AMCG00018870 (pitpnb,LOC106585622,LOC106580376)


Basic Information

Item Value
gene id AMCG00018870
gene name pitpnb,LOC106585622,LOC106580376
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23860512 ~ 23873031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018870
AAGGAGCTGGTTAGTAACACCGACTGTCCCCGCATGTGCGCGTACAAACTCGTCACTGTCAAATTCAAGTGGTGGGGCCTGCAGAACAAAATAGAGAACTTCATTCACAAGCAAGAGAAGAGGATTTTCACAAACTTCCATCGTCAGCTCTTCTGCTGGATTGACCGATGGGTGGAGCTGACCATGGAGGATATCCGGAGGATGGAGGACGAGACGCAGAAAGAGCTGGAGGAGCTTCGTAAACAAGGTCAAGTCCGGGGCACCAGTGCTGCAAATGACGAATGAGGCagtatgagaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaaaggaaaaggccaATCACTGGCAGAGTTTACCTTTTCTCACCTGATTGGGGTTTGTTACAATTGATCAACTGTACTGTTCCTGACCTCATCGAGATTGATAAACTGCTATagacaaaaaattaaaacaatgagaaaaataagtaaaaaatattaaaattaaaaaaattgaaaaacaaatgttaaaaaataaacacaaaaataaaatacttggggctacatttgaaaatccaacaactacagaaagaaaatatgtgaGTCCTGTTTTGAGTAACGGAATACGGTTGTAATGGCAaaccatttccaaaacaaaacacctaaTTGGTATGATTTCATCTTTGGCAGGTTTTGgaccaatttgttttttcttttttctttctatctgaAGTTCTACTTCTTGTCGAGTCTCTTGTGTTAACtgttatagtttgttttttgggtgGTTCCCTTAAAGAACTATGTACACACCATCTCTCTTATTCCTACCCCCATCACTTGGATCGTCTGTGTATGGCCATGCATCTTTTAAACGTCATGAGTTAAAAATTGGAActccaggttttgtttttgttgtgttttacattttaatttagatttttgccCTGTTCTTTACTCTAATAATCTGCCATTTGGAAGAAACCATAAATTAATCCTTGGATGATTGGGAGACAAACTCCCCACAAAGAGCCTTGTTCAATGATTGCCCTCAGATCAGTGCTGAGAACACATGGCCAAAGGTAAATCTTGGTTAACAAATTTCATAAGCTTCACGAGTCTGGCTTTTGGgattcagttaaattaaatgagaGGCAAAGCTGccttttattttgcttctaATCGTAGCAGGACTTTATCTCGGCCACCTTCAAAGTATGCTccaaaccttttttctttcaaggaGGCCtaactgatatatataatatatatatacacacgaaCACAGACTTTGTTGCTATGGAcaactttagtttttttgttgtttttttgccccCCTGTCATTTAAAGTTGATTAtagctgcattttaaatatttattaggGCAAATGTTGAGAGTTGCagcgttttcttttttataaatgtCCTCTAGCTCTAAAGCGAAGCAGATATGGCTTCTGACAGCCATAGCCCCCTGGTAGAAGCAGCTTAATACCACAGGCTAGCTTAAAGCACCCCGCTGCATGTAAATTCTGCGTTCTCCAGAAACGTCTCGGCTTCCTCGTCACCTGTTGCTTTTAAACAGAATGCTGTTCAATTGAGACACAGGATCAATGTTgagtttgtggttttcttacTCCTAATGTTGAGGAATAAAttgtcccccaccccccttctttttcttttcttttcttttttttgtgtcccCAATATACTTGTATGACCAGATGGCAGGGATGACATTATATTACCTCACTATCAGGACAGAGCATCTTTCATTAAGGGAAGCCATTAAAGAAAGCaatgtgtgtgttctgcagAAATCTATTACATTGACTGTTCAGGCttcgttttggtttgtttgtttttggttttaaattgcCCTGTGATGTTTCATTGACTTAACTGCTGTTTATTGGTAGAACCTTTCAATCAATGGATTGTAAACCATGCTGCTTTGAGTACAGCCATGTTATTTTAGACTATGTTTGATGATAGAATGGTCAAAATGCAGtcattatacatgttttttttcattttgttattgattttgcAGTTGACCATCTCCTGAGAAAATTGCACGTTTTGCAATAAGCTTAACCAGATAATCAAagttgtaaatgttttacataataaaagaAGAATTCAGTGTTTGCCGACCCAATAAACGTTTTGAGCATACCACACGTGCACGGACACAGTCCTGTTATCCAGTCTATATCATTTAATTGTCAATCTTGTTTACAATGCGGTAGTACTTTAGAGACATCATGATTGGTTAACAGGAGAGGATATTAAGTGTTAAACTTAATATTACCCTACCCTTAATGTGACATTTTCTCAGTAAATGGTCAATTAGATACTAAAGTCGAATTAGCCTACAAaccacaatgtaaaaaaataaatttgaatgcCAAGAACTTTAAATTTTTAATTGACCTGAATCTTGGCGCATCTCTTTCCATCCAGTTGCTTCTGTTTGTCCTGTGGTACACTGCAAAACCATGTCAGGTCTTTCCTGATAGATGTGTTTTCAACCACTCACTGATCCATATCTCTATTCAAACTGGGCTTCACAGTGAGAGGAAAGTGAGTGcttcatttataaattaaaatgttaatcttGTTGATTTTAACATTCAGTTTGATCAATGTCAAAGGTCAGTTTCATGGCATTGGTTGGTCCCAAGGCAGGGGGGAATAAGAAAACGATTAAAGATACAAATGACACTGACAAAATGGAGTTTACTTTCTGTACAGCAGCATCTTTATGGGTAGGGGGGAGAAAAGGGGGGtatgggagaaaaacaaatgtacagtataatcatGATTAAACATACTTTACTTGCAAAATCGACTACTGTTAATTTTCTGAAAGATGGATACTTTTAAATGTCACTTATTTTCTGATGTTGAAATTCAGGGGATATTGTagtgaatgtaaaatgttatactttttttgttgttctttttgcaGTTTATGAACTGCAAGAGATCTAGACAATGGAACTAAACCGAATATCTAATAAATTT

