AMCG00018864


Basic Information

Item Value
gene id AMCG00018864
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23034369 ~ 23047483 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018864
TAAGAATTGATAGCACCGAGACAGCCAGTGGTTTTGCAGCCCGAAGGAGGCAGGCGTTTGGAGAAAGCTGCGGACCGGAGCGCACAGCGTTTGCGCCGTTTCCAAACCTGGCTCAGTGCGCCAGAGGCTCCAGGCTTGGGCAGGACACGCTTATACAGCAGTCGGGGAATTGGCACTTTCCTGGACTGTCATGCGAGAGgaacattcaatatttgtaaatctAGATCAACACATCTGGACGGGAAAGGCTGTggtggaacaaaacaaaaacctttttaaaaacaagaattgCTGCGTAAGTGCGCACTGAACGTCTCCAATGCGGCGATACATACATCTAACCAGGGAGATGGACATTTCTATTCAAAATTTAACGGCACTGGCCCATGACTGGACTGCGATTCGCCCGCTGTTCTACCTGAGCATCACAGACCTGCTGCTGGGAGTGAGCTGGCTGATAGGGGCCATTCTCTACAGAGAGCCCTTCCACAGTCAGAACATCGCCTGCTACAACCTGCAGTCCATCGGACAGgtattttatgtgTCGTCCTTTTTCTACACCATAAACTACACCTGGGTCCTGTACACTGGCTTAAAGGAGAAGTACAGCAGGAAATTAAGTGGATATTCTGCACTGTATTCGGAACAAGCCTATAGAATCAACAAAATTGCCGCAGTGCTATCAAGCGTGGTTCCTGTGCTGCTCATCGCTCCCGTTTTCTACGTTGGCAATTCAGCAGAATGCTATTGGAACTTCACGCAGCCTTACAAATGTCTGTTGATGCACACCGGGGACCTCAATCCACCCACAGGCTACAATGAATCCAACACAACGTCCTGCCACGTCCTGCACTACTACAGCACAGGGGTCTTCCTGCTCGCCTTCCTCTTCACCCTCGTAGGGATTGTGGTGCTCATGGCAAAGGCCTGCTCTCTCTACAAACGCGTTGTGAACTCCAGCGGGTTTCTGGGCGACCAGCAGTGGGCCAACATTACCGTGTTGGAGCGGCGAGTCTTCCTCTACCCTTTggccttcttcttctgctgggGCCCAGCTATTCTTCTGGCTGTAATGAAGATATTCAACCCAAGAGGACAGGAGAATCTCTATGTTGCCCTTTACATCTTACAGGCTCTCACGTCGGCCTCGCAGGGGCTGCTGAACTGCGTGGTGTATGGTTGGACACAGCAGATGTTCCACTTCATGAAGACGAGCACCCGCCGAGACATGGACACGCAGACCCCCTTACTGCGCTCGCAGAAGAAGAGCTACGCAACCCTGCACACTGCGAGCtcaagcacaagcacaagcacaagcacaagcacaagcactGCCCACTAGACTGCTACACAAGGACACCAGAGCGAGAAATTCCCAACCACATAGGTGGCCAATAAGCTTCTGGCCAAAACTTTCTAGTAGTGCTGCATGGATGAAGCAATGATAAAGCGACAGGCtgcaaaatactgtacatgtattatttcttaaGATCCTTTTCTTCCTCATTAGAAAAGGGAAACACCTGAAGATTGCGATACTCAGAGGAATTTCTGGTTTTAAAGTCAGGTGACTTTCTGAGGTCTCCTCCCTACCCGAAGCAAAGTGGAATTTTTCTGACGAGGTCATTGCCACAAGCCTGGCTTGTCTCCTTcagacagacaaagacatgtatttaattgctCATTCTAACGGCTACTTCTCTCGTTGTGTTTATtcaaaaatgtcagtgtttgaCAACAAACAAGACCCTACATATGTTTAAAGACAttgagaagggaaaaaagttttcttCAATTACTTAGGATAAATATGTCAGAACAGCTGGTTCTATACCACAAATGTGATCCACAAACTCTGATCCATTTCAATGAAATATGGAATATTTGCATTCCATCAGGAACCAGAGAGACTGCAACACTGTCCAGCTTCAGCAGTGCCTGGCCTATGAAAGAATTTGCCAAAAAACAGGTGTTTGGAGCTGCAGTGTGGGTGTATTTCTACTTCCATTCATTCACGGGACACTAGTAAAACGACATCACCTCAGACAATCACACTAAACCCTGCTAAGAAGAGGAAACCTGTGCAACTGTGCAAGTCTAAGTCAAGTGGGAAGGCTCACCCAGCGGCCTCATGGGCAAGACGTGTCACCCCCTCTCCCAGCCCTTTTCAACAGGGTGTATGTGATCAGAGAGTATGATTAAAGACCCGTAGGTGCAAGGATAATGTTTATGTGCATTGAGCTTTGTAGCTAAGCTGCTTGTTTTACTGCATTGAATGTTTTCACTTGTTTGTAGTAATGAGTGGGATATTGCCTCTTTGACAAAGGAAAAATGATTTACTTTCCTACCTAGATTTAGTACTGCACAGTTTCCAGTCTATCCACATCtatatatttcttctgtttcaTGCACAGCAGTTGAGTATATAGCAAAACTGATCTTCCATAAGAGTTTGACTGGATGATCtctatttttcttctattaaaaaagcacatttttataaGCTATACAGTTATTAATAATAGCATAGTGCCTATTGCACAGTATGTTTTAAAGGTATGTCTTTTTGCTGAATTATTTTGGAGGAACGAAAAGGGACTCTAAAACACTATGCCAGCATTTGGCCAGATGAAAGAGGGACAAACgtgatatatataaatatatataaaaatgcttttttgaactaaataaataacaaaaggaaCCTACTTTGGTCCACATTCAGTCAGCCTCAATGCCTATTTAGAGTTAAGCATAGTGCAGTTTATGGAGGTTTCATAGGTGTGTGTTTTCAGCACAGATTTGGCTGTATGTTATTCTAACTGCAATCTGCTAAAGATGTTTAGGTTGAATATCAAAATGCCAGTGATGAAGAAACAATGACAAACATCTAGGTTTTTGTTAGAATTACTGATGGTTAACAACATAAGgagatatttatgtattgtttaaattatttgtggATCATATGtaattctgtaaaaataaatagaaactgCAATACAAAAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018864 True 3009 mRNA 0.44 9 23034369 23047483

