AMCG00018841


Basic Information

Item Value
gene id AMCG00018841
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22561021 ~ 22582839 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018841
ATCCGAATCGCAGCTCTAAACGCGGCTTCGACCGCGGGGGATGAGCAGGAGGATTCTCTGAAAAGCCACAAGACCCAGACTAAGGAGGCCCAGGAAGCAGAGGCATTTTCCTTGTACCACAAAGCCCTGGATCTCCAGAAACATGACCAATTTGAGGACTCTGCAAAGGCCTACCATGAACTGTTGGAAACTCCACTACTCAAAGAGGCGATTCCCTCAGAAGATGAGAACGTAGGGCTGAAGCACCCGGGACTGATGCTGAAATACTCCACCTACAAAAACCTGGCCAACCTGGCCGCCCTGCGCGATGACCAGGAGACTGCCATGGATTTCTACCTGGAGGCTGTACTGCTGGACTCCACCGATGTCAATATGTGGTATAAGATCGGTCAGGTGGCTTTGAGGCTGCTGCGGATCCCATTGGCACGGCACGCCTTTGAGGAGGGCCTGCGCTGCAACCCAGACCACTGGCCCTGTCTGGACAACCTCATCACAGTGCTCTACACGCTGAGCGACTACAGCTGCTGCCTGTATTTTATCTGCAAAGCCCTGGAGAAAGATCGCTGCTTCACTAAAGGCTTGGTTCTGAAGGAGAGGATCTTCAAGGAGCAGCCCTGTCTGAGGAAAGACTCCTTCCGAATGTTCCTGAAATGTGACATGTCTGTCCATGACGTGGAGGTGGAGGGGGCCGAGGCTCAGGCCATAGTGGAGGAAGCCCTGGAGCTACGAAGGAGGCGGCAGGCGCTGTGCAGCCGAGAACCACCCCCTGACCTCCAGCTCATACAGCCCATCCCTTACTTCACTTGGAAGTGTCTTGGGGAGAGCCTGCTGGCCATGTACAGACACCAGACCACCTGTGAGCCTCCACGGCCCAGCCTGGGCAGGAGGATTGACCTGTCAGAGTACCGGGACCCAAGTCGCCTCCAGGCTTCCCCTCATGCTTTTGCTCCTGTCAGTGTGATCCAGACCATCCCCAGCAACACCAACACCTCCCTGCCCATCACAGAGCTCCCCCCTCTCACTCAGCCCACCACCCTGGCGCAGATTGCCCAGAATCAGAACGTGGTAGAAGTCACCACATCCATAGCTGGAGATTCATGTTTGTCTGACAAAGTGAAGAAAGCCCCAAAGAGGAAGAGAGTGATTGAAGATAGTGGTGAGACAGCCAAGCGCCGTTCAGCTCGTGTCAGGAACACCAAGTGcaagaaagaggagaaaatTGACTTCCAGGAGCTGTTACTGAAGTTTCTTCCATCCAGGTTAAAGAAGCTGGACCCAGAGGATGATGAGGAGAGCCTGAGTAACTATGAGATCCAGTCTGAGGTCAAGGAAGACAACCAGCAGCTCATGGGGTCTCATTGTATGTCTTTCGACTCCACAGTTTTCATGGAATCAGAAAGGCACGATGTTCACACCTTTCTCCTCAACAATATGTCCAACGGTGGAATCCTGGAGCTGATGATGCGATTCCTGAAGGCCATTGGTCAGAAGTTTCTGGAGGAGTGGCCACCTGAGCTGGTAGCCGTGGTGTTGGAGATCTATCAGAGCTGGAGGAAACACAGCATTGGCCTGCCCAATCCCCTGTTGCGGGACTGCAGCAACCAGCACATCAAGGACATGATGGTGATGAGTCTGTCCTGTATGGAGCTCCAGCTGGAACAGTGGTCACCAACCAAGGGCAAGAATTCCACAGTGTCTCCCCGTAAGTGCCCAGCTGCTCAAAGTGGGGACCAAGGTGGCTTAGATTTTCCAGGGCAGTTTTTCCAGGGGGACCTGATGCAGCTGGCCTTCACCTCCTCCCAGAAGGACCTGTTTGACAATGACTGGCTCCCCTTTGTAGTTAGAGTGTACTGGCTCAAGGCTCGCTTCCTGGCACTGCAGGGGGATATGGACCAGGCTTTGGAAAGCTATGACATCTGTACTGGGATGCTGCAGAGTCAGGCAGCACTACAGGCTGGGagcaaagagggagagaagtaCACCATTCACCTGCCCAACCTGCGAATGGATTCGGCCATCTCTGTGGAAGAGATCGACAAGAAGCTGAAGTCTCTGGAGCGCTGCCAGTCCCTGGAGGAGATCCAGCGGCTGTTCGAGTCGGGAGACTATGAGACGGTGGTGCAGCTCCTGCGGCCCACCCTCAGCAGCGGCGGGGCTGGCCGGGTCAAGGCCCTGGAGTTCGTGACCTCGGTGCCAGAAAGACCTGCACAGCTGCTCCTGCTCCAGAACTCCCTGTTGCAGCAGGAGGATTTCCGCCAGTGCCTGGAGTGCTCTGAGGTGTCGCTCAATGAGGCCTTCCAGCAGATGAACAATGTCTCCACACCCTCCGCCAAGGACGAGTGGGTGACGACGGTGACGCAGCTGCTGCTGGGAGTGGAGCTGTGCCTGTCCCAGGACCCCGACATCCTCCACACCTCTGCCCGCTCTGCCAGCATGGCACGCCTCACCAGCAACCTCATCCAGCTGATAGACTGCAGCATGGCAGTTTCCGAAGACCCGAAGGAGCCCTGCATGTCGTCTGTGCTGCCCTGGATCATCCTACACCGCATCATCAAGCAGGAAGAGGCGGCCTTCCATTGCATGCGCAAACAGCATCTgcagggggaggaagaggaggACGACCCAGACACCCCCATGCTGCCCTCCTCTCTGATGCTGCTCAACACGGCTCACGAGTACCTGGGCAGACGGTCCTGGTGCTGCAACTCCGATGGTGCGCTCCTGAAATTCTACGTGGAGTTGCTCTGGAATGACGCGCTGTTTATGTTCGAGTACTTCAAGCCCAAAACCCTGCCCGAGTTCGACAGCTACAAGACCAGCACCGTCTCCGCAGACCTGGCCAACCTGCTGAAGAGGATTTCCTGCATCGTCCCCTGCAGTGACAAGCCCACCCTGACCATGGACGAGGTGTCGGCCTACATCGAGGGCGTGTCGCACAAGGTGCCTTGTCTCCCTGATGGAGCAGGACCAGCGCCCCCAGTGGTGAATGAGCTATACTACCTTTTAGCTGACTATCACTTCAAGAACAAGGAGCAGTCCAAAGCCATTAAATTCTACATGCATGACATCTGTGTGTGTCCGGACAGGTTTGATTCCTGGGCCGGCATGGCTCTAGCCAGAGCCAGCCGCATCCAggacaagctgaactccaatgAGCTGAAGAGTGACGGTCCCATCTGGAAACACTCCATGTCAGTGCTCAACTGCTTCAAGCGCGCTCTGGAGATCGATGGCTCCAATCTGTCTCTGTGGATCGAGTACGGCACTATGTCCTACGCGCTGCACTCCTTCGCATCACGGCAGCTCAAGCAGTTCAAGACTGAGCTGCCCTCGGAGGTGATCAAACAGATGGAGGAGCGCCGAGACACAATGCTGGAGACGGCCTTCCAGTGCTTCCAGAGGGCGGCCCGCTGCGAGGGGGATGGAGACGAGGAGGAGTGGCTCATACACTATATGCTGGGGAAGATCTCGGAGAAACGCAGGCAGTCGCCCCATGAATACCTGCTGCTTTACAAACAGGCAGCTCACTACCTGCACGAGGAGGCTGCTCGGTATCCACGCAAGATCCATTACCACAACCCCCCGGAGCTGGCAATGGAGGCGCTGGAGTTACACTTCAGGCTCAGCGCCTCCATCCTGAAGCTGCTGGAGGCTGGGGAGCAGGACCTGGACCACCAGATGCTCTTCAACATCATGCAGGAGGCGGCGGATGGGCCCTTCGCCAGAGGGGAAGAAAAGAACATGCCTAAAGCCAGTGAGAAGGAGAAGCCTCCGTCTGTGATTGATGAGGACTCACACTCCTCCATGGGCACGGCGCAGGGTCCCGGGacctccctcccctccactGGGCCAGGTCTGACATCCCCACCTTACACAGCCACACCGGTTGACCACGATTACGTGAAACGTAAAAGCTCccgtcagcagcagcagcagcagcaggagcggCAGGAGCgccagcaggagcaggagcaggccCTGGCTGATGGTACAGTCCCAGTTGTAGATACTACCACTCCAGGGAGGTGA

