AMCG00018820


Basic Information

Item Value
gene id AMCG00018820
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21848370 ~ 21897700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018820
ATGTATAcacatcttttatttatttatgtatgtatttattcattgcaGGTAAAGTCAGACTATGATCAGCTTAGAGAAACCCTTGGCATTGTGACTCAGGAAAGAGATTCGGCCCTGCAGGAGAAGAAACAGCTCCAAGGCAAACTGGAGAACCTTGAGCAGGTCCTAAAGCATATGCGAGAGGCTGCTGAGCGGCGGCAACAGCTGGAGTTGGAGCATGAGCAAGCCTTGGCTGTCCTCAATGCAAAGCAGCAGGAGATTGACCTTCTGCAGAAGgCTCAGGTTGAAGCTAAGAAGGAGCATGAGGGAGCAGTACAGTTGCTAGAGGCCAAGGTTCGAGAGCTGGAGGAGAAATGCCGGACACAGAGTGAACAGTTCAATCTTCTGTCAAAGGAGCTTGAGAAATTTCGCCTGCAGGCTGGGAAGTTTGATTTATTCAGCGCCAATCCTTTAGCGGTGTGTGATACCCCTGGATCTCCTAGCAAATCTCTTGCCCAGCTCCTCAATGGACTAGCCACCCCCATTGGGAAAGGTAATGAAAGTCCTGCAAACAGATCCGTAATATCTGAATTTATTCGACCAATCCAGATAACTGGAGACAAACCTGAACTCCTGTCTGTCAAGCCAACATTCCTCACCAGGACTCGGCCTAGCAGCCCCCGGCGTACATATTTGGCAGAGatGGATAATGAATTAAGTTCAACTACTTCCAAAGTGAGGTATACAGGAAAGGTCCGCCTCTGTATTGCTCGATACAGCTACAACCCTTATGATGGACCCAATGAGAACCCCGAGGCTGAACTCCCCCTTGTGGCCGGGAAGTATCTCTATGTCTATGGAACTATGGATGAAGATGGGTTCTATGAAGGAGAGCTGTTGGATGGGCAGAGAGGCCTTGTCCCCTCCAACTTTGTGGACTTTGTCCAGGATGAGGAAATGCCTTCGATCCACACTGTGGACAGCAGTAAGGACCAAGGTTACCTCAACCACACAGGCCTGGGCCTCCAGGGTGGCAGTGGCATCATCACTGATTCCAAATATGATGGCAACATGGCTGGTGATGTCATCAACTCTTGCAACAACGGAACAGGGACCCTGGATGTCAGCATTGACGAGATTGGAGAAGATATTGTGCCTTACCCCAGGAAAATCAACCTGATCAAGCAGTTAGCAAAGAGTGTGATCGTGGGCTGGGAGCCGCCTGTAGTGCCTCCGGGATGGGGCTCCATCAATGGTTACAATGTCTTAGTGGACAAGGAGGTGCGCATGAGCGTACCTTTCGGTGGCAGGACAAAATCTCTCATAGAGAAGCTGAACTTGGCCACCTGCACATATCGGATATCCATCCAGAGCATCACTGAGAGGGGGCTCTCCGATGACCTGCGCTGCACTCTGCTGGTGGGAAAGGATGTGGTGGTCGCACCTTTTCACCTCAGGGTGGACAACATCACGCAGATCTCTGCCGAGCTCTCCTGGTTGCCAAGCAACAGCAACTACAGCCACATGATTTTCCTCAACGATGTGGAATATGATGTGGTCAAGGCTGCTAGCTACAAGTACCAGTTTTTTAACCTAAAGCCCAATATGGTTTACAAGGTCAAGGCTGTGGCTCAGCCCCACCAGAtgccttggcagcttcccctggAGCAGCGTGAGAGGAGGGAGGTCACCGTGGAGTTCTGCACACAGCCAGCAGGGCCCCCTTTTCCCCCCCAGGAGGTTCTGGTCCAGTGTGGAACAGCTCCAGGAGTCATCCAAGTGAGATGGAAACCTCCTGCTCTGACCGCCACAGGAACATCCAACGGAGCCAATGTGGTCGGCTACGCTGTGTGCACAAAAGGACAGAAGATCGCAGAAGTCCTGTACCCCACAGCAGACTATGTCACGGTGGAGCTGAACAGACTGCAGTGTCTGGAAGCCAGGGAAGTTATCGTCAGGACGTTATCAGCACAAGGGGATTCCCAGGACTCCCCCGTCGCCGTCATTCCACACAACCTGCTGGTGCCTCCGCCCCCCCCGCCTCACCCCATGCCCAAGCCCAAGCCATTAGCAAGTGCCAGAGAGCCAGAAACCAAAGAGGAGCCCGGCATGGCGCACAGCATGCGGCTGAACGAGTCCTGGGAGCCGGCCTGTTCCCCCTCACCCCTGCACCACGGACACTCCCTGGAGCCCCCCGGCCCGCACTTCCACGGCTCCCCGCATGACCACCGCTCCCCCTCCCCGCAGAGGATCCTCCCGCAGCCTCAGGGAGCGCCCATCCCCAACACAGTGGCCAAGGCCATGGCCAGGGAGGCTGCCCAGAGAGTGGCCGCTGAGAGCAGCAGGaTGGAGAAAAGGAATATCTTTAGCGAAAGGAGTAATGCCATTCACCCTCTCAACTCGGACGAGGAGGAAGATGGGTACGAGTCTCCACACATGAAGAGGCGAGGGGCTTCTGTGGATGAGTTCCTGAGGGGCTCAGAGCTGGGCAGGCAGCCCCACTACAGCCACAGCGAGGACTACCAGAGTGAGAGTAGCCGCGGCTCAGACCTGTCCGACATCatggaggaggatgaggaggaccTGTACTCGGAGATGCAGCTGGATGAAGGGGGCCGGAGACGCAGCGTTACCTCTCACAATGCGCTCAAGGATGGGCTCCCTGCTCTCACTTTGGCCTGGACTGCCTCTCTGTTCCTCAAGCAGCCCAACATTATTTcaatcccagaatgcactgcagcTATCCCTAGACCCCATCAGTTAGAGGACTGGGACCTTCTGCGGGAAACATCACCCCAAAAACAACTACGCAGTAAAAAACTTTTTAGTATCCCCGAGGTGGCGGAGGAGGACTTTGACCCTGGGGAGATGACCCAGAGGTTGAGGCTGGAAGAGGGCAGCCGTATTTTTCGGAGGAACCCGAATGAGTTTAGATGCAGCGCACAGGAACGATGCCGAACCTCCACTAAGGTCTACACCCAGGATGTCAGAAAGCAGTATTTTCTTTCTCCCACCAAATGCAGCGTCCTACAGAAACAGAGGTCGGCGCGTGGCGTGGACAACTGCCCGGCCTTCGAAGACCGAGTCTGCAGCAGGCTCAGCCGGCAGACAACACGGAGCCCCGATAGTGGTCTGGATTGTGGCAGTGAGGAAGAAGAGGCCCGCTCCCTGGGGTACAGGAACCATTGTCACGTTAGCCCTCTGAGAGCAGCACAGGGGCTCAACGTCAGCAACTCCACCTGTGACATGGGCCCAGAGCGCAGGGTCTCATTGCAGTCCACGGGTCGGAAGAGAACTCTGACCAGGCAGAGCATCGTTGAAGAAGATTTCTGCGACGTCCCCCTGTCAGCAATAAAGACGGTGCACGTGGCGGATTTTAAAACCAGGGATCTGAAATGCAGGCCTAACAGGGACATGCAACAAAGGCAACATAGGAACGAAGTAGTCTTGAATGAAGGGAGACATGAGGCCTGCAGGACTGATGGCAGAATGCCTCAGAAAGACTTTAAGGCAGGAATTACAGTTGCAAAGCTGGCCAACAGGAAAATGGAAGAAACTCTGGAAATTTTTGGTCCCTATTTCCCTGACATGCATGAAGCTGTAATGcggattttgtttctttgttttaagaTTTTAGGAAACCCTTCCTCCACAGGACGATCCGACAGACTGGATCACTCGGGGCGAAGACTGTCTCATGGCTGTGCAGCCCAGCAGCGCCCCCGGCCAATGATGGTCCCGTCTATTGAGATCACCATGGACAGTAACAGTGAAGGGGGCCACTCCAGGTCAGGGAGTGAGGGGAATCTCTCAGCTGACAAGGACGATGTTTACTATCACAGTGTAGCTGGACGCAAGAAATGGCCATTACAGCGCAGTATGGCCTCTGAGCATCGATATGATGGCTACGGTGGCCGGGAGCGCCACTCACCCGAATACTACGAAGAGTCGGAGCCCGAAGACATGTCTCGGATATTTGTGGCGCTGTTCGACTACGATCCCCTGTCCATGTCCCCTAATCCTGATGCTGCAGATGAGGAGCTTCCTTTCAAAGAAGGACAGATCATCAAGGTGTATGGAGACAAGGACACCGACGGCTTCTACAGAGGAGAGATCTGTGGCAGGGCTGGCCTTATTCCTTGTAACATGGTGTCAGAGATTCAGACAGATGACGAGGACATGATGGAGCAACTGATCAAGCAAGGCTTCCTCCCCCTTAACACTCCTGTAGAAAAAATAGTGAACTGCGAACGTTTCAAAGACAACGCGCGTTCAGTTAACCGCAGGTCCCGAAAATCCAAACGAGagagaaacagacgcAGCGGGAGGCAGCACTCTGTGTCCACCAGGAGGATGGTCGCTCTCTATGACTATGACCCCCGCGAGAGCTCCCCCAATGTTGATGTTGAGGGAGAAATAAATGGACATAAAGGTCTTGTTCCTTCAAACTTTCTTGAAGAAGTGCCTGACGATGTAGAAGTCTATCTAACTGACACACCATCTCGATATGCACAGGACACCCCAGTGCGGACAAAGACCAAAAGGGTTCCCTCCGAAAACACTGGTTCCTCTAGACGAGCCCCTTCCCCCACTGTGCGCCAACACCAGCCTGCTTCTGGACCAGCTGCCATGGGCCCAGGCAGCCCCATCAGGGGCAGAGACTTGTcctccaaaaagaaaaagggactGCTCTCCAAAGGGAAGAAACTGTTGAAAAGACTCGGAGccgtaaaataatatatattttttctatatgcatacacacacatacacagaaaaacatataaatatatagatagataagtATCATGGAAAAATTCAAATTCTTCCAttcttgtaataaaaaaaaacatgaaactagGTGTCAAAACTAGGATTTTCATGACTACTGTCAACTAGTCAAGTGCTGTACAACACCTTTCTAGTTGCAAGCTATTTTGTTtggggttgtttgttttaaatccaggGATTTATCAGACGACAACAGGACCAGATGTCAAAATCTTTATGCAATTTCTACAGATGAGTGTGTTTTTCAGGGCGGCTCACAAATTATTTGCTAGAACAAGAAAGCAAAGGAGGAATTTGGAGTaataagaaacattttctgtttggaATGTAGATCAGTCAAGTATAACACAACAGTATTTCTTACCTCTATGAAAACCAATCAGCTTGGGAATCAGACTAAATGGTCCCTGTTCTCATTCTTTTAAGTTGTGCTCTACAATACTTAAAAGGGGGGGATGTTTAAAATCAGTTCCAGACGAGTGTGATAAAACGGTACAGCTGATAGAGGTACTTGGTGTACTATTTTGTTCCAGGAAAGGCTTTCGCACAGGAGCCTCCTCCTGACTCGTTTCTATACAGCTCATGTTACAGCATTATGTCAAATGTTTGAAATCCTATTATGCCTTGAAGTGGGTCATTCAATTTCTCGGATATGTAAGGACACGTACCTCCATTTTTGCCAAGAACCGAAATCAGTGTGTATCGACTCCGCCTTTAAACATCACAAAACCTCTAGGCCACTGATTCATTGAATATAAGTTTTTAGATGGCACGTGGCTTcagcaaagtttaaaatgtagtgttttaaaaaagacTAGTTCATCAGTATTAAATGGTCATGAAATGCCTAGTTGAAACCAGCCTCGATGTATTTGCCTTATAAATGCACAATGGTTTGTATTTTGTCCAGTAAATGGAGCAAGAATAGTTTGTATGTACTGTGTGCATTCATGTTCCTTCATTCCCTCactagaaaatgaaaaaaaaaaatgtagttacaaGTTATGTGATCAAGTGATGTGCTGCGAACTACATTTCCATCCATCCTTTAGGGTTACCTGAACATTGAAAATCAGTGTTGCACATCTGCAGCGTTCCCCCCCGACACGGagtatttaaaacagaaaacgaCAAATTCAGCATCACAAAGCGGAGCCCTGTCTCAAGGGTCACCATTAAACCTCGAAGTCTTAACTTTGATCAAAGCTCCATGTTAGGAAGAAGGGGAAGGGGGAGCTGGAAACGGTTCCCCGCTACACTAGTTTACTGCCATTTTAGCCAAACAGGAACTGAAGGTAGTTTACTGAATAACAGCGCACTTCAAACATTGTAATGGCTTTGCAAATGGAAATCTTCAGGCTTAGTCCGTCTTGAAACTAAGGACAGGAGTCCATGATTAAAAAAACCAAAACTCTTTACTAGAAGCCAACTGGAAGTTCTGAGTTCCTACCAATTCTCTTTATTTGCTACCTTTGTTCCACACAACTAAATTagctttaattttctttcaaattaaatacttcaAACCTTTAAAGAGAGTTTAATCTAAAACAGCCAAAAGAGAAGGAATGTAAACTCAAAAGAACTTGCATAAGTtagccaaaacacacaacagcattTTAACTCATAAATAGATGTAAATTACTGCAAGTCATGTAACCATAATTCAGTGCTCTGGCATTGcttatatacatattgtttgaGTGACTGTTGCTCTTTTTGTACTTTGtccatttgtaaattgtttttaatgtttatactTGATTTTCAGACTgcctttttttgtaaattaaagtttatAATCAAACAGTGCAAGCTATCCCCATGGTGTCTTCAAGAAACATAACTGTCTGCAACTGTGTGCTAGCTTTATGAATCTAAGAAAATCATTGGCCTATATTTGTGGTTATCAACTGTGCGAGTGtgcatgtgtacatgtg
>TU149036
caGGTAAAGTCAGACTATGATCAGCTTAGAGAAACCCTTGGCATTGTGACTCAGGAAAGAGATTCGGCCCTGCAGGAGAAGAAACAGCTCCAAGGCAAACTGGAGAACCTTGAGCAGGTCCTAAAGTGCCTGGTTGGAACTAATAGCTGGAGCTGGTACGGCCTTGGAGGACAGGAGCTGTCACCCCTGTGTTAGATTAAGA

