AMCG00018803


Basic Information

Item Value
gene id AMCG00018803
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20698222 ~ 20705953 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018803
ATGGCGTCGAGCAGAGCATGACAGTTTGCGCAGGAGCGTCTGTATATCGCGACATTCACCTTCATCATCATGACTCTGCGGCTAAGTCATACTGTTCTGCTACTTGTGTGTCTTTCTTTGCATGTCTTTGTCAAAGATGGCTGTGCAAGTGTTGCCGGCCTTCATCCTTGCCTCTGGACCCAGTGTGACTGCCTACTTACTGGGCAACACGACTGGTATCACCGTGAGCCTGAGCGCTGTGACACAATCCAACACAACTGGCACGATTTCTTCCCCTTCCTGTACAGCCAGTAATACTAGCCAGTGGCAGCTTATACAAGAGACTGTTGGAAAGaatgcattgaAAGTGACGCTGCACTTGAATCGAAGCCTGCTGCTGTGTGGCAGCACTGATCAGACAGATTGCTGTGCAGCGGCGGTGCTACTGCCGTGCGTGGTGGAAGCCCTCCAGGTGTCAGCCTGCCTGGACAACAATTCTCAGGCCACCTTACTGGTGCAGGCTGAGATCTATGCCCAGATCCCCTCCAATGGAACTGTGTCTGAGGTGAAAACTGTGATTCCCAACCAGGCCTACCAGCCTCTTGGCCCATGCCCCTGTAACCTAACAGCTGGGGCCTGTGATATCCGCTGCTGCTGTGACCAGGAGTGTACACCGGAATTGGTGCGGCTGTTTGAGTCCCAGTGCTTCAGTGGGGTGTTTGGGGGGAATGTCTCGCCTCCCTTCGACCAGCAGTGCTCCGTTCAGGCAGCCAACAACGCTCCTGACTGGTTTCCATTTCTGTGTGTGCAATCGCCTGCTGCCAACAGCCCCTTCCTGGGGCTCTTCTACCAGGGAGCCACGGTCAATCCCAAGACCAGTCCTTCCTTCGAGACTCCATCTTTATCTGTGCCATTACCTCCTAATGGTTACAAACAAGGGGATCCCATTTTCATAGTGGGTAATCGGTATTTCACAATCCCACAGCAATCCCTGGTGGGTCAGTGCATACAGAAAGCTCCCGTGGCCtacctgcaggatttccagtcCAGCTGTGCAGTTCCTCTGACTAACTGTGGGAGCAGCCCAAGCCTGTGCATAAGTGCTTCTGATTTAAGTGTCAACATTCACAATGGATTTGACAGTAGCATTACCATCAGTGTGAGGGAGGAGATCTCCAGCGACCCGAGTGCTTTTGTTTCTAACCCTAAGGAAGTTCAAACACTTAGCTCTACACAGACTTCTCTGTTCCCAGGAGGCGAACCCAGTTCAAATTCAGGGAACCTTTTTGCAGGACAAAGCAGCATATGTGAAAATGTGACTTTATCCCTCAAGTACACTTTTCACTGGAACGGGAACAACCTCACAAACGTCTCAGTGACCCAGACCATTGGACGGGTGTGCTGGGACGCAGGCGCCACATTGACCCAGAGGTTTGCAGCAGTTTTTATTAATGGAAATGGAGCAGCACTGGCAAACTCAGGCAATCCAGGTTATCAGATCGGAAAACCCGTTATTGCTGGAAATGGACTCATGGAGATAAACAGGACATTCATAAATTTGTGGCAGCCAgTTGGGAATGGTCTTTGTGCTTCAGCCAAAACAACCCCAGTTTTGTTTGGGGAGGATTCATCCACAGGCTGCTTCTTACGACTTAATCTCCAGGATCTGTCGAACTGCAGTCAGCTCAGAGAAATGGTTCACAGTGGCTTGGCTGCTCTCGTGAATGCAACTTTAGTAGCAAAAAAAGGCAACTCCAAAGTGTTGAACCAGACAGATTGGGTGCATACAAAGTATGTGCCACCAAATATTACCAGCACCATAGAAGGTCAGCCTGGGACCTGTGCTGATGTCCCTTCTCATCTGAACATCCGGATAAACACCTCTGTGGTAGGGGTCGTGGGAGGGGTGCCTCAGCAGGAAATACAGGCTGTGGAAGTGACTTTTGGTGTGGTCACATGGCAGATCCAGTGTGGAGGGGGTGACCCGGCTGCTTGTGTGAACAGCACTGTGGTTCAGTCATTTCCCGTCAGTGCCTCAGTGACCTTCGTTGCTATCCCTGCCCAGCCCCTGACTCCAAAAACCAGGTTTCAGATCAATTACACAGAATACGACTGCGATAGGAACGATGTCTGCTGGCCCCAGCTGGCATTCCCACTGACTAGATACTACACAGGTGAGCCCTACTCCCAGTCTCTTGCGAAAGGAATGATCCTGATATTTTTCTTCATAGTGGCATCTGTGCTTGGAACTCCGTGGAATCAAATCCGACAAGCATggaataacttgttttaaagtCCACTTAACTGCAATAAAACTGTGGTATtc

Function

GO: NA

KEGG:

id description
K19361 TCTN2; tectonic-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018803 True 2305 mRNA 0.51 18 20698222 20705953

Neighbor

gene id symbol gene type direction distance location
AMCG00018804 NA coding upstream 330 20695682 ~ 20697892 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding upstream 19401 20670836 ~ 20678821 (+)
AMCG00018791 snrnp35,LOC102792111 coding upstream 52981 20642329 ~ 20645241 (+)
AMCG00018793 kmt5a coding upstream 60518 20631003 ~ 20637704 (+)
AMCG00018782 arl6ip4 coding upstream 213293 20477126 ~ 20484929 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding downstream 544 20706497 ~ 20723114 (+)
AMCG00018806 rflna,LOC106585519 coding downstream 190961 20896914 ~ 20912077 (+)
AMCG00018823 NA coding downstream 985358 21691311 ~ 21692108 (+)
AMCG00018821 NA coding downstream 1009897 21715850 ~ 21743739 (+)
AMCG00018826 NA coding downstream 1324247 22030200 ~ 22036605 (+)
G118644 NA non-coding upstream 77675 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 92125 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 97866 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 100104 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 100615 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 216415 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 664957 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 975367 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1841319 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1852260 22558213 ~ 22558419 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 3028 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 94907 20601956 ~ 20603315 (+)
G118636 NA other upstream 104083 20593366 ~ 20594139 (+)
G118635 NA other upstream 105206 20592736 ~ 20593016 (+)
G118623 NA other upstream 183731 20514160 ~ 20514491 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 17657 20723610 ~ 20772586 (+)
G118815 NA other downstream 482003 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1142417 21848370 ~ 21897700 (+)
G119507 NA other downstream 4528129 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 4760138 25466091 ~ 25485446 (+)

Expression


Co-expression Network