AMCG00018839


Basic Information

Item Value
gene id AMCG00018839
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22498019 ~ 22537319 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018839
ATGTATGGCCAGAGTGTTGTCCTCAAGGACAGCAGGGTAGACAAATTGATGAGTCAGACACCGGAAGAAAAGATCTTTGTCATCACGGCCACCTTTGCAGCCCTGACGCCAACGCTATTTCTTCTGCTGCCGATTCCCCGTCCTCTGGCTGCTGCCACTGTGGCCACAGCTGCCGCTCTCTGCTGCTCTCGCACCGTGCTCTCGAACCCTAGGCAAGGAATCTGGCGAATTCCAGTGGATGAAATCGATCGCCCAGGCAGTTTTGCATCTCATATGAACCGCTCCATTGTTCTCTTACTGGAGGTGCTGTCTCAGCTCAAGGATCACGATACTCTGCTGAAAGTCTCTTTCATGCTCCAGAGGACTCCGGACCAGGGAAAGAAATATTTGCGGGATGTGGATCGTCAAGTTCTCGCCAAGAAAGCCTTTTTCCTTACTGTGAATGTTCTGGAGGACACTCTGAACAAACTCACTGGGGTGTCAGAACAGCCACCTTCCAAAGTGTCCGCACCTTTGATGGGGGAGATGACGACGGACGTTTCCAAGAAGCCCAGTGCGGAGGACAGCAAGCGGGGGCTGCCCAAGAAGCCGGGGCTGACGGAGGGAGCCAGCCCACAGAGCTCCGACAGTGGGCCCCGAGAGCTCCCCCAGGGGCCGTCTGCGCAGGGCATGGACACCGCAGAGCAGCAGGGGGACAAACCGGAGAGGAGGGAGGTGTCAGGGGGAGAGGCGGCCAGACCCGGGGCTGACGAACCTATGGAGCTGGACGCCGGGCAGTGGGGTAGCGCTGGCAGGATGGACCCTGCCTCGAAATCCCTGGAAACGGACTTTCCAAAAGCCACCCAGGATCCGGAGCGGAAAGCCCCCGAGAGCAGCAGCAGGGACCCCGAGCTGTCCCTGGAGGAGCTCAGCATCAGCTCCAAGCAGCAACTGCTACAGCTACAGCAACTACAACAGGCCTCCGCGGCCAAGGGACAGGTGTCCGCTAGTGGGACAGAGGCTGGCATTGTGCGCAGACACAGCAGGAAAAGGAAATTGCTCGAGGATGCCGAGTCTGGGAAAACACTTCTGTTGGACGCTTACCGAGTCTGGCAGCAGGGGCAAAAAATCATGACTTACGACCTGGGCCGGATCGAGAAGATCATGTCAGAGACATACATGTTAATTAAACAGGTCGATGAAGATGCAGCTTTGGATCAAGCGGTGAAATTCTGCCAGATACACATGGCCACTGCAACACAGAAACAGTCCGCTGGCGATACACCCACCACTCCTAAACACACCAAGGAGCACCGCGAGATCTTCTTCCCCATTACGCCCACCCCCCTGCTCTCCTCCGCGACACAAGCCCCAGGGGGGGCCCAGGAAACCCCCGCCTCCCAAGACAGCGTGGTCAAACTGAGCTCCGAGCAGCCGCCCAAACCGCAGAAGCAACCGCCAGCCTCCTCCTACTGCCCCCCAGCTAGCACACAGGACCAGGCCCAGATGACGAGGCAGCCCCCGGCCCCAGCCATGGCCTATCTCCCTCAGACTGACCAGCCGGATGAGCCTCTGGAGGGGCTGGGCTACCGGCAGCAGGAGTCCCACTTGTGCCAGCAGATGAAGATGGCGAGTGTGTCCCCTGGGCAGGATCCGGCAGGCTGGCACTCCGAGAGCGCCTTCAGCCAGCAGGAGGCCTTGGGCGACCCCTCACACTCGGTCTGCCAAGCCACGTCTCTGAGCTCGTCCCCCGACCCGCTCTCCCCTGGCGGCCAACAGAGCAAACAGCTGGACAGCAGCCGCATCCGATCCCGCATCCCACCCAACATGCCAAAGCTCTTCATCCCCTCCACCGTGACCAAGTTCCCCCCGGAGATCACCGTCACCCCGCCCACCCCCACCCTGCTCTCCCCGAAGGGCAGCATCTCAGAGGAGACGAAGCAGAAACTAAAGAGTGCCATCCTGTCTTCGCAGTCGGCGGCCAACGTGAAGAAGGAGACGCTGTGCCAGCCAGCGCTGGAGGTGCAGGAGACGTCGAGCCAGGAGTCATCCCTGGAGAGCGACACGGACGAGGAGGACGACTACATGGACATCTGAGCGGCCGGCCCTCACCTCGCCATGCCCAGCGTCTGCTCCCCTCCCCTCAGATCTGCTGGGAGACGATATTGCGCCACTCACCTAGTGCAAAAAAGACATGTGTGTTAAAGATGAATCTGTGAAAACCAGCAGTCCCACCATGCTGCCCACCTCTCTGCCCTCTTTTCCTCTCGGTCTTGGCATCGGGGGCCCCAACCATGAAAAGAAAGTTCTGTTGGTGTAATTACAGACCGATCTCTGGCCttctggttttgtttgattCCATGTTCACCTTAAACCTCTTCTGGAAATGGAAGCTTATTGATTTGtgttctttgtttgtgtgaagCTCATCGCTCAGATAGTTTTATTTACACAGATGTCTAAGTATTGTAAGTCATGCCAGGGATTGAGAGCTTTATTTCTCCAAGATGATATCATACCCTTCTCTGTGGGCAATCCACCCagaaggtttttttgttttgttttgttttattttatttttctgactgACACTTCACAGTAAAGATTCAAGGTGGGAATATTATAAAATCTAAATGTGCCATTACTCTATCATGGAAATTGTTGAATTAAGCTCAAGTTCGAGAGTAATTTAAGGATGCAAAGCATTGCCTCAATCCAAACTATGCAGATCCCATTTCAACTGCAGTGCAAGTGTATGGTCTCTTTGGATCTGTTTGTTAAACTAAATGATACAATTTATGCATCTCAAGCAGGACAAGAAACAATAGAGAGTATTAGAGGACTCTACTCTACCTGCCTCTCTGCTTTAGTGCAGGTGGGCAGGGGTGCTGACCTTCAGTCTGTGCTATGTGCCAATCACACATTTCTAGGCTTTTTCCTAATAACAAAGGGGAATCATTCTGAGATATAGTTTAatggagtgtttttgtttttattttacttgaaagTAAACCATGCTGAAAAGGAACTGAGGGAATGGTGGCATTACCTTACAGTCTGCTGAACAGTCTTTTGGACTGGGCTCAGATACGACAATGGGTATTTTACCATTTCATCATCATGTAATATTGAGAACCTGCTTCCATGCTAGAACTGTCCAATCAAGAATCCACATACTGGCAATGAGATCATGTGATGATGTGTGGTTTAAAAGATTTACATTGTTTGTATATTATGTGTAATGAGCAGTTGTGTCCTTCAGACTATTACTTTGAGAGTTACAACTGCAAAACCGCATCAGTGGCTCCCTGACGGGTTTTAACTTTGAGGAGAATGCATCACAGAACGGCGAGGGCTGCGGTCAGCAGTGCAGAGATCAGGTGGCCGTGGGTGGGGAGCTTATAACGTTACAGTAACAGGAGAGGGAGTTCCTGTAAGACATACAGAGCAAATTTCAATGGCCAGTTTCCAAATGGCATATCTTTTGGGTACAAAAATTTCCCTTTTGGAGTATTTTTGCAATcacagtatttaaacattttactcgGGCTGTATACATTTACTGACTAAAACAGGATAAATGTTTGGGCTTTTATTTGTCCTGTTTTGTTCAAACTTTTTCATTCCCTTATTTCCAATGGGTATTTTCTTTGgagtgtaaattaaaatgtatctttaaaggACTAACTAAACATTGAAGACACAGGAATGTTTTTATACAGATTGTTTTCTATAAGGAGATGGATATTTGCAGTATTTGTATGGAAAATACTGggggggtatttttttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018839 True 3784 mRNA 0.51 10 22498019 22537319

