AMCG00018808


Basic Information

Item Value
gene id AMCG00018808
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20776919 ~ 20805326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018808
ATGAGCACGATTAGCAAGAGAGTGCAGGAGGCCAGATCTGTGCCTAACTGTGTCCCAGAGACCACTCAGGGAGATGAGATCTGGCACAGCCTCGTCCtgctggagagagagcagcGCCGCCGCCACAGTGAACATGACCCAGCGGCTCTGAGGACAGACGGGACCCTCGCCATCCGACAGCTACACCTTCCTCAGCCACAGGCTTGCAGTGCAGTGATCATGTCTTCTGTCAGTCTGGAGAACCAGCTGCAGAGCGCGCAGAAGAACCTGCTGTTCCTGCAGCAGGACCACGCCCACACGCTGAAGGGGCTCCACACCGAGATCCGCCGGCTGCAGCAGCACTGCACAGATCTGACATACGAGCTGACGGTCAGAAGTTCAGGTTCATCCGACAGCAGTGAACTGAGGTGCAGTGAGCTGAGGACCAAATGTGAGGAACTGGAAGCCCAGCTGAAAGCCAAAGAGGAGGAGAACACGGAGCTCCTGAAGGACCTGGAGCAGAAGAACGCCATGATCTCTGTGCTGGAGAACACCAtcaaggagagggagaagaaataCCTGGAGGAGCTGAAAACGAAAAGCCATAAGCTGAGCATGCTGTCGAGCGAGCTGGAGCAGCGCGCCAGCACCATCGCCTACCTGACCTCCCAGCTGCACGCCACCAAGAAGAAGCTCATCGCCACCTCCAGCGGCACCTCGGACACCAGCCCCAATGACAGTCCGGTCCGCTCCTACAAGCCGGCACCACCCAAGGACAAGATGCCCGACACCCCGCGGCGCAGGATGAAGAAGAGCCTGTCCCAGCCCCTGAACTCAGAGTTTTCCGAGATGTACCGGCTGGGCTCGGACGGGCGCAGGCTGGTGCTGCGCGACACCATGGACGCCATGCCGGACCCCACGCCCTTCCTGCTGGCCCGGGAGTCCATGGAGGCGCAGGTCCTGAAGGAGAGGCCTGCAGTGATTCCGCCCATCGCCTCGGAGCGCACCTCCGCCAGCCCCCACCACAGCCCGGCGCGGGACAggcagcacaaaacacacatcgGCGTGGCCCACCGCATCCACCACGCCACCCCACCGCCCACCCAGCGCGAGGTGGAGACGCTGGCAGTGGACCAGGTGAACGGCGGGAAAGTGGTGAGGAAGCGGTCGGGGGCGgacaggacagtgtagagagcagaagacaccGTAACGAAGACAAAGCAATCATCTCAAATCAGCTGCTTTTTATGCAAAACCCTGTGATGAAAATAACTTTGTTCACATTCCTCCTTAAAGACTCTTTTATTCTGTTCCTTTGTAGAAACACCAACAAAGCATGCCAAATTTTTTGTTTGAAAGCCTTTGTGACTTAAACATCCTGCCTCTCCAACTACAGCTTCAGAAGTTGCTGTCCAGCTCCTTCCTTTTCTACATTGTGCTAAAAACACAGCCAAATAACCCTGCGTCTATGTTGTTGCTTGCTTCAGTTATGCATTCTGTATCCATACATACTCAAATATAAAACGGTTAATGAAACCAGATGGcaccattttcatttcattaaaaatgtattatcagtAAATAAAGTCAAACAGGTACAAACCACAAGCTTTACGTAGAACTTGCAGCAACATGTAAAAAAGTGTTTACTTATTAAACAACTGCTTCCGGTGGTTTCCTTCTGCCTgtaattaaactgtatattgAGTACAGAAGGAGTCCAGTGAGTGGCCTGCTGTTAATGGTGGACGACAATGCCTTTCCCTGGGCAGCAGTGTATttaatgtgagtgtgtgaaagCAGCAGGAAGGGACTTGTATATTTTGAGACAGTCTGACTTGTAACATTATTAGGCagtttgtaattttctttttttattttgtaatctatTTACAGACTTTCtgttaacaaatacacaactgTAACTTGCA

Function

GO: NA

KEGG:

id description
K16452 CCDC92; coiled-coil domain-containing protein 92

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018808 True 1910 mRNA 0.52 5 20776919 20805326

Neighbor

gene id symbol gene type direction distance location
AMCG00018798 NA coding downstream 135043 20637710 ~ 20641876 (-)
AMCG00018796 sbno1 coding downstream 152233 20608895 ~ 20624686 (-)
AMCG00018795 mphosph9 coding downstream 175169 20587589 ~ 20601750 (-)
AMCG00018785 NA coding downstream 300390 20471539 ~ 20476529 (-)
AMCG00018787 NA coding downstream 310876 20458955 ~ 20466043 (-)
AMCG00018807 ncor2 coding upstream 117047 20922373 ~ 21012691 (-)
AMCG00018810 NA coding upstream 336729 21142055 ~ 21146883 (-)
AMCG00018809 NA coding upstream 343206 21148532 ~ 21175765 (-)
AMCG00018811 NA coding upstream 371506 21176832 ~ 21180489 (-)
AMCG00018813 NA coding upstream 381055 21186381 ~ 21190099 (-)
G118735 NA non-coding downstream 53138 20723580 ~ 20723781 (-)
G118726 NA non-coding downstream 80731 20695669 ~ 20696188 (-)
G118720 NA non-coding downstream 93565 20682954 ~ 20683354 (-)
G118719 NA non-coding downstream 94628 20682079 ~ 20682291 (-)
G118718 NA non-coding downstream 95135 20681543 ~ 20681784 (-)
G118808 NA non-coding upstream 303244 21108570 ~ 21108801 (-)
G118870 NA non-coding upstream 761683 21567009 ~ 21567253 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding upstream 789668 21594994 ~ 21616493 (-)
G118886 NA non-coding upstream 876007 21681333 ~ 21681557 (-)
G118889 NA non-coding upstream 889657 21694983 ~ 21702048 (-)
G118727 NA other downstream 79092 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 86997 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 98482 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 170176 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 253100 20488935 ~ 20523819 (-)
G118936 NA other upstream 1275138 22080464 ~ 22113695 (-)
G119144 NA other upstream 1999019 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 4270072 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 4329445 25134771 ~ 25171644 (-)
G119545 NA other upstream 4380881 25186207 ~ 25187408 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_04399676_04409215 CCDC92 coding CI01000053 null 4399676 ~ 4409215 (+)