AMCG00018873 (ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375)


Basic Information

Item Value
gene id AMCG00018873
gene name ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23941017 ~ 24002217 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018873
ATGAAAGGAGATTATGAGACTGCACTGAAACTCCACAAAACTCATCTCTCCATTGCTCAGGAGCTCAGCGACTATGCCGCCCAGGGACGAGCTTATGGCAACATGGGGAATGCCTACAACGCCCTTGGTATGTTCGACCAAGCTGTCAAGTACCATCGGCAGGAGCTGCAGATCTCCATGGAGGTGAACGATCGAGCCTCACAAGCCTCCACGCACGGGAATCTGGCTGTAGCTTACCAGGCCCTGGGAGCCCACGACCGCGCCTTACAGCACTACCAAAACCACCTCAACATCGCCCGCGAGCTCCGTGACATTCAGAGCGAGGCTCGTGCACTCAGTAACCTAGGTAACTTCCACTGCTCCCGGGGAGAATTCCCGCAAGCTGTGCCCTACTATGAACAATACCTGCGACTCTCTCCTGAGCTTCAGGACATGGAGAGTGAGGGCAAGGTGTGCCACAACCTAGGATATGCCCACTACTGCCTGGGCAGCTACCAAGAGGCGGTGAAGTACTATGAACAGGACCTAGCGCTGGCCAAGGACCTCCACGACAAGCTGAGTCAGGCCAAGGCCTACTGCAACCTGGGTCTGGCGTTCAAGGCCTTAGGAAACTTCAGCAAAGCAGAGGAGTGCCAGAAATATCTCCTCTCCCTGGCCCAGTCCCTGAATAACTCACAGGCTCGTTTCCGGGCCTTGGGCAACTTGGGCGACATCTTTGTGTGCAAGAAGGACATAAATGGGGCCATCAAGTTCTACGAGCAGCAGCTGGCTTTGGCCCACCAGGTGAAGGAACGCAAACTGGAGGCCAGTGCCTATGCGGCATTGGGAGCGGCCTACAGAATGATCCAGAAATATGATAAGGCCCTGGGCTACCACACCCAGGAGCTCGAAGTCTATCAAGAACTGAGCGATATCCAGGGGGAATGTAAAGCCCATGGGCACCTTGCAGCTGTCTACATGGCCCTTGGCAAATACACGATGGCCTTCAAGTGCTACGAAGAGCAGCTGGACCTTGGGCAAAAACTGAAGGACCCCAGCATTGAGGCACAGGTCTATGGCAACATGGGCATCACCAAGATGAACATGAACGTGATGGAGGAAGCCATTGGCTACTTTGAGCAGCAGCTGGCCATGCTACAGCAGCTCAGTGGCAATGAGGCAGTGCTGGACCGAGGGAGAGCTTATGGAAATCTAGGAGATTGCTATGAGGCTCTGGGTGACTTTGAGGAAGCCATTAAGTATTATGAACAATACCTGTCCGTGGCTCAGAGCCTGAACCGTATGCAAGACCAGGAAAAGGCTTACCGAGGCCTAGGAAATGGGCACAGGGCGATGGGAAGCCTGCAGCAGGCCCTGGTGTGTTTCGAGAAGCGGCTGGTGGTGGCCCATGAGCTGGGGGAGTGTGCCAACAAAGCGCAAGCCTACGGGGAGCTGGGCAGCCTCCACAGCCAGCTGGGCAACTACGAGCAGGCCATCTCCTGCCTGGAGCGACAGCTGGGCATCGCCAGGGAGACCAAGGACCGGCTCCTGGAGAGCGATGCATCCTGCGGCCTGGGAGGAGTGTACCAGCATATGGGGGAGTACGAGACTGCCCTGCAGTACCACCAGCTGGACCTGGAGATCGCCGAGGAGACCAACAGCCCCGGCTGCCAGGGCCGCGCGTACGGCAACCTGGGCCTGACTTACGAGTCCCTGTGCAACTTTGAGAGGGCGGTGGTGTACCAGGAGCAACACCTGAGCATAGCGGCGCAGATGAACGACCTGGCGGCCAAAACCATGGCCTACAGCAGCCTGGGCAGAACACACCACGCCCTGCAGAACTACTCCCAGGCTGTCATGTACCTGCAAGAAGGCTTGCGATTGGCCGAGCAGCTGGGCCGAAGGGAAGATGAAGCCAAGATCCGGCATCGCCTCGGTCTTTCTTTGTGGGCCAGCGGCAACTTGGAGGAGGCCCAGCACCAGCTTTATCGAGCATCAGCATTATTCGAGACGATTCGCCACGAggcccagcacagcacagactaCAAGCTGTCTCTCTTTGATCTTCAGACATCCTCCTATCAGGCTTTGCAACGGGTCCTGACGGGGCAGCAGGACTCTGACCCATACACCCCCGTCACCATTGACCAGATCTTGGAGACGGTCAACAGTCAGCGAGGCCTGGTGCTGTACTACTCCCTCGCTGCCGGCTACCTCTACAGCTGGCTTCTGGCTCCCGGGGCAGGCATCCTGAAGTTTCATGAAGTGTACCTAGGGGATGGGATGGCGGAGGGCAGTGCTGACTTCCACGAAACGAGCAGTGTGGGTTTTCAGAGCGCCAACTGCTCCACTCTAGAGCAGCATATCGCCAATGTCCGGGAGGTGCTGGGAGTGGATTCCTACTACACCAGGGCCTGTTCCAGCAGTGAGACGGAGAGTGAGGCTGGGGATCTCCTGGACCAACAGTTCGAGGAGCTCAACAACAAGCTCAACTCTGTCACAGATCCCACCGGTTTCCTGCGCATGGTCAGCCGAAATAACCTCTTCAACAGGAGCTGTCAGAGCATGACCAGCCTCTTCAGTAACACCATGTCTCCAGCCAAGGACAGCACCTCTTCCCTGCTTCGCCGGAGCAGTTCCCTGAGCAAGCCGCCCCTCAGAGCCCTCTATGACCTCCTCATCGCACCCATGGAGGGGGGGCTGATGCACTCCAGTGGGCCCGTGGGCCGCCACAGGCAGCTGATCCTGGTGCTAGAGGGCGAGCTGTACCTCATCCCCTTCGCTCTGCTGAAGGGCAGCTCCTCTAACGAGTACCTTTATGAGCGCTTCAGCCTCATCGCCGTGCCCTCCATTCTAGGCCTCAACCCTGCCACCAAGTCTCACCCCAGGAAAGCTGCTCCAGCCTACTCCAGCTCTACCTCCATGGCGGCAGTGGTTGGGAACCCCCGGCTGCCCTCCTCGGTGATGGACCGCTGGCTGTGGGGGCCCATGCCCTCAGCAGAGGAGGAGGCCTACATGGTGTCCGAACTGTTGGGCTGCCAGCCTCTAGCGGGGGCGGCGGCCACCAAAGAGCGGGTGATGAGCGCCCTGAGCCAGGCCGAGTGTGTCCACTTCGCCACGCACATCTCCTGGAAGCTAGCAGCCCTGGTCCTCACCCCTAATGCGGAGGGGCCCccgggaggaggagggggcggaGGGGGTGGCAGTGGGGGCGGAAAGGGCTCCTACGGAAATAGCTACACCATCCCTGAATCTCTGCGCATGCAAGACGATGCCAGTGACGTGGAGAGCATCACCGACAGCCCCCCCCTGCAGGAGTTCCTGCTCACGGCTGCCGACATCCTGGACCTGCGGCTGCCCGTCAAGCTGGTGGTGCTGGGCTCCTACCAGGAGTCCAATAGCAAGGTGACCGCTGATGGAGTGATTGGCCTGACCAGAGCCTTCCTGGCTGCTGGAGCCCACTGTGTCCTGGTCTCCCTGTGGCCTGTGCCCGTTGCAGCCTCCAAGATGTTCGTCCACGCCTTCTACTCGGCTTTGCTCAATGGCATGAAGGCCAGCGCTGCCCTGGCTGATGCCATGAAGACTGTACAGAGCAGCAAACAGTACTCCCACCCCTCCAACTGGGCAGGGTTCATGCTGATTGGGAATGACGTGAAGCTGAACAGCCCCTCTTCTCTGATTGGACAAGCCTTGACTGAGATCCTGCAGCACCCGGATCGAGCTCGAGATGCTCTGAGAGTGCTGCTCCACCTGGTGGAAAAGTCCCTCCAGCGCATTCAGAACGGCCAACGCAACTCCATGTACACCTCCCAGCAGAGTGTGGAGAACAAAGTAGGGGGCGTCCCGGGCTGGCAGGCCCTTCTCACGGCCGTTGGTTTCCGTCTGGACTCGGCCGGCACCGGACTGCCTGCTGCTGTGTTCTTCCCCACCTCCGACCCTGGTGACAGGCTGCAACAGTGCAGCACCACGCTACAGTCCCTGCTAGGCTTGCCTCACCCCGCTCTGCAGGCCCTGTGTAAGTTGATCACGGCCTCTGAAACCGGAGAGCAGCTCATCAATCGGctccacCAGGTCCTGGTCCAGCTGCAGACCGGAGAGAAGGAGCACGACTTCTCCTCCACCCCGATCCAGGTGTCCATCAGTGTCCAGCTCTGGAGACTGCCAGGCTGCCACGAGTTTCTCGCTGCACTGGGCTTTGACTTGTGTGAAGTGGGACAGGAGGAGGTGGTTCTGAAAACAGGCAAGCAAGCCAATCGCAGGACCATGCATTTCGCGCTCCAGTCTCTACTGGCACTCTTTGATTCCACAGAGCTGCCAAAGCGCCTCAGTCTGGACAGTTCGTCCTCTCTGGAGTCCCTGGCCTCGGCCCAATCTGTCTCCAACCCTCTGCCACTGGGCTACCCCAACCCGCCCTTTTCCCCTCCTTGCCCTGACAGCCTGGCCTCCGATGCCATCTCGGTGTACAGCCTGAGCTCCATCGCCTCCTCTATGAGTTTTGTCTCCAAGTCTGAGAGCACGTCCGAGTACATGAGCCACCGGGCCCGGCAGGACATGGAGCGCCACCGGAGCCTCTACCCCCACAAACCCTCGGTGCCCCGCAGCCGATCTTCCCCGCATGGAGGGGTGTCCGCTGGGAAAGATGACGAGGAATATGAGGGCTTCTCCATCATCAGCAGTGAGCCACTAGCTGGGAACTCCGACTCCCTGCCCCTCCCGCCCGGCCACAAGCCCATGAGAGGGAGTGCGAGAACTTCGGAAGCGTGCTACGGGGCGTCCGTGTCATCCCGGGGCAGTGTCAGCACTCCCACATCTCCCATCAAAATGACTCTCATCCCCAGCCCCAATTCACCCTTCCAGAAAGTGAGCAAGGTCACCAGTTCAGACACGGGTGAGTCGGACCAGTCCAGCACAGAGACGGACAGCACAGTGAAATCCCAGGAGGAGAAGACCACCAAGCTGGACCCCCAGGAGCTCGCCCAGAAGATCCTGGAGGAGACCCAGAGTCATCTGATTGCGGTCGAGTGCTTGCAGAGGAGTGGAAGTCAGGCTAGTTCGTCAAGTGAACCCACCGGTGGGGCCTCCACCCCCACAGGCGGTTCAGCCTTCAGATCCTCCGAGACGAGCGCCTTCAGTCGCCCCCACAGCGCCAGCCTCAAGAGCCAGTCGTCGCCCCTGACGGTCAGGCCCAAACCTCCCTCCCGGACCTCCTCTCTGCAAAAGGTCAGCTCAGGATACAACAGTCCAGCGACATCGGAGACCTCTCTCAAAGACCAGCAGAGTGGCCATCCATCCCCCACTCTAGACCAAGCATCCCTTGCCCAGTTCAAGCTGAAGTACCCCAGCTCGCCATACAGCGGGCACATTTCCAGGTCGCCCAGCAACATGTCCCCAAGCTCAGGTCACCAGTCTCCGGCTGGGAGCGCCCCCTCACCTGCTCTCTCGTACTCCTCTACTGGCTCGGCGCGCTCCAGCCCAGCTGACGCCCCAGACCTGGACCGGCTCAAGCTGGCTGCCATCGATGAGAAAGTCCAGGCCATTCACAACCTCAAGACGTTTTGGACAAACACTTCGCAACATCCACCTGGGCCCGTCAAAGCACTGCGGGGGAACATCGGTGGCACCAAGAGGGATGTCCTAAGCCTGCTCAACCTCTCGCCACGTCACAGCAAGGTGGACAAGGGTATAGACAACCTTGAACTCAAAGAGCTTGGCTTACAGCCGATGGATCTGCCAACAAGGAACCCTCCCAATGGGCACAAGAGGCCCGAGACAAACAGGGtggccccctccccctctgcgTCCACAAGCAGCAGCCCCGGGGGTCGCCCCATCAGACTGCCTTCTGGGAACGGCTACAAATTCCTCTCGCCTGGAAGATTCTTCCCATCTTCAAAATGTTGAGTCCTTTGAACAATCTCTTCTTCATTTTGTTATCCACTATTCCTTTGCCTTGGACAGCAACCGGTTGCTCAAATGGGAGATGTCGAGCTTCAAGTCATCTTGAGATTTTCACAACTGCAACACAGGTCATTTCTAGAGTGTTGATTAGCCTTGAAACATGTGATTTCGAGATTATCCTCACACATTTTGACATAAGTTTTCCTTCGTGTGGAAGAGAACTAGAATGATGGTTGGAAGATCTGAGACTTCAAATACCAAGCAGTATTTCCACAGAACCATTGATCATTAGCTGTTTGTGTTACCCAAGATGATACAccttgactgttttgttttattttattattgttttgtaaattaaattcagtgtttccCAATCAGTATTAAAcacttttatattataaaaagcaaacaaaactaccatgtaaaaaaaaaaaaagaaaaaaaaaaaaggatttcatatttttattgaaatggcaAAAGGCATTTGGCCTGATTTCTTTGTGATTTGAGTGTCTATATTAAAGCATGGATTCTCTTGCTATTCAATGTTAAGTACCACGTATGACTTTTTAGCACACGATTTTTGCAAACACATGGACTTTCATTcgaaaaatttaaaaaagacatacaTC

