AMCG00018822


Basic Information

Item Value
gene id AMCG00018822
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21897806 ~ 21909489 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018822
GATACACACAATACAACTCGGAAAGCCTAACAATTGAATGAACTTCAAATTATTCGTGCGTGATTATCTGGAGCGTGAGGAGGTGGGGCATGTACAGTGAAGAATAATTTAAcgacatttattttgtcaTCAAGATGACTGGAAGAGCAAGAGCCCGTTCGAGGGGAAGAGCTCGTGGACAGGAAGCTAGTGTTCCAGGACCGgCTCCAGTGTCTTCAGCGGAGGCCAGGCCAGTCCCGCCAGCTGCAGAAGGGGAGCTGGTGGGCCGTGGAAGACAGAAAGGCGTACCTGGGGCAGTCAGATCTGAAAGTGCAATTCTTCAGATTTCTGCTGGCTTTCATCAAGTGAAGATTGGAGAGCGAGGGGGACGTCGTCGAGACTTCCATGATGTGGGGATCAATACCAGGGGAGCCATGGAACACGTGAAGGAGTCAAAAACAGGTGTGTCGGGTTCTGCGATTGAGCTGAGAGCCAATTATTTCCGAATCCTGTCCCGGCCCCAGTGGGTTTTGTATCAGTACCATGTGGACTACAACCCGCCAATGGAGTCACGCCGCCTGCGGTCTGCCCTCTTGTACATGCATGACGAGACTCTGGGCTCCACTCGCTCCTTCGATGGAGCCATATTGTTCCTGCCACATAGACTGCCAAACGTGGAGACAGTCTTGTTCAGTGAGACACggcaaggaaataaaatcaagatTACAATAACCCTGACAAATGAACTGCCTCCCACCTCCCCAGTGTGCCTTCAGTtctacaatattattttcagaaggaTTCTGAGGATGTTGAACATGCAGCAGATTGGACGCCATTACTACAACCCAAATGATCCCCTGAATATCCCCCAGCACAGGCTGATGATTTGGCCTGGGTTCACCACCTCAATTCTGCAGTACGAACGGAGCATCATGCTTTGCACTGACGTGAGCCACAAGGTGCTGCGCAGCGAGACGGTGCTGAGCTTCATGTCTCAGCTGAGGCAGCAGGCTGGAGACCAGCGCTTTCCTGAGGCTTGCACCAAAGAGCTGGTGGGCCTGATTGTCCTCACTAGgtacaacaacaaaacatacaggATCGATGACATTGCTTGGGATCAGACTCCGAACAACACTTTCACAAGACGGGATTCAGAAATTTCCTTCAAGGACTACTACAAGACTCAATATAATTTGGAAATCACTGATGGTAATCAACCACTTCTGGTCAGTCGCATCAAGAGAATGGGTCCTTCCGGCGCCCCTCCCCCTGGCCCCGCCATGCTGGTGCCCGAGTTCTGTTATCTCACAGGTCTGACGGACAAGATGCGCAGCGACTTCCACATCATGAAAGACCTGTCGACGCACACGAGACTCACCCCAGAGCAGAGGGAGCAGCGCCTGAGCCGCTTCATCACCAACATCCACAGGCATGCGATTATTTCAAGTGTGGATTTGGTCAATACCAACACACAGGCAGAACTGAACAGCTGGGGCCTCAACTTTGACAACAAGCTCCTGACTATTCAGTCCAGAGTCCTTCCTGCAGAAAGGATCTCCCAGGGACCGAGGACTTATGACTACAACCCGTGGGTGGCAGATTGGTCAAAGGAGATGAGGGGAGCTCCGCTGATCAGCAGCAGACCACTGGATGAATGGATAATGCTGTACACCCGTCGCAATGCTGACAGTGCTCAAGCACTGTTGCAGAATCTGCACCGGGTGTCCCAGCCGCTAGGAATCCGCATGCAGAGAGCGGCCATGATCGAAGTTGAGGATCGACAGGAATCCCTGCTGAGGGCCTTGCAGCAAAATGTCGGTCCGAATACTCAGATGGTGGTCTGCATTCTTCCGACCAACCGCAAGGACAAGTATGACTGTGTGAAGAAGTTCCTGTGTGTGGACTGCCCCACGCCCAGCCAGTGTGTGGTGGCGCGCACCTTGAGCAAACCACAGGCGCTCATGACCATCGCCACCAAAATTGCCCTGCAGATGAATTGTAAAATGGGGGGTGAGCTCTGGGCTGTGGACATACCACTAAAGCAGCTCATGATTGTGGGGATCGATTGTTATCACGACACCTCTGCCGGGAAGAGATCCATCGGAGGGCTGGTGGCGAGTCTCAATGGCAAAATGACCAGGCAGGCGTGGATGAAGTACAATGACGCCTTGCCGACCCGTATCATCGTGTACCGAGACGGCGTCGGTGACGGGCAGCTGCAGAGTGTGGTCAGCTATGAGGTGCCACAGATCCTGGACTGCATCAAAGCACTGGGACAGGATTACAACCCCAAACTCACCGTCGTCGTTGTGAAGAAGCGCATCAGTTCGAGGTTTTTTGCCCGAGTTAGTGGAAAGCTGTCCAATCCACCCCCTGGAACGGTCATCGACACGGAGGTCACTCGACCTGAATGGTATGACTTCTTCATTGTGAGCCAAGCTGTGCGACTCGGCAGCGTCTCCCCAACGCACTACAACGTGGTGTACGACAGCAGCGGCTTAAAACCAGACTACATGCAACGCCTCACATACAAGCTGTGTCACATGTACTACAACTGGCAGGGAATAATCCGAGTGCCGGCCCCCTGCCAGTACGCTCACAAACTGGCCTTCCTGGTGGGTCAGAGCATTCACAAGGAGCCCCACACCAACCTGGACGACTTCCTCTATTACCTGTAACTGACAGAAGGTGTACAGCTCAAATGCCCGAGGATAGGAAGTCCAGACAAATTGGCACTAAAATTGgatacatttcagattaaacgTGGTTGAAGCCAAGCATGTTTAACATCTGAACGTTGcttatttttcagttcagtGAGGATTTTCGTATGAAAATCAgttaacattttgttatttgatgatggtttattattattattattattattaattagtacTCTGCAGGAAAACCGAGAGAAACACCTGCATTTTTCAGTTGATTTGAATTGGCTTTTGAAAGGTTTATatagcagttaaaaaaaaaaaaaaaaaacctttgaagCACTTACTCTTCACAATCAATAACATTGCCAGTTATctgatgtgaaatgtttttttgaatgTGTGCACTTATACTGTTCAGGTATGTTCTGAATTTAAAACCTGTTGATTGTTCTGCAACATggaagtaaaaaacaaaaccattaccTTTGCTTCATAATTTGGAAGGGTTGGCAATAAAAGGTCATCATTAAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007281 germ cell development biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018822 True 3179 mRNA 0.49 20 21897806 21909489

