AMCG00018847


Basic Information

Item Value
gene id AMCG00018847
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22684877 ~ 22692816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018847
atcaaatttaaaaataagccCTGCTCAGCAAAGATACCTAACAGAGTGTGACAGTGACAGGGAGACAGATACATGGTTTGCTCTCCTCCACCCCTTTCTTCAGATTCAGACTATATAACCACTTGCATGCATCTTGAAACAATTCCCTCTACAATCATTCCTGAAGACAGACAGCCGGTGAAGACAATGGAAGCCACATTGACTGAGCTGATGAATTACTGGAGGCTTATTCTGTTAACTGTCGTGCTAGGAATCGGGGGATCATTTCAATATGGAATTCAAGTGTCTATCATGGCTTCTCCCTCAGAACACATTCAAAACTTTGTGAACCAGACTTGGATGACTCGGTATGAGAAGCCTGTCAGCGAATCCACACAGAAACTCATCTGGTCCTTCATTGTGTCCATCTTCAGCCTGGGGGGCTGGCTGGGTGCTATCAACAGTGGTACAATCCCAGTCATCTACGGCAGAAAGAAATGTCTGCTCTTCAATAACGTGGTGGCGATCGTGGCCGCAGTGCTGATGGGATTCAGTCGCATGGCGGGCTCCTTCGAGATGATATTGCTGGGAAGGATTCTAGAATTGATGGGCACAGAACCTATGTGGCCATACCTGCTGGCACTGAGTGGTCTGCCAGCTGTGGTGCAATTCCTCAGCCTCCTCTGTTTCCCAGAAACACCGCGCTACCTGTACATTGACAAGGGGGATGAGGAGGGATGTAAAAAGGctttaaaggtGCTCTGGGGTAACGTGGAGACGAAGCCGGAGCTGGAGGATATGGCTAAAGAGCGGGAAACGATGAAAGGGGAAAAGGCCAAGTCAGTGTGGGATGTCCTGACATCACGCTCTGTGCGATGGCAGCTGCTGACATTAGTCATCCCCTGTGGTCTTGTCCAGCTCTGTGGAATCAGTGCGTCGTTCCTGATCGATCGCACTGGCAGGAAGTGGCTGATGTCGTTCGGCTACCTTGCCATGGCAGTGCTGATGGGGATTCTTGTGGTGATGCTGTCTTTAAAGgaTAAATACACCTGGATTCCATTCTTCAACATTGCTCTCATTTTCTCTGCAATCTGTGTTTTTGGACTGGGTCCTGctgGAGTGGTGATGACCCTCCCTGCTGATTTGTTCCTTCAGGCTTGGAGACCCTCTGCGTACGTCATTAGTGGCACATGTAACTGGGTCGGTCTGTTCCTCATTGGGATGTTCTTCCCTTATGTAGCGGATGCGATGGGCCAGTTCTGCTTCCTGATCTTTGTGGCCTACTGTGTTCTCAGTGCAGTGTTCATGCTGGTGTTCATTCCTGAAACCAAAGGCAAGACCATGGTAGAAATTATGGAGGACTTCAACAAGCTCAATTTTAAGGGCAgggaggtggacacagagaaaGCAGATTTGGTCCTCGCCACCAAGCTTTGAGAACATCcaacattattattcattattctgttttcttctcCATACAGggctaaattaaatgttttttgtcagGGTGTGAATTCCTAAGACTTGTTTAAACATGCATGTACtgatttgtgaaaatgtaaaacctttATCAGTACTGGGAAATCTATTGTAAGCACTTTATGTTGTAGTAATATGCTGTATATGCTGAATATAACTAgacatgctttttgtttgtgaCAGTTTTCTTGACTGTGATTACTGTATTCATCTTTCTTCAGccaagagatttatttttgaatgactGAAAATGAAAGGGACTGAAAATAAGAACTATGCATTTTTATCAGAATATATATCaaagatgttttattattaaaatacatatctgatttgaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018847 True 1800 mRNA 0.45 10 22684877 22692816

Neighbor

gene id symbol gene type direction distance location
AMCG00018837 NA coding upstream 25084 22651139 ~ 22659793 (+)
AMCG00018838 derl3,derl2,LOC107667536,LOC107602852,LOC105014174 coding upstream 48826 22630545 ~ 22636051 (+)
AMCG00018836 NA coding upstream 57379 22604351 ~ 22627498 (+)
AMCG00018832 crkl,LOC106566436,LOC106563168 coding upstream 224460 22455239 ~ 22460417 (+)
AMCG00018833 NA coding upstream 235548 22440803 ~ 22449329 (+)
AMCG00018845 NA coding downstream 18876 22711692 ~ 22719425 (+)
AMCG00018848 NA coding downstream 37912 22730728 ~ 22742264 (+)
AMCG00018849 NA coding downstream 51193 22744009 ~ 22752505 (+)
AMCG00018846 NA coding downstream 70262 22763078 ~ 22766026 (+)
AMCG00018851 NA coding downstream 99461 22792277 ~ 22798365 (+)
G119071 NA non-coding upstream 17736 22666892 ~ 22667141 (+)
G119016 NA non-coding upstream 105541 22579051 ~ 22579336 (+)
G119015 LOC106927871,LOC103148411 non-coding upstream 107164 22577501 ~ 22577713 (+)
G119014 NA non-coding upstream 107917 22576722 ~ 22576960 (+)
G119013 NA non-coding upstream 109187 22575459 ~ 22575690 (+)
G119100 LOC106566253 non-coding downstream 72735 22765551 ~ 22861808 (+)
G119177 NA non-coding downstream 286455 22979271 ~ 22982799 (+)
G119178 NA non-coding downstream 302160 22994976 ~ 22995190 (+)
G119231 NA non-coding downstream 401750 23094566 ~ 23108600 (+)
G119234 NA non-coding downstream 416785 23109601 ~ 23111520 (+)
AMCG00018820 NA other upstream 787177 21848370 ~ 21897700 (+)
G118815 NA other upstream 1495631 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1912291 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1989683 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 2081562 20601956 ~ 20603315 (+)
G119507 NA other downstream 2541266 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2773275 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 2985861 25678677 ~ 25718426 (+)
G119762 NA other downstream 3767804 26460620 ~ 26461227 (+)

Expression


Co-expression Network