AMCG00018859


Basic Information

Item Value
gene id AMCG00018859
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22771436 ~ 22790973 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018859
GAAGAGTCTGCGGCGGGCAATGCCGAGTCGGCACCACTGTACTGGAAAACAGATAATCAAACTGTTCACCAGGCTGATGGCAGCAGGTCTTTTAACTTTGACAGAGTTTTTAGTGTCCATGAAACAACAGATCAAGTTTATCAAGAAGTTGCAAAGCCCCTTGTGGATTCTGCCATCAAGGGCTACAATGGTACAATCTTTGCATATGGACAGACCTCATCGGGAAAGACTTTCACAATGATGGGGAACAAGGACTCTGTGGGAGTCCTACCTCTGGCCATTCAAGACATATTCAAGACTATTTCGGTGACTTCCAACATGGAATTTCTTCTGCGTGTGTCCTATATGGAAATCTACAATGAGACGGTCACTGATCTGCTGTGTGACAGCCTCAAAAGGAAGCCATTGGAAATCCGAGAGGGCACAAATAGAAATGTTTATGTAGCTGATCTCACTGAGGAGGTGGTTGTATCTGCCAAACAAGTCCTGGAATGGATCAAAAAAGGAGAAAAAAATCGACATTACGGAGAGACCAAGATGAATCAGCGCAGTAGTCGGTCTCACACAATTTTCCGAATGATTTTGGAAAGTCGTGAAAAATGCGATACACCTGGCGCAGAACTTCAGGACATGGCGGTTATGGTGTCCCATTTGAACCTGGTTGACTTGGCTGGGAGTGAAAGAGCTAGCCAAACAGGAGCTGAAGGGCTGAGACTGAAAGAAGGGTGCAACATTAACCGGAGCTTGTTTACTTTGGGCCAAGTTATCAAAAAACTGACTGATGGGAATCCTGGGGGCTTTACAAATTACAGAGATAGTAAACTCACCAGGATTCTCCAAAACTCCCTCGGTGGCAATGCCAAAACAGTGATCATATGCACCATTACTCCGGCCACTATTGAGGAGACCCTTAGCACCCTTCAGTTTGCCAGCACAGCCAAACATATGAAGAACGACCCTCATGTGAACGAGGTTCTGGATGACGGCGCGCTAATGAGGAGATACAGAAACGAGATTGTGGATCTCAAGAGACGTCTCGAGGAAGTTTCCTCTGAGACACGGGTACAGGCCACCGAAAAGGAGGTTCTGGCCCAGCTGCTACAGGAGAAAGACCAGTTACAGCGAGAACAGGAGGATCGCATCAAGAACTTAACAATGATCTTGGTTACCTCCTCCAGTTTCGTAGTGAACGACATGAAGatgcGAAACAAGAGGAGAGTTACTTGGGGTGGCAAACTCCTGCGGGGTATGACGTCCGAAGGATTTAATTTCAGCGACCGTGGATTTCCAGAACATtctcttaaaagaaagaaagcagatTTATCGTCAGTAATCGAACAAGATGACTCTGAAATGTTAGATTTTGATGGAGATGACACTTGGCAGCAGACTATAGATGATCTCCCCTTGGAAATGGATTCATATATGAGCAACGTCTCTGTGCGCAGAAGCAGGAACACTCCGTCTGTCTTATCAGATGTTTCGTCTTCCTCCTCGTCTCCTTCCGATAGCGGTTTTTATTCTCTGGTTCACGTGAACGAACTGAAGGAGAAGGTGGCGAGTTTGGAGCAGCAGTTGCAGAAGGAAACCCAGGAGAAACTGGAAGCCGTAGAGAAGGGCAGCATGCTGGAGAGGAAGGTGATGGAGTTGGAAGAGCGTGTGGAGGTCACCTTTAAACCACCGGCCCAGGAGCCTGTGGATGAAGATATCCAGACAGAGACGTACAGCCAGGCAGCCTATCAGACTTATGAAACCGAGTTCAGGGAAACGATGCAGCTCTGTGAAACACTGGTGACTGAGAAGGAGGTCATCCAGGCAGAGAGGAACATCCTTAAAGAAGAATTTGACCGCTTGAGGAAGGCGAACGAGGTCTTGGAGCAGGAAAAGAAGCGTCTCCAGAATGAGATTGCAGAGAAAGAGGAGCTCAGTGAGTTCAAAACTTTTGAAGAGGAGAGCAACAAACTATATGAGACTGAATTAATGAGTGAAATCAGCAGCTTAAAGAAGGAGATTGAGAGCGCTGGCATGTGCATCGAAAATCTGAAGGCTGAGCTTGAAATGAAGTCAAATGAACTGCAGAAGAAGGAAGACTGGATTTCAGAGATGCAGAATCTGGGCGGTAAGGACTTGATGGTAGAGATCCAACAGCTAAAGCACTCCCTGGGAGACGCAGAGACTGTGAATCTTGACACTAAGAAAGAGTGGGCCTTCCTTCGCAGTGAGAACCTTGCCCTCAAGGAGAAAGATGTTGAAATCACAGCCAAGTACCAGCAGATGGAGACTGATGTGCAGAGGCTACAGAGCCAGTTAGAGTCCGAGAAGAAACGCTTCAAAACGATGCAGGTGGACCTGCAAAAAGAGCTGCAGATTGCTTTTGAAGAAAACACCAAGCTGACCACCCTCCTGGATGGAAAGGTCCCCAAAAATCTGATTGAGCGTTTTGAACTGGAACAAAAAGTTGCTGGGCTCCAAAAACAGCTGGAAAAATCCTTGGAAGGGGAAAGAACATTGCATGCAGAGATTGAGGCCCTGTCTGAGCTCAAGCACCTCCCTGAGAAGGTTGATGACTTGATGAAAAAGATCTGCGAGATTTCTAACGAGCTCTGTGCCATACAGTCTGAGAGGGATGCTCTTCTCTCCACAAAGGCAGAAATTGATGTGGAGATACGAGAGCTGACGGAGGCCAAACTGCAAGCTGCTGCCAATCTCATTGAAGTTCTCTCCAAGCTAGAGAAGACTGAGCAGAAGATGACAGACTTGTCTCAACAGCATGACTCAGCACAGAAGCAATGCCTGGCTATGTCTGAGGAGTGTGAGAAACTCAAAGCTGAGCTAGAGAACGTGTCTGCAGATAAAGAGCAACTGCTAAACAGACTGGAAGACCTAAGCTTGCAgGTTGTGAACACTGAAGAGCAGCAAAGAGTAACTGAAGAAAAGCTGTTGGAACAGGAACAGCTGCTGAAAGACTCTGAGAGCACACTCGCAGAAAGGGAGGAGGCCTCTAGGCATGAAATGACACACATTGAAGAGACTATAAAGCAACTAGAAACCCAGGTTCTCACCATTTCTGAGGAGCTGAAGGTGGTGAACAGTGAGAGGGACGCCCTCCTGTCTGACAGGAGAGACTCTGCTCAGAGTCCAGATGCTGAGCTGCAGGAGCTGCGGACACGCATCAAATCCCTCACGGAGGAGAGAGACCAGCTGCAGGAGATACTGGAGGGAGTCCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGAGAATGTGGAGATGGTTATTGAGACCCAGCAAGACATTTGCAGTGTCAAGGAGGAGCTCAAACTGCAAGAACAGCTGGTTGCTGAGCTCAAAGACCAGAGTACTGAGAGAGAAGCTCGACTGGAACACCAGATAAATGAGTTGACTGCAGAGCTGAAGGTGGTGAACAGTGAGAGGGACGTCCTCCTGTCTGAGAGGAGAGACTCTGCTCAGAGTCCAGACGCTGAGCTGCAGGAGCTGCACACACGCATCACATCACTCACGGAGGAGAGAGACCAGCTGCAGGAGATACTGGAGGGAGTTCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGATAATGTGGAGATGATAAATGAGTTGACTTCAGAGCTGAAGGTGGTGACCAGTGAGAGGGACGCCCTCCTGTCTGAGAGGAGAAACTCTGCTCAGAGTCCAGACGCTgagctgcaggagctgcagACACACATCACATCGCTCACGGAGGAGAGAGATCAGTTGCAGGAGATACTGGAGGGAGTCCGAGCCGAGAAGAACCAGCTGAAGGCCGACCTGGAGGAGAATGTGGAGATGGTTCTCGCCATTTCTGAGGAGCTGAAGATGGTGACCAGTGAGAGGGATGCCCTCCTGTCTGAGATGAGAGACTCTGCTCAGAGTCCAGATGCTGAGCTGCTGGAGCTGCGGTCACAGATCACATCCCTcatggaggagagagaccagCTGCAGGAGATACTGGAGGGAGTTCGAGCTGAGAAGAACCAGCTGAAAGCCGACCTGGAGGAGAATGTGGAGATGGCTGTGGAGACTCAAAGTGACCTTCGCTGTGCCCAAGAGGAGCTCAAAAAGCATCAGCAACTGATGTCTGACCTCAAGATCCAGAAAACAGAGCAAGAAGCTCACCTGGAGCAAAAAGTGACTGTATTGACTGAGGAGCTGAAGGTGGTGACTAGTGAGAGGGACAGCCTCCTGTCTGAGAGCAGAGACTCTGTTCAGAGTCAAGATACTGAACTACAGGAGCTGCGGACACGCATCGCATCCCTCACCCAGGAGACAGACCAGCTGAAGGAGATACTCGAGGCAGTCCGAGCTGAGAAGAACCATTTGAGGATGGATCTGGAGGAGAATGTAGAGATGATGCAGGTGAAGTTGCAACAAGCCCAGGATGAACTGAAAGAAAAGCTTCAGGAGGTTGAGGAGCTCAGAGGCCTGGTAGCAGATAAAGAACTCCAGATCAGCAGCATCCAGCAGACCCAGGCAGTGGAGGCAAGTTATATTCATGGCATGTTTACAAATCAACATGAAGAAAAGCTGAAACACGCCCAAGAGCAACTGACGGACAAGCAGCAACAGATTTCTGACCTGAGAGCCCAAGTAGCAGCGAAGGAGGCCGAGCTGTTGGGCCTGCGTCAGGAGCTCAGTCACACTGTGGCTGAACATGACCTGCAGAGGCAAGAACATGAGTCTGTGGTTCAGGAGCGGTGCCATCTGGAAGAAGAGCTGAAGGCCAAGATGGCACAGTTGCAGGAGACTGAGATCTCCCTGCAGGAGCTCAGGGGAGAGCTGGCCGGCCTCGTGCAGGAGAGGGACCAGCTTCACGAAGGCCTGAAACGACTCCAAGATGATATCAAGGCAGAAAAAATgaagagtgagagtttaatTGCTGAGGCAATCAAGGAGAAACAGGCACTTTCCGACAAGATAAGCAGCCTGAAAGAGGAGATTGTTTACCTTGAGCGTAAGTGCGAGCTCTCGGTGGGGAAGGAGAAGCTGTCTCAGCGTCTGGAGGAATCTGAACAAGAGCACCAGGAATCTCTGAAGAAGTTCCAGGTGCTGATTGACAAGTTTGATAGTCGGGCCAAGAACATCAGCACTCTGCTGAAAAAGGACGTTGGTTCACAGAACAAACTGGTGCATCAGCTCGTCTCCTCCCTGCCTCGGGATCAGTCCAAACCCATGCTGACACTCAACTCTGACATCGGGGACAAGAACAGTGAGCTTGTTTTGAGACTGAGGCAGCAGGTGAACATGGCC

