AMCG00018834


Basic Information

Item Value
gene id AMCG00018834
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22401501 ~ 22422814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018834
ATGCCCCTACTCCAGAGCCACAACACCaggctgagggagagagggcatGCTGGGCCACTGAAGGGGAAGTTCACTCCTGGAAGAGAGCCAGGCTCTCCAGCTCTTAGAGCTCTGGGGACCCCCACAGGGGCGTCCCCCCCTCAAGAGGAGGGCAGTGAGCAACACATAGCAAGTCTGAAAGCAGATTTCATGAACAAGACTCTACTCCAGCAATGCCAAGAACTGGTGAAAGTGATTGATGAATACCCAGCTAAGGAGCTGCACTTGATTTTCCCCTGGCTGGTAGAGACAGTCCTTGGCAGCCTGGATGGCGTCCTTCTAGGCTGGAACCTGCGATACCTGCAAGCCAGGACAAACGAGTACCTTACAGCTGTGGATTTCTTGGATCCCAGtggTCCAATGATGAAACTTGTGTACAAACTGCAAGCAGAGGAATACAAATATGAGTTTCCAGTCAATCATCTGCCTggtCCTGTGAAGGCTTCCATCCAAGAAGGCGTCCTCCCAGATTGCCCGCTGTTCCACAACAAGCTGCAGTTTCCTCTGCCTGGCCTAATGAGCCTCACCCTCTCACTCAATCCATTTGAATATTACATGTTTCATTTTGCTGCCAGCCTTACATCTCTAAGGtGTTACCCAGTGGGGCAGCATGTCAGTACCTCAGACAGTGCGTACTTCCTATTGGTGGACAGCTACCTGAAGTACTTCCTGCCAACAGAGGGCAGCGTACCGCCCTCTCCTTTCTCAGATGTCAGAGGCGCAGTGTCCCCTCCTGCACCCAGCCTCCTGAAGCGGCACATTTCCCACCAGCCCTCAGTCAATGCCGATCCAGCAGCCCAGGAGATCTGGAGGTCCGAGACGCTTCTTCAGGTTTTTGTGGAGATGTGGCTTCACCATTACTCCCTGGAGATGTACCAGAAGATGCAGTCCCCACAGGTGAAGCTGGAGGTGCTCCAGTACCGTCTGGGTATTTCCAGTATGCACTACAGCACTCCTGTCCTGCCAGGCTATGGGAACCTCCACACGTACCAAGAGCCCTTCAGCCCTACTGAGGAGCACGTGTTGGTGGTGAGGCTTCTGGTGAAACATCTCCACGCCTTCTCCAGCAGTCTGAAGCCAGAGCTGATCTCCTCCTCACCCTCCGCTCACTCCCACACCAGCCCTCTGGAGGAGTTCAAAAGGGTCGTGATCCCCCGGTTTGTGCAGCAGAAGCTGTACGTGTTCCTTCAGCACTGCTTTGGTCACTGGCCCCTCGACGCTTCTTTCAGAGCAGTTTTAGAAACGTGGCTCAGCTATATACAACCGTGGAGATACATCCCTGAGAAACACAATCCCCAAGTGGATAATCAGAACCGGAGTGTGCCAGACAAATGGGCCTCCTTCTTGCAGGAGAATCTGCTGATGTACACCAGACTCTTCCAGGGCTTTTTAAACCGGGCAGTACGCACCGACCTGGTTAATGCCAAGAACGCGCTGATGGTTTTCAGGGTGGCGAAAGTCTTCGCTCAGCCCAACTTGTCAGAAATGATCCAGAAAGgaGAGCAGCTGTTCCTGGAGCCCGAGCACGTCCTCCACCACCGCCAGCACCGCCTCTTCATGACACCCAGTCATGGTGGCAGCTTCCTGTCCTCACGCCAGCCCATCAACACAGACGGCGTCTTCAAGGTCAAGAACCACGTGTACAGCCTAGAGGGCCAGGACTGCCAGTACAAGCAGATGTTTGGGCCCGAAGTGCGAAACAACGTGTTAAAACTGGTCCGGATGATCGCACAAGCCAAACAAACTGCAAGGTCCATATCAGAGCACTCTGCAGAAGCAGCTGCCAGTCAGTCCTTCCTCTCCTGGTTTGGGTTCGGTTCCTCTGATCTGAACACATCCTATACAGGGAATGAGCTGGATGATATGGGGTTGGAAACCATAAGGAAGACTGATGAGTATTTGGAGAGAGCGCTGGAGTATCTCTGTCAGGTATTCCGGTTGCCTGCAGGACAGCTATCCCAGCTGATGGTGAGCTTTGTGTCGACGCAAGATGATGCTGGAACCCGGCAGCTTCCTGACTGTATACCGGGAGAGAACGGACCGGTCCTCACCGATCTGGGAAGACTGCAGATTATTAACGGACTCCGCAGATTTGACATCGAGTACCAAGGGGACCCAGAATTACAGCCCATAAGAAGCTATGAGATCGCAGTTCTTGTCCGTCTGCTCTTCCGCCTGTCGTGCTTCATTAACCAGCGGTTTGCAGGAGAGATGAACGCCCTCTGCAGCAGACGTGGCTTTGTGGGTCGTTTGAGCCGGCACTACCTGACCCAGCCCAGTGCCGGACCGATCTCCAGGAGAAGCCCCGCGACCCTCCGTGGTGCAGGGAGGCAGACCCGCCCGCGCGTCAGCCTGCGGTTCCTGGCCAGCATCCGCACTCTCCTCACCGTCTTTCTGCTCTACTTGCTGGCCTCGTTTTTTTCCATTGGCCCTCTGTCCTGCACCTTCTGGACATTGCTAGCTTCTCGTTACCCACGACCTTTTCGCCCCGATGCCCCTGTTGTTGATGCCCAGAGGACGACTGTCCCCCCCGGCGACATGGACTCGGGTCCGAGGCGGGTCGCGGCGCTGGAGCGGGACCTGCAGTTCCTACAGCAGCAGCACCGAGACACGCTGGGCAAACTGCATGTGGAAATAGAGCAGCTCAAACGGGACAATAAAGGGAGCGCTGTATCCTCCAGTGCCAAGCCAAGCGGGCGCAGAGCCAGCCAGCAGATCTTAGCATCCTCAGGTTCCTGTAGGAAGACAAATAGGCCACAGCTTCTGCAGCAGCAGGGAGATTCCCAGGCATGTAAAGGGAATTTCTTGGAGCAGACCGTGCACACACTGGATCTGCACAGCGGCCCCCCACAGGACCTGGCCCACAGCGACCTAGAAATCGGTACCGATGCATCCAGCCTCCCTGCTGCCCTGACCCACCTGGAGCCTGAGCCGCAGGGGGGTCTCATCACTTCCCTGCAGCCCCTGAGGATCCACTGCAGCTCCTCCCAGCCCCCCCGGGCCCCAACCCTGCAGGAGTGCGAGGTCATCATCCGCCAGCTCTACAACGCCAACAGCCTGCAGTCCCAGGAGCTTCTGCGCATGAAGAGTGTTCTGAAGGATATTGtcatcaacaataacaaaatgacCCCTGAAACTTACATTCTCACCAAGGCGTACCTCACCGACACCACCAGGATTGACGAAGCTGCAAGATTTCCAAAACTGCCTCTAAAAGCACTGCCAAAGAAACTGCCCGAGGCCCAGCCTACCGTGGCAGAGCGGGTGATCCTGCCAGCTCTCAAGCAGTCGCTGGGGAGCAGCTTtgcagagagacagaagagagCGCAGGCGGTGCAGAAGAGCCGCTTACGCAGAGCCGTGCACTGAGGGACTGACATGTTACAGACACTGTATAGAACAGGCTTCCTTTAGCAGTAAAATAGACGCATACTACACATTTCATATCCAGACTTCTTTTATCATACAAATCTGCTGTGATTAAGTTGCTCTAAGGTTAGTGGTTGAGCTGGCTGAACGGTTTCCTATATACACGCAACATGGCAACACAATCTCTATATTCCTGACTCAGAACAGTCACTATATGAACAGTTGGGGAACAAAATGCTTTGGAGTCCAGCCAGTTTGAAACATGGGGACTTTCTGGAAGATAATGATCAATAAACATGGGAATCACTAGaaataaagtgctttaaaaGTT

