AMCG00018811


Basic Information

Item Value
gene id AMCG00018811
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21176832 ~ 21180489 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018811
GCCGCTTCCGTGTTCTCGTCTGTCGCGATGGTTGGTCGCGCAGAAAGGTCAAGGGTCGCGGAGGATACTATCCACGTGGGTGTATGGGTCGGCGGCAGGACAGATAGCCGAGGATTGAAGCGCCGTGGACAGGGTGTGCCCAAGCATCTGAAGGAGATCCCAGCAGAGGCCAACGAGCCACTCAAGCGCCCATCAGAAGGCAAGCCTGACCTGGGAGAGATTGGCCATGTGGACAAAAAATTGAAATCGGACGCAGAAGAGCAGAAGAAGTTTCCCAAAAGAAAAGTGGTTCTTCTCATGGCTTATTCTGGCAAAGGGTATCATGGTATGCAGagAAATGTGGGCTCTTCGCAGTTCAAGACTATAGAAGACGAGTTAGTCAAATCTCTCGTCAAGTCGGGGTGCATTCCAGAGAACCACGGCACTGACATGAAGAAGATGTCATTCCAGAGATGTGCAAGGACTGATAAGGGTGTTTCTGCAGCAGGTCAGGTTGTTTCCCTCAAGCTGTGGCTGATTGATGACATTATGGAGAAAATCAATGGACAGCTACCTTCCCAAATCAGAGTATTAGGTCTCAAAAGAGTGACTGGCGGCTTTAATTCCAAGAACAAGTGTGACGCCAGGACATACTCCTACATGCTGCCAACCCTGGCCTTTGCGCACAAAGACCAGGAAAAACAGGACGACGGCTATCGGCTCAGCAAGGAGACGCTTGAGAGGGTGAACAAGTTGTTTACCTGCTATAAAGGGACCCACAATTTCCACAACTTTACCTCACAGAAGGCCGCCCGGGACCCCAGCGCTCGCCGTTACATCATGGAAATGTTCTGCGAGGAACCCTTCATCCGACAGGGCATGGAGTTTGCCATCATCAAAGTGAAAGGTCAGAGCTTCATGATGCACCAGATCAGGAAGATGATTGGCCTGGTGATCGCCGTAGTAAAGGGCTATGCGTCTGATGGCATCCTGGAGAGGAGCTGGGGCGAGGAGAAGGTGGACATTCCCAAAGCGCCTGGCCTGggcctggtcctggagaaagTCCACTTTGAAAAGTACAACAAGCGCTTCGGGAGCGACGGCCTCCATGAACCCCTCGACTGGGCGGACGAGGAGGAAAAGATCTTGGCTTTCAAAGAAGAGCACATCTACCCTACGATCATCCAGACGGAGCGCGAGGAGCAGTCCATGGTGAACTGGTTAGGCACGCTGCACATCCATGACTTTGAAGCCACTGCGTCGGGAGCTCAGAACAGCAAAGTGGGACCACAGgaCGATGAAGACGAAGGGAATGGCTCTGACTGACCAGCTTTTCAAACTGTCGAATCCTTTCACTGTGCTGCTGCTTGCCAGACTTCACCCTATACGAGGGAATTAACCAACCAAGTGGCAAAACTCCCATCCACTCCCAGGAAATCAactcttattttttcttccttgcaTATTTGTTAAAAAGACTTTCCTTTCCCTGGAGATTCAATGGACCACAAAAGCCTTAGCCTTCCAAATGGAGTCTATTCCCTTCAGTTAGGATGTTTTCTATTGCAAGGAATGATGAGACTTCAAAAATCGTAGGCAATCGTGGGTTTCCATGTggggaaagaaaaccaaaccctagctttaaaaataaaatgtttgttttaaaatgctgtttattcATTTCCATGGGTCAGGGATtgctatacttttttttttttcctcaggaTTTAATCTCAATATCTCTCTCAATGCAGACtcttatatatgtaaaaaaaaaaaaaaaaaaaggacttgcATATGGAATCCTCAGTGGTGCAGTTTTGTGAAGGATTTTCATGTTAAAAAGGGAAATGCTGAACATGCAATATGACAATGCAGATGTAAAACTTACTAATATCAATCAAAGcagaaaaatgaattccattAAGCACTGATGCATGATAGACAGACGTTTTAtgctgcagcaaaaaaaaaaaaaaaagccttggGGCTTCTCCTTCCCCAAATGGGGAAACTTTGATTATCTGCAAAATGAAACCGCTCTTAATTATAATATGagcctttttttttggtcacacATGAATTCGAATTCTGTTACTGCATAATAATACCTTGGCATATAcggctctggaaaaaattaagagaccacttaacattgat

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K06173 truA, PUS1; tRNA pseudouridine38-40 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018811 True 2139 mRNA 0.46 7 21176832 21180489

Neighbor

gene id symbol gene type direction distance location
AMCG00018809 NA coding downstream 1067 21148532 ~ 21175765 (-)
AMCG00018810 NA coding downstream 29949 21142055 ~ 21146883 (-)
AMCG00018807 ncor2 coding downstream 164141 20922373 ~ 21012691 (-)
AMCG00018808 NA coding downstream 371506 20776919 ~ 20805326 (-)
AMCG00018798 NA coding downstream 534956 20637710 ~ 20641876 (-)
AMCG00018813 NA coding upstream 5892 21186381 ~ 21190099 (-)
AMCG00018812 NA coding upstream 12458 21192947 ~ 21228267 (-)
AMCG00018816 mmp17,LOC106563158,LOC107661370 coding upstream 59418 21239907 ~ 21266410 (-)
AMCG00018815 sfswap,LOC104965082 coding upstream 221405 21401894 ~ 21422652 (-)
AMCG00018819 NA coding upstream 416980 21597469 ~ 21600672 (-)
G118808 NA non-coding downstream 68031 21108570 ~ 21108801 (-)
G118735 NA non-coding downstream 453051 20723580 ~ 20723781 (-)
G118726 NA non-coding downstream 480644 20695669 ~ 20696188 (-)
G118720 NA non-coding downstream 493478 20682954 ~ 20683354 (-)
G118719 NA non-coding downstream 494541 20682079 ~ 20682291 (-)
G118870 NA non-coding upstream 386520 21567009 ~ 21567253 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding upstream 414505 21594994 ~ 21616493 (-)
G118886 NA non-coding upstream 500844 21681333 ~ 21681557 (-)
G118889 NA non-coding upstream 514494 21694983 ~ 21702048 (-)
G118892 NA non-coding upstream 522813 21703302 ~ 21718803 (-)
G118727 NA other downstream 479005 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 486910 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 498395 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 570089 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 653013 20488935 ~ 20523819 (-)
G118936 NA other upstream 899975 22080464 ~ 22113695 (-)
G119144 NA other upstream 1623856 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 3894909 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3954282 25134771 ~ 25171644 (-)
G119545 NA other upstream 4005718 25186207 ~ 25187408 (-)

Expression


Co-expression Network