Function

GO: NA

KEGG:

id description
K11498 CENPE; centromeric protein E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018859 True 5295 mRNA 0.50 37 22771436 22790973

Neighbor

gene id symbol gene type direction distance location
AMCG00018861 NA coding downstream 3375 22767461 ~ 22768061 (-)
AMCG00018856 NA coding downstream 11008 22753967 ~ 22760428 (-)
AMCG00018844 smarcb1,LOC107661349 coding downstream 126069 22637693 ~ 22645367 (-)
AMCG00018843 NA coding downstream 181112 22588552 ~ 22590324 (-)
AMCG00018842 NA coding downstream 185400 22584167 ~ 22586036 (-)
AMCG00018860 NA coding upstream 18512 22809485 ~ 22821646 (-)
AMCG00018857 NA coding upstream 48559 22839532 ~ 22850722 (-)
AMCG00018855 snrpd3,LOC105014836 coding upstream 70118 22861091 ~ 22862779 (-)
AMCG00018858 bup1,upb1 coding upstream 80186 22871159 ~ 22875760 (-)
AMCG00018863 NA coding upstream 85688 22876661 ~ 22887044 (-)
G119128 NA non-coding downstream 5410 22762360 ~ 22766026 (-)
G119072 NA non-coding downstream 104226 22666929 ~ 22667210 (-)
G119070 NA non-coding downstream 107337 22663833 ~ 22664099 (-)
G119048 NA non-coding downstream 141311 22627545 ~ 22630125 (-)
G118947 NA non-coding downstream 617722 22151354 ~ 22153714 (-)
G119129 NA non-coding upstream 43786 22834759 ~ 22857679 (-)
G119180 NA non-coding upstream 191893 22982866 ~ 22983566 (-)
G119181 NA non-coding upstream 193211 22984184 ~ 22984772 (-)
G119235 NA non-coding upstream 318628 23109601 ~ 23111520 (-)
G119382 NA non-coding upstream 1728440 24519413 ~ 24608462 (-)
G118936 NA other downstream 657741 22080464 ~ 22113695 (-)
G118727 NA other downstream 2073609 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 2081514 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 2092999 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 2164693 20603495 ~ 20606743 (-)
G119144 NA other upstream 13372 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2284425 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2343798 25134771 ~ 25171644 (-)
G119545 NA other upstream 2395234 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3660751 26451724 ~ 26485315 (-)

Expression


Co-expression Network