Neighbor

gene id symbol gene type direction distance location
AMCG00018818 LOC107665254 coding downstream 222610 21672274 ~ 21675196 (-)
AMCG00018817 NA coding downstream 231122 21648834 ~ 21666684 (-)
AMCG00018814 adgrd1 coding downstream 274255 21611950 ~ 21623551 (-)
AMCG00018819 NA coding downstream 297134 21597469 ~ 21600672 (-)
AMCG00018815 sfswap,LOC104965082 coding downstream 475154 21401894 ~ 21422652 (-)
AMCG00018824 fzd10,LOC108441898,LOC103024082,LOC107669258,LOC107659609,LOC107574912 coding upstream 43745 21953234 ~ 21954948 (-)
AMCG00018830 NA coding upstream 267469 22176958 ~ 22223700 (-)
AMCG00018831 NA coding upstream 382492 22291981 ~ 22292847 (-)
AMCG00018835 med15 coding upstream 513917 22423406 ~ 22438354 (-)
AMCG00018840 NA coding upstream 571650 22481139 ~ 22487712 (-)
G118892 NA non-coding downstream 179003 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 195758 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 216249 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 281313 21594994 ~ 21616493 (-)
G118870 NA non-coding downstream 330553 21567009 ~ 21567253 (-)
G118947 NA non-coding upstream 241865 22151354 ~ 22153714 (-)
G119048 NA non-coding upstream 718056 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 754344 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 757440 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 852871 22762360 ~ 22766026 (-)
G118727 NA other downstream 1199979 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1207884 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1219369 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1291063 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 1373987 20488935 ~ 20523819 (-)
G118936 NA other upstream 170975 22080464 ~ 22113695 (-)
G119144 NA other upstream 894856 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 3165909 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3225282 25134771 ~ 25171644 (-)
G119545 NA other upstream 3276718 25186207 ~ 25187408 (-)

Expression


Co-expression Network