AMCG00018815 (sfswap,LOC104965082)


Basic Information

Item Value
gene id AMCG00018815
gene name sfswap,LOC104965082
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21401894 ~ 21422652 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018815
ATGTACCGCCGCGGAGCGAGTAAGAAGGAGCACAAGGCCTCGAAGGAGGAGAGCGACAGCAGTAAATATGCCGAGCTGCTGGTGTTCGGCTATGCCTGCAAGGTGTTCCGGGACGATGAGAGGGCTCACTTCCACGAACAGGGCACACATCTTATCCCATGGATGGGGGACAAGAACATCATGATTGATAGGTACGATGGGCGCGGTCATTTGCATGACCTGTCGGAGTACGATGCAGAGTCCTGGAATCGAGACTACAAGCTGTCCGAGGAGGAGGCCAGGATTGAGACTCTGTGTGACGAGGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGAGGAAGAGGCGAGGCAAGAGGAGGAGTACAAGCGTCTGAGTGAGGCCTTGGCTGATGAGGGCACCTATAACGCAGTGGGCTTTCGCTACAGTGCCGATTACTATGATCCCTCACAGCCAACAGAAGAGGAGGAATCGTCTAAAGAAATGGCTGAGCAAGAACCCCAGGAGAGCGAGGAGCCTTTTGTCGCTCCCCCCGGCCTCGCTGTGCCCCCCGATGTGGAACTGCCTGCAACAACGAAGATGCATGCCATCATCGAGCGCACAGCCAGCTTCGTCTGCAAGCAAGGGGCCCAGTTTGAGATCATGCTGAAAGCAAAGCAGTCGAGGAATTCCCAGTTCGATTTCTTGCGCTTTGATCATTACTTGAACCCTTACTACAAACACATCCTCAAGGCCATGAAGGAGGGCAGGTACACCAAAGTCTCAGAGGCCAAACCAGAGGACAAGGACAGTAAGTGGAGCTTCTTCATGATCTGTTCCGGGTCTGAAGATTCGGATGATGACGTGGATGGAGGGTATCTTCATCCCAGTCTGTGTGCTTTCAAAAAGAGTAACAGACTAGAAGAAATCATGAAGCCTTTACAAGTAATGGATCCAGATCACCCTCTGGCAGCATTGGTCCGTAAAGCCCAGCTAGACAACAGTGCTGCAGCCAAGAAGGCTGAAGAGAGCGCGCTGGCAGCAGGGGCCCTCCGTGCTGCAGCCACCGCGGCCCCCGCAGAATTCCCCAGCGACTCAACGGTCGCTGCAATGTATTATGGGTACTACATGCTGCCGGATGGGACCTACTGTTTCGCCCCTCCTCCCCCAGGGATAGACGCCAACGCCTACTACAACTCCTTACCCTCTGGGATTTTACCCACATCCTCTGGAGCCGctgcccccctgccccctggGACGACTCCCCCACCGCCTCCAGAATCTGCCAATAGCCCCAGCAGTCAAGCGTCTGCTCCAGCacccactactactactactactactactactacaagTTCCCAATCCCAAGCTCCTGTTGCCGCTATCATTCCTCCGCCCCCAGACATCCAGCCGGTCATCGACAAGCTTGCCGAGTATGTCGCCAGGAATGGAATCAAATTTGAGACCAGTGTCCGTGCCAAGAAGGATCCGAGGTTTGACTTCCTGCAGTCCTGGCACCAGTACAATCCGTACtatgaatttaaaaagcagTATTTTGCGCAGAAAGAAGGATGCAGTCTGGCTGAG

Function

symbol description
sfswap Predicted to enable RNA binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA processing. Orthologous to human SFSWAP (splicing factor SWAP).

NR:

description
PREDICTED: splicing factor, suppressor of white-apricot homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018815 True 1566 mRNA 0.54 10 21401894 21422652

Neighbor

gene id symbol gene type direction distance location
AMCG00018816 mmp17,LOC106563158,LOC107661370 coding downstream 135484 21239907 ~ 21266410 (-)
AMCG00018812 NA coding downstream 173627 21192947 ~ 21228267 (-)
AMCG00018813 NA coding downstream 211795 21186381 ~ 21190099 (-)
AMCG00018811 NA coding downstream 221405 21176832 ~ 21180489 (-)
AMCG00018809 NA coding downstream 226129 21148532 ~ 21175765 (-)
AMCG00018819 NA coding upstream 174817 21597469 ~ 21600672 (-)
AMCG00018814 adgrd1 coding upstream 189298 21611950 ~ 21623551 (-)
AMCG00018817 NA coding upstream 226182 21648834 ~ 21666684 (-)
AMCG00018818 LOC107665254 coding upstream 249622 21672274 ~ 21675196 (-)
AMCG00018822 NA coding upstream 475154 21897806 ~ 21909489 (-)
G118808 NA non-coding downstream 293093 21108570 ~ 21108801 (-)
G118735 NA non-coding downstream 678113 20723580 ~ 20723781 (-)
G118726 NA non-coding downstream 705706 20695669 ~ 20696188 (-)
G118720 NA non-coding downstream 718540 20682954 ~ 20683354 (-)
G118719 NA non-coding downstream 719603 20682079 ~ 20682291 (-)
G118870 NA non-coding upstream 144357 21567009 ~ 21567253 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding upstream 172342 21594994 ~ 21616493 (-)
G118886 NA non-coding upstream 258681 21681333 ~ 21681557 (-)
G118889 NA non-coding upstream 272331 21694983 ~ 21702048 (-)
G118892 NA non-coding upstream 280650 21703302 ~ 21718803 (-)
G118727 NA other downstream 704067 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 711972 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 723457 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 795151 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 878075 20488935 ~ 20523819 (-)
G118936 NA other upstream 657812 22080464 ~ 22113695 (-)
G119144 NA other upstream 1381693 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 3652746 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3712119 25134771 ~ 25171644 (-)
G119545 NA other upstream 3763555 25186207 ~ 25187408 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_10518326_10566504 SFSWAP coding CI01000006 null 10518326 ~ 10566504 (+)