AMCG00018806 (rflna,LOC106585519)


Basic Information

Item Value
gene id AMCG00018806
gene name rflna,LOC106585519
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20896914 ~ 20912077 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018806
CTGCAACAGGCTGAAACTACCTTGTGCTACTTTCATTTCTTTTCTAAGCAAAAGGTGTTTCCCCCCGTCTTTCCAGTATGCAGTGAAGTGTAGCTCCAGTGCATGCCGATGGACAATCATTTCTACGTGGGCTCCTCGCATAAATGAACTGGCCCTCGCATGATCTGAGAAGCGCTGACAGACTGGTCCCGCCGCCGGACAAGCGTGAAGCGCAAGGTCTCCTCCTGATAAACAGAAGAGTTTCCCGGATTTGCCTTTCATTGGGTTTGGATTTCCTGACGCTTATTTTCTTAACAATATACGTCGTACCAAGACTGACCGGAGTGAGTTCCCCTCAGTCTCGTATTGAAATGGTGGGGCATCTGCACTTGCAAGCGATGGATGACAGTCTGAAAGGAAAGAACCGGGAGGGGTTGCTGGACAGTCCTGACTCCGGGCTGCCGCCGAGCCCGAGTCCGCCTTTCTACTCGCTCTCCCCGGCGATGATAGAGAGCCGAGCCGGTGGCAGCAGCACGCCCATCGAGCACCATGGATACAACTATAGAAAGGAGAGCAAAGAAGGCAAATTGCTGCCATACCTCCTGCTGAACTCCACCGGGACGGAGATGAAGTCTAGGATGTACCCGGTAATTTTTGGAGAGAGCATTGAAGTCAGCCCAAAGCCAGAGCGAGAGATCAGGTGCAACTCCGAGGTGAAGTACGACTCGGACAAGCACTACAGAGACAACGTCTACTGCGCCCCCATTCCTACCGTCACCTCCTACAGCGAGACGGTCATAGCGGCCCCTAACTGCACGTGGCGGAACTACAAGTCTGAGCTGCACTTCGAGCCTCGGCAGAAACCGCTGCGGTTCCAGAGCACCACCATCATCTTCCCCAAGCACGCCAAGAACATTTACAGAACCACCCTCAACTACAACAGCGCCAGCGCCAAGAGGTGGTTCGTCTCCAGTGTACAGCTGGAGTCCAGCGAGGACGCCAGCCCCTGCATAATCTACACTGAGGACCTCTAACTCACCCTCATCTCCACCTGCTTGTATGGGCTGTCAACGCACTTCTGTGAGTGAGAAGAACAGTGACAGAGAGTAAGAGTGACACATGTGACATGCTGGGCTATCAGTGAATAGGTACTTGAAATTTCAGTGGCAGGACATGAAAGGTTGGAATGATTGCCTTGCGTGTCCCCGTGTCCATacaccacactcacacaaatgTGTGCTGCCACAAAGCAggaatctgattttattttgctttttttttaaattaagttattgCTATAGTCCAGATGGTATAGGGAAACACTTCTTTATTGaatcttgtgttttgttgtttcttgcaGTTCTCTTCAGCATAAATCCATGTCTCTCTCTGCGCCTCTTGTAGCTTTTATCTTGAGCAGAGAGACCGACACCTCCCCTTCATTCCTTAGTCACTTCTGTTTTGAGGATCAGCGACCTAGATCGGCATCACTTACAGTAACTTATTAAGAAACTACTCTCGGTCTGATCTGAGCACCCCTCCGCATTTCACCAGGGTGCCgaatcaaaccagaggagttaGAGAGATAAACACTATAGGGGGAATTATGTAAAAGTGACCTAGTTTTGAAGACTCTATTAAAGTGATGTAGTTACTGCAGCCAAACAGCAGCCAAATATTCAAACTCTTGGGAATCAAGCAACTCTAATAAGATCAGCTGCTATGTCTGTTTTATCATCATCCTTCTTCTTctgaatgtgttaaaaatgggcaatggaaaactacattttattctCACGAAAAGTACCATAACACAACAGCTAGATTCCATCGTGCAGTCTTGAATATCTCGTAATTAAATAAGGATCGTATTAGTTTATAGGTTTTACTTTACAATTACCGTATCCCTTTAACCACTGCTGACCGCCAGCAGAGTATTTTTCAAGTGTCAGGACTAATATTTTAGATGATTTTCTGATCTGTTTAAGGAATGATGCTCAGTTAAATTGTAGATCACCCTGACATATCATATTGCCTGTAAAAGTTTATATGCAGCATAAATCATGTATTGGTGGAATGCAGTTACAATGATTCATATTCCTGGGGAACTGTGTGCTGGAAGTGATTATTGCCATAGGAGAATACTGTATAGCTGTAAAACACAGATTGATGCAAAGTGATTGCATTGGTTTATATTGAATTTTCCATCTTATATATGGAGAGAATATatgtattgagagagagagaggtgtccATAAGTTGGACCAAAGATTTCATAACAAAATCCAATgattgcaattttttttcctATATACTGGTTTCAATTTGTATAGTAAATGTCAGGCTTTATCAGATTCACAAAGCCTTCTTGCTTCTGTCTGGACTCTTCGTAattttttaattcatcattGTTGGACGTGGCCATTGTCGTCTTTCATAGAACCAGCTTTTATCCATGCAGATTTGCCCAAGTTTTTCTTCCTTGTGCAATGACAGCAATACGAAGGCCaactatgcatttcattttgtaaagaaGTATGATCAGTTAAAGCATTGACAATGTTATGGTTCTcactaaaaagaaagaaatatagatAGACATGGTAGCATTTGCGTGTTGCATCGATTGTCAAGCAGATGGTTTTTAAATacctatttgtttgtttttaaaacatgacaaaatatatatatctaataaAGGTTTAGTGTAGCAATTTAAAGAATATACAGATATCCCCGTCTCTTCCAATAAACACCAGCATTCTGCTCCCCAGACCTGGCCTGTATGTTTCAGTGGCTTAGGCTTAATACTACCGTTTCAGCTAAAAACAACAATCTGGTGGCCGCAGGTCTGGGGTTTGCCATTTTTAGGctcatacatttcaataaaagcattttaaagaatCGTTTAAATATGCtggtaaaatgtatatacactgaAATTAGCCATTACATAAATCTTACGATaataaggtgtgtgtgtgtctctctcatactatatatattttggccAGTGTGGAGTCCCCTCATTGATTTACATGCGTTTGGCTCAGTGCAGTTTGGCTTGGATGCGCTAGTCCCGTATATTTACTGGAAAGCCCGTTTTCCATACCTATTCAGACAGACTCCCTTCAAGACTAAACTAGGCCTTGCCTGGCAGGAAGTATTGCCAGTGTGGAATCCTCCGTGCATGTCTGGTACACAGGCTGCCGTCTGCGGCGTTCAGAGCAGCATTCACAGGTTTAGTGGAGGGGCAGAAAGTGAGGTGGAGTGAAAAGTCCCCCAGCTGGCCCTTTTCAGGCAGTGATTTACAAGCATGATACTCCGGCCTGGCACAGGAAGCAGGACATGAGGCAGGAAGTACAATCAATCATAAATCTGCTTTTTACAGCTTGTCCGTGGTGTTTATAAATACTgctgaagcattttaaacaaaagccCTTATAAAAACAGTGCAGCAGCTCGTATACCTACCTGAATCTCATCAACCAGCAATACAGCTgcgtgtttattttgaaatggttgTTATTTAAAGAGACACTTCCCTTGCCAATTCTAGTTTGCTCATTATAAATAGCGTCAGCTGACCTGCCAGTTATTTCTAATCCACAGAAAGTTACCCGTGACCTAGTGaaatatcacacacaaaaaggttTACCTCAAGGATAAGGAAGTCTGGAATTACATAGTAATAAATGCAAACATTGAAGGAGGGAGATTTGGATCAGAAATctgcactaaaaaaaaaaaaaaatcagatgcTGTTTTCCATCAGTTATAACTTCTCATCCGTCTATCATTGTTGTTTGCTGTGCAAACTGTTCAGTCTTTTACATAAAGCAAGCCCTCCTAAGTAGAAGACTTGTACTTGAAAGGTGACCAAATCTATGTGTGAAAGATAAGAACAAGGTtgcttttgtatatatatatcactgcTAATgacaattgattttaaaaacttttttcaataatattctttagtatatatatttttttactttttacaaaaATGAGGAACGTATTAACCATTTCCCACCCAGACAGTAGTACAGCAAAGGGGGACATATACTATAAACAGTGAATTTAAACCATAGTAAAGTGGGTCTAATATGTGTAACAGGTCTCCTTTATGTAGGTGAGCCAGGACTAAGATACAGCACCTACTGTAAGATATTTTAATGGTTGTTTATTTAAGGAACAGAAAGGCTTTTTTTTACAGCTGGGGTGGGTGCAGTTAGGGATATTCCCCAGAGCAGTGGCTTAAACTTTCAGTCTACTGACAGGGGGAAACAGTCCATTGCTTTTAACAAGCCTTCCCTTTCTGCTGGAGCTTGTGctactgaaacatttaatacGGCATGGTGAGGACGTGTGGAGCACACATCCACAGAATCGTGATTTGTTTAGCAGTAACCTTCGCAAAAAATGACTGGTGCCAATGTTATCCAAGTTGAACTGCTGCCAGGTGTCCGATTTCATGGACAGCTAAGGTATTCTTGATTTACAAGTACATTAGTaaatttctatatatttttttacaaccagaaaaccaaaacaaatgccACGGCCAAGTGGGCTCCTCTTAAACTTCACTGAAGTCTAGCTTTATTGTGTGTGTCACTGAAAGGGTTTGATTAATGTCAGGCCTAATTATGATGAAATAACACTGTCATAGCTGGAGTAACATTGATGCCACTGTGGCATTGCAGCACAgcgaaaaaacaacaacaaataagaCCTGAATCTTAAAAACAGTGACTATGGAATTCTGGATTCAAATTCATTACCTCAGTTTGTTAACATGCTGTTTTTGCCCTACAGTAATGAATGCGTATTCCCTAGGATTTCCTAAAACTGCCTATATTCTGGTAAAGATGataattactgtaattttgAAGCATAAAgaactttgcttttttttccaaatgaaaacTGTTAAAGAGTAATCAAAATGTAGTCTGCTGTTAAGTTCAACAGtgaaacaaaaccttttttttaatgatttgtggactaaggagaaaaatgaaatgtgcttattaaatgcaattttacaaggATGACTGTAGAGCTGATACTGTTAAGTTGTTACAAGAAAGATTTAAAGGAAGGTAGTAGACTTTAAAGACAGAAGTAAAGTAGCTTATCTTAAAGCCATAATTATAGCCTTGACAGTGCCATGTTGTCTTTGCTCAGAAACCACCTTTCTTCCGATACATGTCAGGACAACCACTGCCAGTGCTGTCATTATGAGGCAGTCTGGGGCACTTCTTTATGAAAAAGGATGCATGGAATCAAGAGTAAACTGGTCACACCAGTCATTAAACCTGATTTATGGGTCATATTGTTACAGCCATAAGCAACAGGTTAGGGCAGTGTGGTTGCATTCTACTTCTCCGAGTTGTGCAAGTACTTTGCAGATTCCAAAGAGGTCATGCAGTGCAACTCTGTCAGCCCACTGGCGGGAGACTCTTTTCTTCAAAGCCATTCTGGAGATATTCCTGtaggcaaaataataattggggTGATCATGCCATACCCCATGAAGGAGATAACAGGGACTCGTCCATTGCAATATGTGGTCGTTTAGCAGCAACTACATGCTAATGATGTAGAAGGTggcataaaacaacaacaacaacaaaaaacacgaTTTTGACAATGACAGACAGTGGGCTCTGCATGTTCAAGTGTCTTTCTTGGATCACAATTTATACTTCTttcaaaaatgcttttcaacCTGACGGACCcattacacaaaacaatacCTTGACCTTTTTGCTACCAATGGCTGGAGTGGTTGATGAAGGTATGAGCAGAGTTGAAgatggagagagcgagagagagagagaaatgttctAAGACTCTTGAGGTGTaatgttttacttaatttttatccttgttattattttcctaaCGTCTTGACAATTTATGTGCttgtaaa