Neighbor

gene id symbol gene type direction distance location
AMCG00018866 NA coding downstream 1559 23012422 ~ 23032810 (-)
AMCG00018868 aldh2,LOC106578507,LOC107662045 coding downstream 23116 22998635 ~ 23011253 (-)
AMCG00018867 ptpn11 coding downstream 41132 22987225 ~ 22993237 (-)
AMCG00018862 NA coding downstream 106934 22899552 ~ 22927435 (-)
AMCG00018863 NA coding downstream 147325 22876661 ~ 22887044 (-)
AMCG00018865 NA coding upstream 8837 23056320 ~ 23083052 (-)
AMCG00018869 NA coding upstream 39278 23086761 ~ 23087315 (-)
AMCG00018871 NA coding upstream 775983 23823466 ~ 23827059 (-)
AMCG00018870 pitpnb,LOC106585622,LOC106580376 coding upstream 813029 23860512 ~ 23873031 (-)
AMCG00018872 pitpnb,LOC107706770,LOC108425199 coding upstream 847009 23894492 ~ 23928438 (-)
G119181 NA non-coding downstream 49597 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 50803 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 176690 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 268343 22762360 ~ 22766026 (-)
G119072 NA non-coding downstream 367159 22666929 ~ 22667210 (-)
G119235 NA non-coding upstream 62118 23109601 ~ 23111520 (-)
G119382 NA non-coding upstream 1471930 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 1518663 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 1789304 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 1997468 25044951 ~ 25045344 (-)
G119144 NA other downstream 228031 22804345 ~ 22806338 (-)
G118936 NA other downstream 920674 22080464 ~ 22113695 (-)
G118727 NA other downstream 2336542 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 2344447 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 2355932 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 2027915 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2087288 25134771 ~ 25171644 (-)
G119545 NA other upstream 2138724 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3404241 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 3730152 26777635 ~ 26797720 (-)

Expression


Co-expression Network