AMCG00018868 (aldh2,LOC106578507,LOC107662045)


Basic Information

Item Value
gene id AMCG00018868
gene name aldh2,LOC106578507,LOC107662045
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22998635 ~ 23011253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018868
ATGCTGCGCTCCGTGCTGTCCGCGATTCCGCGCCCGGCGCTCCGGCTCCCAGCCCGGGCGTACTCCGCCGCAGCTGCCATCCCCGCTCCCAACACACAGCCAGACGTCCATTTCAACAAGCTATTTATCAACAACGAGTGGCAAGATGCTGTCAGCAAAAAGACCTTTGCATCCATCAACCCATCTACAGGAGAGGTGATCTGCCAGGTAGCAGAGGCAGACAAGGCTGATGTGGATAAAGCTGTGAAAGCCGCTCGTGATGCCTTCAAGCTGGGATCACCGTGGCGACGCATGGATGCCTCTGACCGGGGACTTCTGTTGAATCGACTGGCCGACCGGATCGAGAAAGACACCGCCTACCTGGCAGAACTGGAGACCCTGGACAATGGCAAGCCCTATGCGGTGGCATATAGTGTGGATGTGCCCATGGTTGTGAAGTGCTTGAGGTACTACGCTGGCTGGGCTGACAAGTGGGAAGGCAAGACCATTCCTGTAGACGGGGACTTTTTCTGCTACACCCGTCATGAGCCTGTGGGAGTGTGCGGCCAGATCATCCCTtGGAATTTCCCATTGCTGATGCAGGCATGGAAGCTGGGTCCAGCACTGGCCACAGGAAACACTGTGGTGATGAAGGTGGCTGAGCAGACGCCTCTCTCTGCGCTGTATGTGGGGTTTCCCGCAGGGGTGGTAAACATCGTGCCTGGGTTCGGCCCCACTGCCGGGGCGGCCATCGCGTCCCACATGGATGTAGACAAGGTGGCCTTCACTGGTTCCACAGAGGTTGGGCAGCTCATCCAGCAGGCTGCTGGCAGCAGCAACCTGAAAAAGACGACACTGGAGCTGGGTGGAAAGAGCCCCAACATCATCCTGTCTGACGCCGACATGGAGGAGGCGGTGGAGATGTCCCACTTCGCTCTGTTCTTCAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGCACTTTTGTACAGGAGGACATCTACAACGAGTTTGTGGagcgcagcgtggagaggactaagaagagagtggtgggagatcCCTTCAACCTGAGTACTGAACAGGGCCCACAGGTGGATGAAGAACAGTTCCAGAAGATCCTGGGTTACATCAGCACAGGGAAACGAGAGGGAGCCAAACTTATGTGCGGGGGTGGTGTGGCAGCTGACCGAGGGTACTTCATCCAGCCCACTGTGTTTGGGGACGTGAAGGACAACATGACCATTGCTCGAGAGGAGATCTTTGGTCCAGTAATGCAGATTCTGAAGTTTAAGACGCTGGAAGAGGTTATTGAACGAGCTAACGACACGAAGTACGGGCTGGCAGCTGCTGTCTTCACCAAGGACATCGACAAGGCCCACTACGTCTCTGGAGCCCTGCGAGCTGGCACTGTCTGGATTAACTGCTATGATGTGTTTGGGGCCCAAGCTCCGTTCGGGGGCTACAAGGCTTCTGGAGTTGGGCGTGAACTGGGAGAGTACGGCCTGGACAGCTATACTGAAGTGAAAACCgTAACAATCAAGGTTCCACAGAAGAATTCTTAAACACTGATTTGATCTCCAAACACTGATAGACAAACTGATGATGCCGTGAAGAGGATATTATCACAGGAAACCACCAACTCTCTGGATTGTgctttccttcttcttcttttttttttaataaatctgcTCAGACAACAGTATCGAGCTGCGGATTTTGCAAGTGAAGACACATTTAATTGCTTCTCTTCTTCAAATGCACTTATTTCTTTTTCCCAAGTCTCActcttgtttttgaaatatgtttgtcCTGAAGAATAAGATCATTACAGTACTGGATCAGTATTGTCTATTGATAGCAGGACTGCCAGACTAGTTCTATTAGAGATGCTGAGAATAATGTTTCCTCTGTTCTTCATCTGTCTTCTTGAtgtgttaaaatacatgcaCTGAATGAAGCATTAAGACATTCATAATACGTTTtggggttttt

Function

symbol description
aldh2 Enables aldehyde dehydrogenase (NAD+) activity. Predicted to be involved in alcohol metabolic process and carbohydrate metabolic process. Located in extracellular exosome. Implicated in several diseases, including alcohol use disorder; artery disease (multiple); diabetes mellitus (multiple); diabetic neuropathy; and liver disease (multiple). Biomarker of hepatocellular carcinoma.

NR:

description
PREDICTED: aldehyde dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018868 True 1969 mRNA 0.52 13 22998635 23011253

Neighbor

gene id symbol gene type direction distance location
AMCG00018867 ptpn11 coding downstream 5398 22987225 ~ 22993237 (-)
AMCG00018862 NA coding downstream 71200 22899552 ~ 22927435 (-)
AMCG00018863 NA coding downstream 111591 22876661 ~ 22887044 (-)
AMCG00018858 bup1,upb1 coding downstream 122875 22871159 ~ 22875760 (-)
AMCG00018855 snrpd3,LOC105014836 coding downstream 135856 22861091 ~ 22862779 (-)
AMCG00018866 NA coding upstream 1169 23012422 ~ 23032810 (-)
AMCG00018864 NA coding upstream 23116 23034369 ~ 23047483 (-)
AMCG00018865 NA coding upstream 45067 23056320 ~ 23083052 (-)
AMCG00018869 NA coding upstream 75508 23086761 ~ 23087315 (-)
AMCG00018871 NA coding upstream 812213 23823466 ~ 23827059 (-)
G119181 NA non-coding downstream 13863 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 15069 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 140956 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 232609 22762360 ~ 22766026 (-)
G119072 NA non-coding downstream 331425 22666929 ~ 22667210 (-)
G119235 NA non-coding upstream 98348 23109601 ~ 23111520 (-)
G119382 NA non-coding upstream 1508160 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 1554893 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 1825534 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 2033698 25044951 ~ 25045344 (-)
G119144 NA other downstream 192297 22804345 ~ 22806338 (-)
G118936 NA other downstream 884940 22080464 ~ 22113695 (-)
G118727 NA other downstream 2300808 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 2308713 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 2320198 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 2064145 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2123518 25134771 ~ 25171644 (-)
G119545 NA other upstream 2174954 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3440471 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 3766382 26777635 ~ 26797720 (-)

Expression


Co-expression Network