTGGCTGGGATTCAGTCACGTAAACGGTGAAGCGCTTCTTGTCCGCAGCCGCATTCTGCAGCACTCGCAGCACCACCCTCGAGGAGGAGTGAGTCAGGATTTTAGCTCCGTCCTTGATGAACGTGTGGCAGAGTTTTGCGACCTTGTTCCTCGACAGCGATATTTTTTCCAAGAACAGTTCTCCTCTTTCCACCATCACCTTCTTGCACTGTGCTGACCGGGTGCTCCAGCGAGGTGAGGCTGATGAAGCGCAGGAAAAGCTCTCCCCCGGAAGACACGGCCACGGAGGAATCCACGCTGATCAACCTGTCGATGGCTTGCGTCAGGTTCTCCCTCAGACCCTGGATGGATCACCATTACCTTTGTGTCTCTTGAGGAACTCCAGGAGGGTGCGGATGGCTGCCACAGCAGAGGCCATGTCTGGGTCTTGTCCCATCTGACTGCGGAAATACTCCACAAGCTCTTCTTCGTccatttctgaaataaagaaaaccttcGCAGCACTTCAATCCAGACAGATGTCAGTTTCCAGTTAGCCTTCTGTACCCACAGACAGCCAATACAGCtttatgattaataaaataacctagaaatgtctttaaaataaagctgcagaaaaaaatatatagttcagCTGATTTTATCAAATCGCCTTCAAAAATTGCATCAACTTTAAGAGCAAAAAATCATGACAGCCCGACACATTTATCCACCCATGGAATAGTGAGAATCAGACTTTtacaaataactttttattttagctaagttgatgttttaaaacgaattaatattaacatttggAGAGAATTATTCCATCGCTTTCAGTGTCGCTCGTGTTTCAGAAGCTGCTTGAATGTGTCCTGTCGCGGTAAAATTACGTCATCACACCGCGACAGACACAGGAAGATGCTTTGCTGACATTTGGAGAGAAAGTGTATTTGGTTCGTTTGTGTTGCAGACATGGCTTCGGAGGACGAGATCAGTCTTCTGGTGATCGTGGTAGACGTCAATCCCATATGGTGGGGCCAACAAGCACAGAGAGAGCCCCAGTTCACCCTGTCAAAGTGTATGGATGCAGTGATGGTGTTGGGCAACGCGCACATGGTTATGAACAGGAGCAACAAATTGGCCATCATTGCCAGCCACTGTCAGGAGAGTCATTACCTGTACCCCAATAAGCACTGGAAGGCTGGCGATTTTGCTGGGGATGACACAACGTCGGGCAGCGGGGATGGCAAATATGAACTTCTGTCTGTAGCTAATGATCTCATCGCTGAAGAGATCAGAAATCTCATGGCAAGAACTGAAGTGAGGGGCCAGCAGACAGACACTTTACTGGCAGGATCACTCGCGAAAGCACTCTGCTATATCCACAGAGTGTCAAAGGAGTTGGAAGctgGACAGGAAATGAAATCCAGGATATTGGTCATAAAATCTTCTGAAGATTGTGCTTTACAGTACATGAATTTCATGAACGTTATTTTCGCTGCACAGAAGCAGAGCATACTGATAGATGCTTGTGTGTTAGACTCAGACTCTGGGCTTCTGCAACAGgcATGTGACATAACAGGAGGGCTGTATCTGAAAATCCCACAGAAGATTGCTTTGGCACAGTATTTGATGTGGGTGTTCCTGCCAGACTGTGATCAGCGCTCCCAGCTGGTCCTGCCTCCCTCGGTACACGTGGACTACAGAGCGGCCTGCTTCTGCCACCGCAATCTCATAGAGATCGGATATGTCTGCTCTGTCTGCCTTTCGATATTCTGCAGTTTCAGTCCTATCTGCACAACCTGCGAGACTGCCTTCAAGATTTCATTGCCACAAATGatgaaaccaaaaaagaaaaagttaaagcTAGCTACGTGACCGCCACCTTTGGACTGTTAAGTGATACTGGGAATCGGCGTCAGGAGAATCTAACGGACAGCACCAGAGTGTGGACTAGCTGGCAGTTATATTTCAATTTGAGTGAAGAATCggttgtgctttttaaaaaaaacatttttctacaGTTTTGTTTCCGATTTGCAAAGGACCTGGCTGGAGAAAGTTAGACTATATTCTGATTGAAGAGGTGCATCACCACCTGCGTCTTCCCATTGCTTCTGGTTTACACCTCAGCAGAAACACCATCAGGAGACCCAACCTGTCAGGGAGTTGTTGAAGTTTAAACTTCGGACGGAGACTGAAAGTACAGTTGGGAACTATAAGGAATATTTTAATGGCCCCATGTGCAACTTAGTAAAAAATCGAATGAAAAATTATAAGTAactatgattttgttttagtacTTTTGTATTGAAACAACAAAGTCCTACAAATCTTTAGGTTTTACTTATCAAAAGaccaaaatgttcatttttcttGAATAATTGTTGTCCTTAGTCAGTGATTTTCTTAACTTTTCTTAATGCTAGATAAAATAACTGCTTCGTTTGTGAATGTGATATGATTCCACATGttccatgtgtttttctttccacaatGCAAAAAGTATACTGTGAAATCTGCTTCCAAACCAAAATAGTAGCATGAATCAGATTTTATTAATGAGAAGGGAAATTCAGAAGAGCAGTTATTAGACAATTCAATAATCTTGAACAGGTGTTTGGAATTAATAGATTAACGGTTGAGTTTTATCATGAATTTCAGTGTCTGCTGATAACTgaaattgacaaattaaaaagtgtatttatttctaaattttCCCTGTTATTACTATATTAATTTTAGTAGAGACAGAACTATTTTCTGTTGAAATCAACCATGtttatatcagaaatgacaacaataaaatgtgtttctttgaaaatgta
>TU148752
ATCTCAGTTTATTGTGTTAatttctttagaaaaaaaatattttccctttttccttAAACAACTTTATTAGATATGATATAATTTACTGTGACAGTCAGCCTGGTTACAAATATAGTTTAATGAGTTCGTCACTGACAGCGGAGGGGGTGAGCACCCCCAGGTCCGTGAAGAGGAGGGTGatgagggaggggggggtgtaGTCAATCATGGGATGCTCTTCTGCGAGATTCTTGGTTGTTTTCAGGGTGTCTGCTTTGTACTTAAATTTGTCAGGTACGTCTTGCTGATTCAAAGGGTAAAGCCTGACGAATTTGAAGCTCTCTGCCACCACATAGAAAGGCTTGTTGTGGGCTTTGGAACACACTGCCATTTGGTATGTGCCAATCTTATTGATGATTCCTCCACTCTCCACTACACCTTCAGCCCCCACTATCACCAAATCCACTTTCTCCATGATGTACCtgcagcaaataaaaacaagtaggTTGTCCTTCATCTAATCACTCACACAGAGCCCCTTGTTAACTTCATTCTCATTTGAAAATGACTGCATCTAGTATAAAGAAAGGGCACTGGGCTCTATGCTGGCTTTCATTCCAATCCAGCTCCcagtaacacaaataaaactcaTGGCTTAATTATGCAACATGAACATGACCTTTTACCATTAACTGAAGAAACTGAAGTCTATGTAACGTGATGGGGCAGGGATGGAGAGACACGTACCCTACTGCAGCATCCAGAACTACTGTCACTGGCACATTGAGTTTTCTTAAGGCGTCTGCCATATTTTTCC

