AMCG00018872 (pitpnb,LOC107706770,LOC108425199)


Basic Information

Item Value
gene id AMCG00018872
gene name pitpnb,LOC107706770,LOC108425199
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23894492 ~ 23928438 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018872
AGCACGGCCCAATCGGGTGCGTCCCTGCTCTGTCTCCTCACTGGAGCGAGCGTCTCCCTCTCTGGCCAATCAGCGACGGCAGAAGGCGGGATTCAGTCGACATTGAAAAAGCGCGGTGACGTCAGCGCCTGCGCAGCCGCAGCCGGTGAAGAGAAGATGGTGCTGATTAAGGAATAtCGTGTGGTTTTACCCTGCTCGGTGGAAGAGTATCAAGTTGGGCAGCTCTTCTCAGTGGCGGAGGCGAGTAAGAACGAGAccggaggaggagaaggaattGAAGTCCTAAAGAATGAGCCCTATGAAAAGGAGGGGGAGAAAggacagtacacacacaaaatctacCATCTAAAGAGTAAAGTTCCCGGATTTGTAAAGATGATTGCACCAGAGGGGGCCCTGGTGTTTCATGAAAAGGCATGGAATGCATATCCTTACTGCAGGACAAGTAAGTGCCCAGCATATGTGTATCTGTTAAAATCTGCTTCAGAAATCCAAAATGAATACATGAAAGATGACTTCTTTATTAAGATTGAAACATGGCACAAACCAGATATGGGAGCACTAGAAAACGTTCATGAGCTGGATGCCGACACATGGAAGAATGTTGAAGTAGTACCTATTGACATTGCAGATAGAAGTCAAGTAGACCCTGGAGGTTAG

Function

symbol description
pitpnb Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in trans-Golgi network. Is expressed in eye; retinal cone cell; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta).

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018872 True 660 mRNA 0.48 7 23894492 23928438

Neighbor

gene id symbol gene type direction distance location
AMCG00018870 pitpnb,LOC106585622,LOC106580376 coding downstream 21461 23860512 ~ 23873031 (-)
AMCG00018871 NA coding downstream 67433 23823466 ~ 23827059 (-)
AMCG00018869 NA coding downstream 807177 23086761 ~ 23087315 (-)
AMCG00018865 NA coding downstream 811440 23056320 ~ 23083052 (-)
AMCG00018864 NA coding downstream 847009 23034369 ~ 23047483 (-)
AMCG00018873 ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375 coding upstream 12579 23941017 ~ 24002217 (-)
AMCG00018874 ttc28,LOC107705044,LOC107602249,LOC107706742 coding upstream 94234 24022672 ~ 24026598 (-)
AMCG00018875 ttc28 coding upstream 141516 24069954 ~ 24087249 (-)
AMCG00018878 NA coding upstream 385995 24314433 ~ 24315050 (-)
AMCG00018877 NA coding upstream 428500 24356938 ~ 24370642 (-)
G119235 NA non-coding downstream 782972 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 909720 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 910926 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1036813 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1128466 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 590975 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 637708 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 908349 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 1116513 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 1333924 25262362 ~ 25333175 (-)
G119144 NA other downstream 1088154 22804345 ~ 22806338 (-)
G118936 NA other downstream 1780797 22080464 ~ 22113695 (-)
G118727 NA other downstream 3196665 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3204570 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3216055 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 1146960 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 1206333 25134771 ~ 25171644 (-)
G119545 NA other upstream 1257769 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 2523286 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2849197 26777635 ~ 26797720 (-)

Expression


Co-expression Network