AMCG00018837


Basic Information

Item Value
gene id AMCG00018837
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22651139 ~ 22659793 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018837
CCGGTGCGGCCACCTCAAGGCCGGCTTGCATAAGACGACATAGGGACAGCAGAAACGCGCACTGAAGTCCACACAGCCTTCCCTTTTCCCAATGCAGTTCCTGTTtatgctttgtgtgtttttactaTAATCGATGAAGTGCGAGATGGACGAAGGTGAAAGTGATACGAAAGAAGATACGGAGAAAAAGCCGTTTGCCTGGACCCTTGTACTGACTGTCATTGCTGCATCAGTTGGGGGGACTTTCCAGTATGGCTACAATATCTCCATCATCAATGCTCCAACACCACTGGAGGTGTACCAGGTCACTCTGATCTGGTCCTTCATCGTGTCCTTCTTCTCTCTGGGCGGTCTGATGGGCGCTCTGATAGCAGGACCTATAACTATTCGCTTTGGAAGGAAGAAGGCGTTGCTGCTGAACAACCTGTTTGTGCTGCTGAGCGCAGTGCTGGTGCTGACGAGCAGAGAAGCAAGGTCGTTTGAAATGATCCTGCTAGCCCGGTTCCTTGTTGGAATCAATGCCGGTGTCAGTATGAATGTTCAGCCCATGTATTTTGGAGAAAGTGCTCCTAAGAACCTACGAGGGGCTGTGGCCCAGACCTCAGCTTCATTCACTGCTTTTGGCATTGTCCTGGGACAAGTTTTGGGTCTCAgGGAGATCCTGGGCAGTGAAAGCTATTGGCCCATTCTTCTGGCCAGCAATGCTATGTACTTCTACGCCTCCTATGTGTTCCAGACGGCCGGAATTGCTGCAGACAAAATCCAGTATGTTACCATTGGGACAGGGGCCTGTGAGTTTATTGCAGCAGTCGCATGTaacTTGATGATTGAGAGGCTGGGCAGGAAGCTGCTGCTCATGGGCGGTTATATCCTCATGTCAGGGTGGGCGGTGGTCTTCATTGTGGCACTTTCACTGCAGGAGAAGGTGGCCTGGATGTCCTACCTGAGTATAGCGTGCATTTTCGGGTACATCCTGAGCTTTGGAACAGGACCAGCTGGAGTGACAGGAATGATGCCCACAGAGATCTTCGAGCAGACTGCCCGTCCAGCGGCTTACATGACGGCCGGCTCCTTGATCTTTCCAGGACCAAGGGCAAGAATCACTGACCTTGagaaatgttttccaaatggTCCACGGGTCTCACTGAAAGGACTGggtgtgttctgctttttgccTTTCTTTGTCGTCTGCGTTGCCTCCGCTACCTACATCGGTGTCTTCATGCCGGAGACCAAAGGCAAGACATTCCTGGAGATCACCAAAGAGTTCAACAGGCACAATTTTAAAGGAACTGACCTCAGGCAGTGTCAGTATCAGCTAGGTGAGGTGTGCCAAGCCAACAATCTTTAGTCCTGGGCTTCCCTGCTGCTCGATGTTTCCTCATGTCTTCTTCGATACCCTGCCACAGTGGAATCGCCAACAGTTACTCAGTCCTGTTCACGCTTAATGCAAGATATATGAAGGCATTTAACGAGTCCTGAGTGTTCACTAGCAGGGGACCCACTTCCTTTCACACTGCGAGCTCAAACAGCACGGCTAAAGCATCCTGGTTGGGAGGACTACTCCAGCTTTCGCTTATACCGCTGTGTGTTCACAGTCGCCCGGTAAGATATGGGGGTTGCTGTTATGTCAGCATCTGAGAAAACATTGTCAAGGTTTATGCCCAACAGCACTCGGCTAATTGTTAAACACAAAATCCTACTGTCTGTGGACACCTCTTACCACAACTGCTCACCATTTGGTTTTGTTGTGCTGGTTGTTGCGGTTGCACTAGAATCTCAGGAATATATCAATGTTCATATtgattcaaaaacaaacactatgCCTTCTTTAAACATGCAGACTTTAATGAGGTTAATAAGGTTGAAATGTATCATTGCATTTTCTTAGTGGACACTTTGTTGAGTTGAGAAGTTTGAGAAGCTGGGTGTTGCTATTCATTTCTATTTCAAAACTGACTGGATCAGATCAAAGATACGCACAAATAACGAAAAAATTCCACTCCCCAGTTCACCATCTCCTTACTAGAAACCAACGTGCTCTTGGAAAGTTCTCTGTGTGTTCCCAGTAGGGTAATTCaacaactatatatttatttgcctgCATGTTTTCTGATATCAATTCAATTAAACCAATTTGCAGATGGTTCGTGGTCCTGTTAAAACTGTATGCagcctaaaataataatttcttagaTTGAGTTAGTAAACACTCCTGTTAATGTTAACGTTGGGAAACAAATAAAGCCTTGATCTCTCCAGTTAAAGATTAATACCTCTCTGAATGAAGACATCTCCTGGTAAATGTATACTTTATTAATTcagtaaatgttatttttttactattatgTAATAGAACTGTGCCTGTTACActttgcatgtgttttgtggAGAAGACTTGATTAAACATCGGATCTGCATAGATTTCATGCATGCACTTTAGTCTGTATAATCCTAGTGTTTTACAGACCCAAACTAAAAATCATTATTGTTCGGAATCATTATTTCCGATGTTCAGCAATGATTGTAAATTAATAACCAGTCCtttatgtagttattttaaatatatttatttatgacttgcaatcattaaatgtttttaaaatgtatgtacatttacttGAACTTCACAAGAACTTTTGTTGTCCTTCATTTAGGATTGATTTGTGTCACCACaaatgttgctgctgttttgctatgcattttaataaaaaaagaattgtaaaattata