Function

GO: NA

KEGG:

id description
K17613 CABIN1; calcineurin-binding protein cabin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018841 True 4029 mRNA 0.57 24 22561021 22582839

Neighbor

gene id symbol gene type direction distance location
AMCG00018839 NA coding downstream 23702 22498019 ~ 22537319 (-)
AMCG00018840 NA coding downstream 73309 22481139 ~ 22487712 (-)
AMCG00018835 med15 coding downstream 122667 22423406 ~ 22438354 (-)
AMCG00018831 NA coding downstream 268174 22291981 ~ 22292847 (-)
AMCG00018830 NA coding downstream 337321 22176958 ~ 22223700 (-)
AMCG00018842 NA coding upstream 1328 22584167 ~ 22586036 (-)
AMCG00018843 NA coding upstream 5713 22588552 ~ 22590324 (-)
AMCG00018844 smarcb1,LOC107661349 coding upstream 54854 22637693 ~ 22645367 (-)
AMCG00018856 NA coding upstream 171128 22753967 ~ 22760428 (-)
AMCG00018861 NA coding upstream 184622 22767461 ~ 22768061 (-)
G118947 NA non-coding downstream 407307 22151354 ~ 22153714 (-)
G118892 NA non-coding downstream 842218 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 858973 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 879464 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 944528 21594994 ~ 21616493 (-)
G119048 NA non-coding upstream 44706 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 80994 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 84090 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 179521 22762360 ~ 22766026 (-)
G119129 NA non-coding upstream 251920 22834759 ~ 22857679 (-)
G118936 NA other downstream 447326 22080464 ~ 22113695 (-)
G118727 NA other downstream 1863194 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1871099 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1882584 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1954278 20603495 ~ 20606743 (-)
G119144 NA other upstream 221506 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2492559 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2551932 25134771 ~ 25171644 (-)
G119545 NA other upstream 2603368 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3868885 26451724 ~ 26485315 (-)

Expression


Co-expression Network