Function

symbol description
pitpnb Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in trans-Golgi network. Is expressed in eye; retinal cone cell; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta).

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018870 True 3012 mRNA 0.37 3 23860512 23873031

Neighbor

gene id symbol gene type direction distance location
AMCG00018871 NA coding downstream 33453 23823466 ~ 23827059 (-)
AMCG00018869 NA coding downstream 773197 23086761 ~ 23087315 (-)
AMCG00018865 NA coding downstream 777460 23056320 ~ 23083052 (-)
AMCG00018864 NA coding downstream 813029 23034369 ~ 23047483 (-)
AMCG00018866 NA coding downstream 827702 23012422 ~ 23032810 (-)
AMCG00018872 pitpnb,LOC107706770,LOC108425199 coding upstream 21461 23894492 ~ 23928438 (-)
AMCG00018873 ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375 coding upstream 67986 23941017 ~ 24002217 (-)
AMCG00018874 ttc28,LOC107705044,LOC107602249,LOC107706742 coding upstream 149641 24022672 ~ 24026598 (-)
AMCG00018875 ttc28 coding upstream 196923 24069954 ~ 24087249 (-)
AMCG00018878 NA coding upstream 441402 24314433 ~ 24315050 (-)
G119235 NA non-coding downstream 748992 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 875740 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 876946 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1002833 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1094486 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 646382 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 693115 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 963756 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 1171920 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 1389331 25262362 ~ 25333175 (-)
G119144 NA other downstream 1054174 22804345 ~ 22806338 (-)
G118936 NA other downstream 1746817 22080464 ~ 22113695 (-)
G118727 NA other downstream 3162685 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3170590 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3182075 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 1202367 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 1261740 25134771 ~ 25171644 (-)
G119545 NA other upstream 1313176 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 2578693 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2904604 26777635 ~ 26797720 (-)

Expression


Co-expression Network