AMCG00018842


Basic Information

Item Value
gene id AMCG00018842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22584167 ~ 22586036 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018842
ATGTCTACTCTTTTTTTGGGTTCACAACAGAGGATGAACTTGACGGTGAGGTCAGGGCTGGCCATGCTGATGGGCGGCTCCACGGCCCCCTGTGTGCAGGTGGTTGTCTCTGCCATCGCAGTGCTGGACACCGCAGAGAAGAACAAGGAGCACAGCGCCAAGATCTTCCAGTTCCTCACCCAGGAGCTGGGACTCGGGGAAGACCGGATTGTCCTCCGATTCTTCCCCCTGGAGCCCTGGCAGGTGGGCAAGAAAGGGACTGTGATGTCCTTCCTGTAAACACAGGGGATATCAGCAACCGAGCCATGCACCCAACCCTGAACTACACTGCAGAGAGCCACCCAGGATGGCTTTCCAATACACCATGGTCActtaatgtgtgtgttaaatgAACCCATTGGATGAGAATTGCATTGCCTTATATACTCCATAGATCCCTATTAAACCAGTGAAATTGAACTGTACTAAGATGCAGGGGATGAGTTCCTGTGTATTAGTTCGCTGCTGAGAAATAGTGCCCTGAGATTTGAATGAGGATACTGGTGCCCAGAGTGAAATCAGTATATGCACAACACCTTCTTGAAAAGAGGTTGTGCAAATAATGGACTGGGTTGGTGACATAATGTTGGATTCTCCATTCTGTTAATTTCTCTTTACCATCTCATTGATCTGCGTTTCTAAAATTGTTTAGGTCACTAATGTCTAGGTTGGATACAATCCTTAGATCTTGTATCTGATATTCTGTATGATCTGTATGatatccttttttaaatatagattaatCTCAAACAAAAATCTGTGTTGATATGTCACAATGTCATTTAATCAAGTTGTGCCTCCGAACTTTCCCTGATATTTATCGCCAAAAAGAACGTCTAGATAATGATTTCTAATGGTTATGAGTATTCAATAACACAGCTTTGCGTGTTCACGGCTCTTTTGGTTCACAATAAATGTTCAATCAGGTGAGATTCTATATTCTTACATGTATGTAAGTTAAATGAATTCCCTCCATATACCTGTGACCTAGGTATTGCTTAGCAATTGAGCAGATGAGAGGATCCCATGAAAATTAATCACAGTATTGTCTTGTCTTAACAACACAGCAGTAAAAATCTATACTTTGTCAACAACAATGGGACCAATTGTTGTGGCACAAAAGCAATAAAGTTTAAAAGCAACCAGTAGTCCTCAGCTGTCATTATACTTGCAcctacacacatatacacacctATCCCCAcatatagttttgtttaatgtagtTAATCTGAATGTGATTTTTACCCCACGATGCTCATgaataaaatgatatataaaacaattcacACCTTGTAAATATTCTTTATGTTCAATATTAACACGATATGAGTGTAATATTTAAACCTGGCATAGACatgtaatgtgattttttgTGACATAACCCAAGCACAATTGCTGCATATGTATCAACggtttaattatttgaatggctTTGCGTAGA

Function

GO: NA

KEGG:

id description
K10028 DDT; D-dopachrome decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018842 True 1480 mRNA 0.40 2 22584167 22586036

Neighbor

gene id symbol gene type direction distance location
AMCG00018841 NA coding downstream 1328 22561021 ~ 22582839 (-)
AMCG00018839 NA coding downstream 46848 22498019 ~ 22537319 (-)
AMCG00018840 NA coding downstream 96455 22481139 ~ 22487712 (-)
AMCG00018835 med15 coding downstream 145813 22423406 ~ 22438354 (-)
AMCG00018831 NA coding downstream 291320 22291981 ~ 22292847 (-)
AMCG00018843 NA coding upstream 2516 22588552 ~ 22590324 (-)
AMCG00018844 smarcb1,LOC107661349 coding upstream 51657 22637693 ~ 22645367 (-)
AMCG00018856 NA coding upstream 167931 22753967 ~ 22760428 (-)
AMCG00018861 NA coding upstream 181425 22767461 ~ 22768061 (-)
AMCG00018859 NA coding upstream 185400 22771436 ~ 22790973 (-)
G118947 NA non-coding downstream 430453 22151354 ~ 22153714 (-)
G118892 NA non-coding downstream 865364 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 882119 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 902610 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 967674 21594994 ~ 21616493 (-)
G119048 NA non-coding upstream 41509 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 77797 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 80893 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 176324 22762360 ~ 22766026 (-)
G119129 NA non-coding upstream 248723 22834759 ~ 22857679 (-)
G118936 NA other downstream 470472 22080464 ~ 22113695 (-)
G118727 NA other downstream 1886340 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1894245 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1905730 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1977424 20603495 ~ 20606743 (-)
G119144 NA other upstream 218309 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2489362 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2548735 25134771 ~ 25171644 (-)
G119545 NA other upstream 2600171 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3865688 26451724 ~ 26485315 (-)

Expression


Co-expression Network