Function

GO: NA

KEGG:

id description
K17591 RIMBP2; RIMS-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018820 True 6710 mRNA 0.48 22 21848370 21897700
TU149036 False 202 lncRNA 0.50 2 21848415 21853057

Neighbor

gene id symbol gene type direction distance location
AMCG00018821 NA coding upstream 104631 21715850 ~ 21743739 (+)
AMCG00018823 NA coding upstream 156262 21691311 ~ 21692108 (+)
AMCG00018806 rflna,LOC106585519 coding upstream 936293 20896914 ~ 20912077 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding upstream 1125256 20706497 ~ 20723114 (+)
AMCG00018803 NA coding upstream 1142417 20698222 ~ 20705953 (+)
AMCG00018826 NA coding downstream 132500 22030200 ~ 22036605 (+)
AMCG00018825 NA coding downstream 149602 22047302 ~ 22074621 (+)
AMCG00018828 NA coding downstream 193003 22090703 ~ 22091323 (+)
AMCG00018829 NA coding downstream 193646 22091346 ~ 22091618 (+)
AMCG00018827 NA coding downstream 217910 22115610 ~ 22138293 (+)
G118885 NA non-coding upstream 166647 21681320 ~ 21681723 (+)
G118863 NA non-coding upstream 425600 21370910 ~ 21422770 (+)
G118771 NA non-coding upstream 916966 20922368 ~ 20931404 (+)
G118644 NA non-coding upstream 1227823 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 1242273 20604704 ~ 20606097 (+)
G118999 NA non-coding downstream 649572 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 660513 22558213 ~ 22558419 (+)
G119006 NA non-coding downstream 663362 22561062 ~ 22561280 (+)
G119007 NA non-coding downstream 664852 22562552 ~ 22562810 (+)
G119008 NA non-coding downstream 666670 22564370 ~ 22564707 (+)
G118815 NA other upstream 659124 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1075784 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1153176 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 1245055 20601956 ~ 20603315 (+)
G118636 NA other upstream 1254231 20593366 ~ 20594139 (+)
G119507 NA other downstream 3336382 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 3568391 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3780977 25678677 ~ 25718426 (+)
G119762 NA other downstream 4562920 26460620 ~ 26461227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location