Function

symbol description
ddx55 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be active in nucleolus. Orthologous to human DDX55 (DEAD-box helicase 55).
gtf2h3 Predicted to enable metal ion binding activity. Predicted to be involved in nucleotide-excision repair and phosphorylation of RNA polymerase II C-terminal domain. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Orthologous to human GTF2H3 (general transcription factor IIH subunit 3).
eif2b1 Predicted to contribute to guanyl-nucleotide exchange factor activity and translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be part of eukaryotic translation initiation factor 2B complex. Human ortholog(s) of this gene implicated in leukoencephalopathy with vanishing white matter. Orthologous to human EIF2B1 (eukaryotic translation initiation factor 2B subunit alpha).

NR:

description
Ddx55 protein, partial

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018800 True 5845 mRNA 0.46 33 20679280 20695194
TU148752 False 796 lncRNA 0.42 3 20684865 20687644

Neighbor

gene id symbol gene type direction distance location
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding upstream 459 20670836 ~ 20678821 (+)
AMCG00018791 snrnp35,LOC102792111 coding upstream 34039 20642329 ~ 20645241 (+)
AMCG00018793 kmt5a coding upstream 41576 20631003 ~ 20637704 (+)
AMCG00018782 arl6ip4 coding upstream 194351 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 215931 20457965 ~ 20463349 (+)
AMCG00018804 NA coding downstream 488 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 3028 20698222 ~ 20705953 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding downstream 11303 20706497 ~ 20723114 (+)
AMCG00018806 rflna,LOC106585519 coding downstream 201720 20896914 ~ 20912077 (+)
AMCG00018823 NA coding downstream 996117 21691311 ~ 21692108 (+)
G118644 NA non-coding upstream 58733 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 73183 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 78924 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 81162 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 81673 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 227174 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 675716 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 986126 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1852078 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1863019 22558213 ~ 22558419 (+)
AMCG00018792 LOC106928543 other upstream 75965 20601956 ~ 20603315 (+)
G118636 NA other upstream 85141 20593366 ~ 20594139 (+)
G118635 NA other upstream 86264 20592736 ~ 20593016 (+)
G118623 NA other upstream 164789 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 304468 20372219 ~ 20374812 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 28416 20723610 ~ 20772586 (+)
G118815 NA other downstream 492762 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1153176 21848370 ~ 21897700 (+)
G119507 NA other downstream 4538888 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 4770897 25466091 ~ 25485446 (+)

Expression


Co-expression Network