Function

symbol description
rflna Predicted to enable filamin binding activity. Predicted to be involved in several processes, including actin filament bundle organization; negative regulation of bone mineralization involved in bone maturation; and negative regulation of chondrocyte development. Predicted to act upstream of or within regulation of chondrocyte development. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in actin filament bundle. Orthologous to human RFLNA (refilin A).

NR:

description
PREDICTED: filamin-interacting protein FAM101A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018806 True 5920 mRNA 0.41 4 20896914 20912077

Neighbor

gene id symbol gene type direction distance location
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding upstream 173800 20706497 ~ 20723114 (+)
AMCG00018803 NA coding upstream 190961 20698222 ~ 20705953 (+)
AMCG00018804 NA coding upstream 199022 20695682 ~ 20697892 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding upstream 218093 20670836 ~ 20678821 (+)
AMCG00018791 snrnp35,LOC102792111 coding upstream 251673 20642329 ~ 20645241 (+)
AMCG00018823 NA coding downstream 779234 21691311 ~ 21692108 (+)
AMCG00018821 NA coding downstream 803773 21715850 ~ 21743739 (+)
AMCG00018826 NA coding downstream 1118123 22030200 ~ 22036605 (+)
AMCG00018825 NA coding downstream 1135225 22047302 ~ 22074621 (+)
AMCG00018828 NA coding downstream 1178626 22090703 ~ 22091323 (+)
G118644 NA non-coding upstream 276367 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 290817 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 296558 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 298796 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 299307 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 10291 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 458833 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 769243 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1635195 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1646136 22558213 ~ 22558419 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 124328 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 201720 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 293599 20601956 ~ 20603315 (+)
G118636 NA other upstream 302775 20593366 ~ 20594139 (+)
G118635 NA other upstream 303898 20592736 ~ 20593016 (+)
G118815 NA other downstream 275879 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 936293 21848370 ~ 21897700 (+)
G119507 NA other downstream 4322005 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 4554014 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 4766600 25678677 ~ 25718426 (+)

Expression


Co-expression Network