Neighbor

gene id symbol gene type direction distance location
AMCG00018840 NA coding downstream 10307 22481139 ~ 22487712 (-)
AMCG00018835 med15 coding downstream 59665 22423406 ~ 22438354 (-)
AMCG00018831 NA coding downstream 205172 22291981 ~ 22292847 (-)
AMCG00018830 NA coding downstream 274319 22176958 ~ 22223700 (-)
AMCG00018824 fzd10,LOC108441898,LOC103024082,LOC107669258,LOC107659609,LOC107574912 coding downstream 543071 21953234 ~ 21954948 (-)
AMCG00018841 NA coding upstream 23702 22561021 ~ 22582839 (-)
AMCG00018842 NA coding upstream 46848 22584167 ~ 22586036 (-)
AMCG00018843 NA coding upstream 51233 22588552 ~ 22590324 (-)
AMCG00018844 smarcb1,LOC107661349 coding upstream 100374 22637693 ~ 22645367 (-)
AMCG00018856 NA coding upstream 216648 22753967 ~ 22760428 (-)
G118947 NA non-coding downstream 344305 22151354 ~ 22153714 (-)
G118892 NA non-coding downstream 779216 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 795971 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 816462 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 881526 21594994 ~ 21616493 (-)
G119048 NA non-coding upstream 90226 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 126514 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 129610 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 225041 22762360 ~ 22766026 (-)
G119129 NA non-coding upstream 297440 22834759 ~ 22857679 (-)
G118936 NA other downstream 384324 22080464 ~ 22113695 (-)
G118727 NA other downstream 1800192 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1808097 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1819582 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1891276 20603495 ~ 20606743 (-)
G119144 NA other upstream 267026 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2538079 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2597452 25134771 ~ 25171644 (-)
G119545 NA other upstream 2648888 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3914405 26451724 ~ 26485315 (-)

Expression


Co-expression Network