AMCG00018836


Basic Information

Item Value
gene id AMCG00018836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22604351 ~ 22627498 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018836
ATGGACTATATCCAATTGAAAgccaccaacaaaacaaacctgagAGAAGGAAAGACAGAAGTGCTCATCTCTGTAGAGGGATGGCTCCAGAAGTCTCATTTCTACGACCTGAAGAAAAGAGGCCGTCTGCATCATGCCCAGGAGACCCTGAAAGAGACCTCCACGGGGAAGGAGGAGCTTCCAGGGATGGCTCTGCCTGGCAACAGCTCTGAGATTTGGAAGAGGCCTCGCTGTGGTGTCCCTGACTATCCTGGGCAGAAGGGAGTGTACAGAGGTCACCGGCAGAAACGATTTGTGCTTTTCGGGGGACGCTGGGAGAAGACTGACCTGACATACAAGATCGTCCGCTTCCCCTGGCAGATGACCAAGGACAAAGTGCGACGAGCTCTTCAGGAAGCACTGAGGGTTTGGAGTGACGTCACGCCGCTCACCTTCACAGAAGTCAGTGAAGGGAGGGCTGATATCATCATAGACTTCACAAGGTACTGGCATGGAGACAACCTTCCTTTCGATGGCCCAGGAGGCATTCTGGCACATGCCTTCTTTCCCAGGACACACAGGGAGGGTGACATCCACTTTGACTATGACGAGACCTGGACTGTGGGTAACAGCATGGGCACTGATCTGTTGCAGGTTGCTGCCCATGAATTTGGCCATGTCCTGGGGCTGCAGCACTCTCTGGTACCAGGGGCAGTGATGTCACCCTTTTACAGCTTCTCCTACCCGCTGGAGCTGAGCGAGGATGACAAGCAAGGCATCCAGTACCTCTACGGCGCTCGTCAGCCCACCCCGCCCCCCGATACCAACACTATCGAGACCAACGAGATCATCCCAGCATTAGAGTGGACGAAGAGCATTCCAACACTGCCTTATGTAAGTGACACAGAGCGTGCCGCCATGTCGTCTCCACAGCCCGACGCTTGTGACACAGACTTCGATGCCGTGTCCATGATCCGGGGAGAGCTCTTCTTCTTCAGGTCTCACGATTTACGGTGCATTGCAGGGACTTGTGAAAACTACTGGGTGTATGACGGGGAGAGACAGATCACTGGCCCAGACTCGGTGAGGAGCCTGGGGCTACCCGTCTCGGACATCCAGGCTGCCTTGATGTGGGGTGACGGCAAGAGCAAGAAGATCTACTTCTTCAAAGATGGCAGCTATTGGCGCTTCAACCCCTCTGCCAACCGCGTGGAAATGGTGTACCCCCGCAACATGATGGACTGGAGGGGAATCCCCATGAACATCGACGCTGCCTTCCAGGACAGCTATGGTTATGCCCACTTCCTCCACAGAAGGCATTACTGGAAGTTCGATCCTGTGGATGTGAAAGTATTGGAGGGATACCCTCGCTGGATTGGAATGGATTTCTTTGGATGCCCTGCATCTAACAACTATCGATAAGGCCTTTACCACCTGGAACAACAAAAGACTTAACTGTTCAAAAGGCAGTGTGTAGCAgtatctttgtttttagttttttacattttgtactgGTGCTAATCTTTACATCTGGCCTGTGTATAATGTTCTGTGATTTGGTCCTTTCTTGGGACATGCTCCTTAATCATCTAATAACTTATTTTCATTACAGGGACACAAGAATGCCTCAATAATGCAAGTTATCAATAACAGTAAAAAGAGAATTGAGATTTTCCCTGTATACCCTTCAAAATAGTTGGACATTGACATAATTCCTTGACATTTGTGTTGTCATTTCTGCATTGCTGTTCACAATGCGCTCCACCGATACTGTTACATTTATCAGTACTTTATTTGAAGCCTCCAACAAAAAGAAATAGAACACAATCATATTATGTCATCTCAGGAAAAGACCACATTTAAACATGGTGAATGGgcaaatattctgttttattttctactttttgtTCCTCAAACCAGTTCTTAATTCTCCTCGGTCCTTATATCAGCATAAAACTAATGCTCAGCAAAAGGGAAATGACAGTGCATTGTCTATACTTGCCTTAAAGAGACCCTCAGGAAGCACAATACCTCTGGAGCCACTAGGCCATGAACTATACAGGTACTAGTCAGTAGCTCTGGCTACAACTGGCACAATATATCCTGGAATTCAGAAGAGAGATCTCAGTGATTTTTGCAACAGGAGAATTCCACAGAAATCTCTTATCAGTCCTATGCTTTCTGTATCCTCCCATATATGAAACATCCCTGCAGTTCCATTACTCTTAAATTAAGAGTAAGTACTCTACTTATATTTAGTAAAGAGTTCAGTAATGTAAGCCAAATTGAAAGGTTCCTTAGTATTATTTCTTTTGGACGAATCTGCTTCTCAATGCATATTAGTATTCCACTGAATTATTGGACTTGCTTATGTGGTTGTTTTACATATTCAAGAGGTCATGCTGTGAATATATTGTCAAGTACTGGCAAAGACGGCTCATTGACAAAGAAGGGTTTTCATGttcatgtaatatttaaatgggTGATTTAATGATTGAGATTCATGcaaacatttgaatttgaaaagaaGTGTCCATATAAACTTGCAGAACAGAATCCTAATAAACCTACTGTCAGATGCACCAGTAACTCCTTTCCACCCTGCAAGATCATATATCTGAATATCTGATCGTTATACTTGCCCAAGGCTCCACAAAGACATTGAGATTCTTAAAAAGCAGATAATTGcacttcaaaatcaaaatgcaagtacttttttcttttgggaCTTTTTGCAACACTAAAACTCCACTACTGTATTCTGGTATGAGCCTACACATTCTGATCCAGAATCcagattcagttttttttatgcattcacagatgtgtttgtatttacatattttgaaatgtttgcagctacgctttataattattatgactattgtcattttgttgttattattataatgattgatCTTATTATGATGATCAGAGAGGGTGTGTTTTAATGATGGGAATGGCACTAGGGATGCAAAACCTGGGAAGTTATAAATCAATAGAAatgatgtagttttttgttttgctttgggaATTAATTTTGGGAGGAGTGAGAGGAGAGAGTCCTTCAAACTTAGCAAACACAACATCTGTCTTCTTACAAGGGCTACAGTGCATCTGTATCCAGCCAGGGTTGAGGCAACTCTGCTTGTAAACATCATAAGGATTTCATACTTCAAACTGTCATTGAAGAGTGAGGACCAAATTCGGATATAGCCTGTTGAGCCTCTGAACTGGGgaccacacacacaattctgatAATCACTTTGCCTTGTAAAAACTCCTCCAGATGTATCTTGAGGCAAACAAAAAGTGCATCCCTGAAGTGCTCATACTGATCTAATAATACTCCGAGACAGGATGTAGTTTTCAAGAATGAACCCTAATTCCTACAGTGAATTAGTGCCTGAGGCCACAAGGTGCAGTGTATCAGTGCTGGACACTGacttattattttctatagtgtatgtttttgtattgtgttataGCATTGTGATAGTATTATTCCATATAGGTGGGGTAAAGAGGCTTTAAAGGTCTTGGAAGCAGCTAGTCAAAGACAAGTCTGTAAGCACCCTTTTTGCTAGCACTGGTAGTTTTGTTTATAAAGTAAGATCCTTAGCACAAAAACTGTACAACACTCATTCACTGTTATTTTAACCAAAGATTCTCTAACACTTATGTACCTATGCTTTTAATCATCCATGTTTCTTATGATTGTTTTGACCAGAATATAtttactatgtaaatacatctGTATAAATTCTGGTCCAGTATTTTtggtacaaataaaaaaatctgttcttcttcttatatGTAAGGTGTTGAGTTTcattaaaaatcac