Function

symbol description
ttc28 Acts upstream of or within microtubule polymerization or depolymerization. Is expressed in blastomere and nervous system. Orthologous to human TTC28 (tetratricopeptide repeat domain 28).

NR:

description
PREDICTED: tetratricopeptide repeat protein 28 isoform X2

GO: NA

KEGG:

id description
K24936 TTC28; tetratricopeptide repeat protein 28

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018873 True 6512 mRNA 0.57 16 23941017 24002217

Neighbor

gene id symbol gene type direction distance location
AMCG00018872 pitpnb,LOC107706770,LOC108425199 coding downstream 12579 23894492 ~ 23928438 (-)
AMCG00018870 pitpnb,LOC106585622,LOC106580376 coding downstream 67986 23860512 ~ 23873031 (-)
AMCG00018871 NA coding downstream 113958 23823466 ~ 23827059 (-)
AMCG00018869 NA coding downstream 853702 23086761 ~ 23087315 (-)
AMCG00018865 NA coding downstream 857965 23056320 ~ 23083052 (-)
AMCG00018874 ttc28,LOC107705044,LOC107602249,LOC107706742 coding upstream 20455 24022672 ~ 24026598 (-)
AMCG00018875 ttc28 coding upstream 67737 24069954 ~ 24087249 (-)
AMCG00018878 NA coding upstream 312216 24314433 ~ 24315050 (-)
AMCG00018877 NA coding upstream 354721 24356938 ~ 24370642 (-)
AMCG00018879 hectd4 coding upstream 384382 24386599 ~ 24455299 (-)
G119235 NA non-coding downstream 829497 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 956245 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 957451 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1083338 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1174991 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 517196 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 563929 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 834570 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 1042734 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 1260145 25262362 ~ 25333175 (-)
G119144 NA other downstream 1134679 22804345 ~ 22806338 (-)
G118936 NA other downstream 1827322 22080464 ~ 22113695 (-)
G118727 NA other downstream 3243190 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3251095 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3262580 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 1073181 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 1132554 25134771 ~ 25171644 (-)
G119545 NA other upstream 1183990 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 2449507 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2775418 26777635 ~ 26797720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001835 TTC28 coding NC_007121.7 CM002894.2 3875716 ~ 4039786 (+)