AMCG00018816 (mmp17,LOC106563158,LOC107661370)


Basic Information

Item Value
gene id AMCG00018816
gene name mmp17,LOC106563158,LOC107661370
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21239907 ~ 21266410 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018816
ATGTTCTCTTCTTTCTTGATCCGTACTGTGATTGTGGAAAAGGATGACTGGCTGAGTAAATTCGGCTACCTCCCACCACCAGACCCAGTCACAGGGCAGCTGCAGACCAAGGAGGCTCTGACCAATGCCATCAAAGCAATGCAGAAGTTTGGAGGTCTGGAGGAGACAGGAGTTTTggACGAAGCCACACTGGGGCTGATGAAAACGCCGCGTTGCTCTCTGCCCGATGTCACTGAGTCAGAGACCAGCTCCGGGAGGCGGAGACGCGGCGCGCCCACCCAAACCAAGTGGAACAAGAGGCATCTGTCCTGGAGGGTCCGGACGTTCCCAAAAGAGTCCCACCTCCTGGGACATGATACGGTCCGCGCCCTGATGTACTACGCCCTGAAAGTGTGGAGCGACATCGCGCCGCTCAACTTCCACGAGGTGGCCGGCAACGAGGCGGACATTCAGATCGACTTCACCAAAGCCGACCACAACGACGGATACCCCTTTGATGGGCCGGGGGGTACCGTGGCCCATGCCTTCTTCCCTGGGGATCGCTACACTGCTGGGGACACACACTTCGACGACGACGAGTCATGGACCTTCCGCTCCCCAGACTCCCATGGGATGGACCTGTTTGCAGTGGCGGTCCATGAGTTCGGTCATGCTATTGGGCTGGCCCACACCTCCGCTGTGGAGTCCATCATGAGGCCGTACTATCAGGGCCCCGTCGGAGACCCGCTCAAGTACGACCTGCCGTACGAAGACAAAGTGCGCGTCTGGCAACTCTACGGTGTGAGAGACTCTGTGTCACATACAGTGCGTCCAGATGTGGACAGGACAGCTGACCCTCCTGTCCTACTGGACCTCCCCGAGAACAGATCTACTGTCCCGCCAGCTCGGGACGCCCCCGACAGGTGCAACACTCATTTCGACGCAGTGGCTCAGATTCGAGGAGAGGCGTTCTTCTTCAAAGGAAAGTATTTTTGGAGACTGACCCGAGAGAAGCACCTTGTCTCGCTGCGACCTGCACAGATCCATCGTTTCTGGAGGGGCCTGCCAATTAGTATGGACAGTGTGGATGCTGTCTACGAGAGACCGGGGGACCAcaagattgtatttttcaaagGGGAGAAGTACTGGGTGTTTAAGGACAACAACGTGGAGGAGGGATACCCTCGGCCCATCACTGACTTCGGGCTGCCTCTGGAGGGGGTGGACGCAGCGTTTGTCTGGGCACACAACGACAAGACGTACTTTTTCAAGGACAGCCGCTACTGGAGGTACGACGATCACCTGCGGAGGATGGATCTAGGGTACCCCAAGGACACCATGCTGTGGAAGGGAGTCCCACCATTTCTCGATGACGCCATGCGGTGGTCCGACGGCGCCTCGTACTTCTTCAAAGGGAAGGACTACTGGCGGGTGCTGGGCAGCGACATGGAGGTGGAGGCGGGCTACCCTCGCTCCATCGGCAAGGACTGGCTGGTGTGCACGGAGATGCAGTCGGACTCTCCAGCGCTGGAGAGCAACGGCACGGCCACCCGCTCACAGGGCCAGCACCACGTGAGCCACGCGGAGAACGGCTACGAGGTCTGCTCCTGCACCTCGGCCTCGCCGGCCCCTGTGGCCCCCTCTCGGACGCTCTCTGGAGCTCTCTGTTCACTCTGCCTCTGGACCCTCACAGCTGCCCTCTCTGCACCGCTATGA

Function

symbol description
mmp17 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within drinking behavior and kidney development. Predicted to be located in extracellular matrix; extracellular region; and plasma membrane. Predicted to be anchored component of membrane.

NR:

description
PREDICTED: matrix metalloproteinase-17-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07997 MMP17; matrix metalloproteinase-17 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018816 True 1695 mRNA 0.59 10 21239907 21266410

Neighbor

gene id symbol gene type direction distance location
AMCG00018812 NA coding downstream 11640 21192947 ~ 21228267 (-)
AMCG00018813 NA coding downstream 49808 21186381 ~ 21190099 (-)
AMCG00018811 NA coding downstream 59418 21176832 ~ 21180489 (-)
AMCG00018809 NA coding downstream 64142 21148532 ~ 21175765 (-)
AMCG00018810 NA coding downstream 93024 21142055 ~ 21146883 (-)
AMCG00018815 sfswap,LOC104965082 coding upstream 135484 21401894 ~ 21422652 (-)
AMCG00018819 NA coding upstream 331059 21597469 ~ 21600672 (-)
AMCG00018814 adgrd1 coding upstream 345540 21611950 ~ 21623551 (-)
AMCG00018817 NA coding upstream 382424 21648834 ~ 21666684 (-)
AMCG00018818 LOC107665254 coding upstream 405864 21672274 ~ 21675196 (-)
G118808 NA non-coding downstream 131106 21108570 ~ 21108801 (-)
G118735 NA non-coding downstream 516126 20723580 ~ 20723781 (-)
G118726 NA non-coding downstream 543719 20695669 ~ 20696188 (-)
G118720 NA non-coding downstream 556553 20682954 ~ 20683354 (-)
G118719 NA non-coding downstream 557616 20682079 ~ 20682291 (-)
G118870 NA non-coding upstream 300599 21567009 ~ 21567253 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding upstream 328584 21594994 ~ 21616493 (-)
G118886 NA non-coding upstream 414923 21681333 ~ 21681557 (-)
G118889 NA non-coding upstream 428573 21694983 ~ 21702048 (-)
G118892 NA non-coding upstream 436892 21703302 ~ 21718803 (-)
G118727 NA other downstream 542080 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 549985 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 561470 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 633164 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 716088 20488935 ~ 20523819 (-)
G118936 NA other upstream 814054 22080464 ~ 22113695 (-)
G119144 NA other upstream 1537935 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 3808988 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3868361 25134771 ~ 25171644 (-)
G119545 NA other upstream 3919797 25186207 ~ 25187408 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_10707037_10743311 MMP17, MMP17A coding CI01000006 null 10706944 ~ 10743594 (+)