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018837 True 2732 mRNA 0.44 12 22651139 22659793

Neighbor

gene id symbol gene type direction distance location
AMCG00018838 derl3,derl2,LOC107667536,LOC107602852,LOC105014174 coding upstream 15088 22630545 ~ 22636051 (+)
AMCG00018836 NA coding upstream 23641 22604351 ~ 22627498 (+)
AMCG00018832 crkl,LOC106566436,LOC106563168 coding upstream 190722 22455239 ~ 22460417 (+)
AMCG00018833 NA coding upstream 201810 22440803 ~ 22449329 (+)
AMCG00018834 NA coding upstream 228325 22401501 ~ 22422814 (+)
AMCG00018847 NA coding downstream 25084 22684877 ~ 22692816 (+)
AMCG00018845 NA coding downstream 51899 22711692 ~ 22719425 (+)
AMCG00018848 NA coding downstream 70935 22730728 ~ 22742264 (+)
AMCG00018849 NA coding downstream 84216 22744009 ~ 22752505 (+)
AMCG00018846 NA coding downstream 103285 22763078 ~ 22766026 (+)
G119016 NA non-coding upstream 71803 22579051 ~ 22579336 (+)
G119015 LOC106927871,LOC103148411 non-coding upstream 73426 22577501 ~ 22577713 (+)
G119014 NA non-coding upstream 74179 22576722 ~ 22576960 (+)
G119013 NA non-coding upstream 75449 22575459 ~ 22575690 (+)
G119010 NA non-coding upstream 83159 22567766 ~ 22567980 (+)
G119071 NA non-coding downstream 7099 22666892 ~ 22667141 (+)
G119100 LOC106566253 non-coding downstream 105758 22765551 ~ 22861808 (+)
G119177 NA non-coding downstream 319478 22979271 ~ 22982799 (+)
G119178 NA non-coding downstream 335183 22994976 ~ 22995190 (+)
G119231 NA non-coding downstream 434773 23094566 ~ 23108600 (+)
AMCG00018820 NA other upstream 753439 21848370 ~ 21897700 (+)
G118815 NA other upstream 1461893 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1878553 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1955945 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 2047824 20601956 ~ 20603315 (+)
G119507 NA other downstream 2574289 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2806298 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3018884 25678677 ~ 25718426 (+)
G119762 NA other downstream 3800827 26460620 ~ 26461227 (+)

Expression


Co-expression Network