AMCG00018824 (fzd10,LOC108441898,LOC103024082,LOC107669258,LOC107659609,LOC107574912)


Basic Information

Item Value
gene id AMCG00018824
gene name fzd10,LOC108441898,LOC103024082,LOC107669258,LOC107659609,LOC107574912
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21953234 ~ 21954948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018824
ATGACTCCCTCTGTCAGCCTGAGTGTTGTCTGCCTTCTCCTTGCCTGCGAGGCTCTGCACTGCTCTGCCATCAGCTCCATTGATCCTGATCGCCCGGCGGAAGGAAGATGCCAGCATATCGTGATTCCCCTATGCAAAGACATTGGCTACAACATGACCAGGATGCCTAACCTGATGGGCCACGAAGACCAGGGCGAAGCTGCCATTAAGCTGCACGAATTTGCTCCCCTCATCGAGTTCGGATGCCACAGCCACCTGAAATTCTTCCTCTGTTCCCTGTATGCTCCGATGTGCACGGAGCAAGTGTCCACCCCCATCCCAGCCTGCAGGGTGATGTGTGAGCAGGCGAGGCAGAAGTGTTCCCCCATCATGGAGCAGTTCAGCTTCAAATGGCCCGACTCTCTGGACTGCAGCAAGCTCCCCAACAAGAACGACCCCAACTTCCTCTGCATGGAAGCCCCCAACAACGGGTCGGACGAACCCACCAAGGGCTCCAGCACCCAGCCTCCGGAGTTTAGACCACCGAGGCCCAACAGCGGCCAGGATTTCCCGCTCAAAGACACCAGTGACAGGGAGGCTTGTGGCAACCCCGGGAAGTTCCACTATGTGCAGAAGAGTGAATCCTGCGCCCCCAAGTGCTACCCCAAAGTGGATGTCTACTGGAGTCAGGGGGATAAGCAGTTCTCCCTCATTTGGATCGCCATCTGGTCCATCCTGTGCTtcttctccagctccttcacCGTCCTCACCTTTCTTATTGACCCCCAGCGCTTTAAATACCCCGAGAGGCCCATAATCTTCCTCTCCATGTCCTACTGCGTCTATTCAGTGGGGTTTCTCATCCGGCTCTTCGCCGGGGCGGACAACATTGCCTGTGACCGGGACAGTGGGGTTCAGTACGTCATCCAGGAGGGCTTGGAAAGCACTGGCTGCACCATTGTCTTCCTCATTCTGTACTACTTCGGCATGGCTAGCTCCCTGTGGTGGGTGATTTTGACTCTGACTTGGTTTCTGGCAGCCGGCAAGAAATGGGGGCACGAGGCCATTGAAGCCAACAGCAGCTACTTTCACTTAGCTGCCTGGGCCATCCCTGCAGTGAAGACCATCATGATTTTAGTCATGAGGAAAGTGGCAGGGGACGAGCTGACTGGCATCTGCTACGTTGGGAGCATGGATGTCAAAGCCTTGACTGGGTTTGTACTCATCCCCCTCTCCTGCTACCTCATCATCGGGACCTCTTTCCTGCTCTCTGGCTTTGTCGCCCTTTTCCACATCAGGAAGATCATGAAGACCGAGGGGGAGAACACGGACAAGCTGGAGAAACTCATGGTGCGGATCGGGGTGTTCTCCGTCCTGTACACCGTCCCCGCCACCTGCGTCATCGCTTGCTACTTCTACGAAAGGCTCAACATGGATTACTGGAAGGTCCTGGCCAGCGAACAGAAATGTctggagagcagcagcagcagcagcagagttCCAGATGCAGAAGAGTGCCTCATGAAAAACTCCATCCCAGCTGTGGAGATCTTTATGCAGAAAGTTGAGGAAGAGAACAAGAAGAAAGCCTGCCAGTGTATTCACAAGCAGTGGACCTTATATAAAACCTCACCCTCCTCTTAA

Function

symbol description
fzd10 Enables Wnt-activated receptor activity. Acts upstream of or within Wnt signaling pathway and epiboly. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastoderm; central nervous system; forerunner cell group; margin; and tail bud. Orthologous to human FZD10 (frizzled class receptor 10).

NR:

description
PREDICTED: frizzled-10-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0090504 epiboly biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02842 FZD9_10, CD349_50; frizzled 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018824 True 1623 mRNA 0.55 2 21953234 21954948

Neighbor

gene id symbol gene type direction distance location
AMCG00018822 NA coding downstream 43745 21897806 ~ 21909489 (-)
AMCG00018818 LOC107665254 coding downstream 278038 21672274 ~ 21675196 (-)
AMCG00018817 NA coding downstream 286550 21648834 ~ 21666684 (-)
AMCG00018814 adgrd1 coding downstream 329683 21611950 ~ 21623551 (-)
AMCG00018819 NA coding downstream 352562 21597469 ~ 21600672 (-)
AMCG00018830 NA coding upstream 222010 22176958 ~ 22223700 (-)
AMCG00018831 NA coding upstream 337033 22291981 ~ 22292847 (-)
AMCG00018835 med15 coding upstream 468458 22423406 ~ 22438354 (-)
AMCG00018840 NA coding upstream 526191 22481139 ~ 22487712 (-)
AMCG00018839 NA coding upstream 543071 22498019 ~ 22537319 (-)
G118892 NA non-coding downstream 234431 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 251186 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 271677 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 336741 21594994 ~ 21616493 (-)
G118870 NA non-coding downstream 385981 21567009 ~ 21567253 (-)
G118947 NA non-coding upstream 196406 22151354 ~ 22153714 (-)
G119048 NA non-coding upstream 672597 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 708885 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 711981 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 807412 22762360 ~ 22766026 (-)
G118727 NA other downstream 1255407 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1263312 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1274797 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1346491 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 1429415 20488935 ~ 20523819 (-)
G118936 NA other upstream 125516 22080464 ~ 22113695 (-)
G119144 NA other upstream 849397 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 3120450 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3179823 25134771 ~ 25171644 (-)
G119545 NA other upstream 3231259 25186207 ~ 25187408 (-)

Expression


Co-expression Network