Function

GO: NA

KEGG:

id description
K07993 MMP11; matrix metalloproteinase-11 (stromelysin 3)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018836 True 3824 mRNA 0.42 9 22604351 22627498

Neighbor

gene id symbol gene type direction distance location
AMCG00018832 crkl,LOC106566436,LOC106563168 coding upstream 143934 22455239 ~ 22460417 (+)
AMCG00018833 NA coding upstream 155022 22440803 ~ 22449329 (+)
AMCG00018834 NA coding upstream 181537 22401501 ~ 22422814 (+)
AMCG00018827 NA coding upstream 466058 22115610 ~ 22138293 (+)
AMCG00018829 NA coding upstream 512733 22091346 ~ 22091618 (+)
AMCG00018838 derl3,derl2,LOC107667536,LOC107602852,LOC105014174 coding downstream 3047 22630545 ~ 22636051 (+)
AMCG00018837 NA coding downstream 23641 22651139 ~ 22659793 (+)
AMCG00018847 NA coding downstream 57379 22684877 ~ 22692816 (+)
AMCG00018845 NA coding downstream 84194 22711692 ~ 22719425 (+)
AMCG00018848 NA coding downstream 103230 22730728 ~ 22742264 (+)
G119016 NA non-coding upstream 25015 22579051 ~ 22579336 (+)
G119015 LOC106927871,LOC103148411 non-coding upstream 26638 22577501 ~ 22577713 (+)
G119014 NA non-coding upstream 27391 22576722 ~ 22576960 (+)
G119013 NA non-coding upstream 28661 22575459 ~ 22575690 (+)
G119010 NA non-coding upstream 36371 22567766 ~ 22567980 (+)
G119071 NA non-coding downstream 39394 22666892 ~ 22667141 (+)
G119100 LOC106566253 non-coding downstream 138053 22765551 ~ 22861808 (+)
G119177 NA non-coding downstream 351773 22979271 ~ 22982799 (+)
G119178 NA non-coding downstream 367478 22994976 ~ 22995190 (+)
G119231 NA non-coding downstream 467068 23094566 ~ 23108600 (+)
AMCG00018820 NA other upstream 706651 21848370 ~ 21897700 (+)
G118815 NA other upstream 1415105 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1831765 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1909157 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 2001036 20601956 ~ 20603315 (+)
G119507 NA other downstream 2606584 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2838593 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3051179 25678677 ~ 25718426 (+)
G119762 NA other downstream 3833122 26460620 ~ 26461227 (+)

Expression


Co-expression Network