AMCG00018856


Basic Information

Item Value
gene id AMCG00018856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22753967 ~ 22760428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018856
CTCCACTCCTCTCCACAGCCCCATCCGTGCGCTCTGTCCGACGTCATCAGCGTCACATTTACGTCGCCCCATATCCGCTGACGTCAGTTGTGTACCGTCCGTTGCAGTTTGTTGGCGGGATGTTTAAATTTGCGGACGGGAATAGCAAAGAAAAGCTTGTTGTCTAGTTTTGTGACAGAGCGTGTGTTTGAGGCGCAGGAAGATGAGTCGCGCATCGAGCAGCCGGCAGTCGCTGCTGCCGCTCAGGGTAGCTGACAATGCCCGGATGAACCTGGAAACCCCAAAAAGGACAAGCGGTGCAGGTATGTCCCGTAACAGCACTTTTGGCGCTTTTGGAGGCGCAGAGAAAATGAAGGACCCTCGTCCTCTGCATGACAAGGCCTTTGTCCAGCAGTGCATAAAGCAGCTTTGGGAGTTTTTGTCAGAGAATGGTTTCCCCAACTCTGTGACGATCAAGTCCCTTCAGTCTCCATCCACCAAGGAGTTCCTGAAGATCTTCGCCTTCATCTACAGCTTCTTGGATCCGACTTTCCAGATGCCCACGTCCAAAATTGAAGAAGAGGTTCCCCGAGTTCTTCGAGATTTGGGATATCCATTTGCTCTCTCTAAAAGCTCAATGTACTCCGTTGGAGCACCACACACTTGGCCACAAATACTGGGGTCACTGATCTGGTTAATAGACAATGTAAAGCTCTTTAATAACATGAAGAAGCAAGATTTGCTGTTTGGTGGTTTTTCTGAAGGTAGTGTGGACATTGAGGATGGAGTTGAATTTAATAAGATGTTCATGGAGTACACAGCGAAGACATATGACCGGTTCATGCAAGGCGCCGACACGTTTGAAGAGGAAGATGAGGAATATCGTCAGAAAATAAaaaagatttacaatgtggatgaaagCCACTTGGAAGCAGTGTCTGAAAAACACAGGATTCTGTGTGAAGAGGTCGAAAGACTGGAAAAAGAGAGCCAACAggaCAGACTTATGGCAAAAAGATCTGAAAAATTAAAGTTGCAGACAGATCTGCAGAAAATTCAGAGTTATCGTAATAATCTGGAGATCTTTAAAACCAACTTGGAGCAAAAAGTGGCGTCTGTATCTGAGGAGTTGGAAGGGGCAGAATTGCAAGTGGAAACTTTGAAAAAAGAACAATCCAGGCTGCAGCATGTCCTTGAGAATCAGAAATTTTCACAAGCTGACATTGAGAGAATCAATCATGAAAGAAATGAACTACAGCAGATGATTGCCACCCTGACGAAGAGCCGGGAAGAAGCCGAGCAGCACATGTGGAATGAGGAAATTGCCCTTGCAAAGGCCAAGGAATCTGTGGAAGCAGAACTAGCAGAGTACCACAGACTTGCCCGGAAACTAAAGCTGATTCCTTCATCAGCTTCAAATGCCTGTGGCCGTGACTTTGAAATCAAATTTTCTGCAGAGTGTGGACTATCAAAAATAGGTCAAAACAAAACTCATATTCATattccCCTGATGAATATGATTTCTGAAGTAGAGGAGGAGTTGGGAAGACTGACAAACCATAAATTAAGTCTGGAGGAGACCGTGGAACAGGTGAACTGCAATCTATTTGACAAAGCAAATGATATAAAGCAACTCAAAGAGAAAATACGAAAAGAGACAGAGCGAGAAGAGGAGAAATGGGCCTCGGAGCTGGAGTCAATGGAGGACCACAGGAAGCGTCTGCAGAAGAAAGTCACTGAGGGCTACGATGAGGCAGCAGAGCAGTTAAAAGCAGCTCAGCAAGAGTACCATCTAGTATTACAGGAGACTAATGAGGAGCGCAGAACTGTGGGGACAAACCTGAGTAATGTTTTGGACATCGCAACCAACCACCTGTCAATCCTGGATAAACTCCTTCAAGAGCACAGCAGTAGGGTTGACCGAGACTATAGGGAAACTATCCAGGAAGATGAGCTGAAGGATCTTATGGAGACTGTTGAAGCATACATTGCAAAAGCAAAATCTTTATAATTCTGCCATAAGCAGCGGTATTCCCTGTCATttaagtctgtgtgtgtttgcagtacTTTGCATTGTTGTATTTTCCTTGTTTCAATAAAGAACTTTGAAATGTTGTATATAGTTGGATACTGGGAGTAACATGCAGATTGTAAATGCTATTTACACAGGTGCAAATTTTTGTCCATGACTACATTGAAAGCCTATTCCAATTAACCAAacgttatttatttcttagcagacacccttgtccaatAGTTGCTCTGGATATCACCCAAGACTGTTACTGAACAGTTCGTGTAGCATTCCTCCAGACCTCGTTGCTAGAGGTGGGGCATAATTCCAGCTGGCGGGCAG

Function

GO: NA

KEGG:

id description
K11547 NDC80, HEC1, TID3; kinetochore protein NDC80

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018856 True 2335 mRNA 0.45 16 22753967 22760428

Neighbor

gene id symbol gene type direction distance location
AMCG00018844 smarcb1,LOC107661349 coding downstream 108600 22637693 ~ 22645367 (-)
AMCG00018843 NA coding downstream 163643 22588552 ~ 22590324 (-)
AMCG00018842 NA coding downstream 167931 22584167 ~ 22586036 (-)
AMCG00018841 NA coding downstream 171128 22561021 ~ 22582839 (-)
AMCG00018839 NA coding downstream 216648 22498019 ~ 22537319 (-)
AMCG00018861 NA coding upstream 7033 22767461 ~ 22768061 (-)
AMCG00018859 NA coding upstream 11008 22771436 ~ 22790973 (-)
AMCG00018860 NA coding upstream 49057 22809485 ~ 22821646 (-)
AMCG00018857 NA coding upstream 79104 22839532 ~ 22850722 (-)
AMCG00018855 snrpd3,LOC105014836 coding upstream 100663 22861091 ~ 22862779 (-)
G119072 NA non-coding downstream 86757 22666929 ~ 22667210 (-)
G119070 NA non-coding downstream 89868 22663833 ~ 22664099 (-)
G119048 NA non-coding downstream 123842 22627545 ~ 22630125 (-)
G118947 NA non-coding downstream 600253 22151354 ~ 22153714 (-)
G118892 NA non-coding downstream 1035164 21703302 ~ 21718803 (-)
G119128 NA non-coding upstream 1932 22762360 ~ 22766026 (-)
G119129 NA non-coding upstream 74331 22834759 ~ 22857679 (-)
G119180 NA non-coding upstream 222438 22982866 ~ 22983566 (-)
G119181 NA non-coding upstream 223756 22984184 ~ 22984772 (-)
G119235 NA non-coding upstream 349173 23109601 ~ 23111520 (-)
G118936 NA other downstream 640272 22080464 ~ 22113695 (-)
G118727 NA other downstream 2056140 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 2064045 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 2075530 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 2147224 20603495 ~ 20606743 (-)
G119144 NA other upstream 43917 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2314970 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2374343 25134771 ~ 25171644 (-)
G119545 NA other upstream 2425779 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3691296 26451724 ~ 26485315 (-)

Expression


Co-expression Network