Function

GO: NA

KEGG:

id description
K12353 SMPD4; sphingomyelin phosphodiesterase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018834 True 3739 mRNA 0.54 26 22401501 22422814

Neighbor

gene id symbol gene type direction distance location
AMCG00018827 NA coding upstream 263208 22115610 ~ 22138293 (+)
AMCG00018829 NA coding upstream 309883 22091346 ~ 22091618 (+)
AMCG00018828 NA coding upstream 310178 22090703 ~ 22091323 (+)
AMCG00018825 NA coding upstream 326880 22047302 ~ 22074621 (+)
AMCG00018826 NA coding upstream 364896 22030200 ~ 22036605 (+)
AMCG00018833 NA coding downstream 17989 22440803 ~ 22449329 (+)
AMCG00018832 crkl,LOC106566436,LOC106563168 coding downstream 32425 22455239 ~ 22460417 (+)
AMCG00018836 NA coding downstream 181537 22604351 ~ 22627498 (+)
AMCG00018838 derl3,derl2,LOC107667536,LOC107602852,LOC105014174 coding downstream 207731 22630545 ~ 22636051 (+)
AMCG00018837 NA coding downstream 228325 22651139 ~ 22659793 (+)
G118885 NA non-coding upstream 719778 21681320 ~ 21681723 (+)
G118863 NA non-coding upstream 978731 21370910 ~ 21422770 (+)
G118771 NA non-coding upstream 1470097 20922368 ~ 20931404 (+)
G118644 NA non-coding upstream 1780954 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 1795404 20604704 ~ 20606097 (+)
G118999 NA non-coding downstream 124458 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 135399 22558213 ~ 22558419 (+)
G119006 NA non-coding downstream 138248 22561062 ~ 22561280 (+)
G119007 NA non-coding downstream 139738 22562552 ~ 22562810 (+)
G119008 NA non-coding downstream 141556 22564370 ~ 22564707 (+)
AMCG00018820 NA other upstream 503801 21848370 ~ 21897700 (+)
G118815 NA other upstream 1212255 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1628915 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1706307 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 1798186 20601956 ~ 20603315 (+)
G119507 NA other downstream 2811268 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 3043277 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3255863 25678677 ~ 25718426 (+)
G119762 NA other downstream 4037806 26460620 ~ 26461227 (+)

Expression


Co-expression Network