AMCG00018874 (ttc28,LOC107705044,LOC107602249,LOC107706742)


Basic Information

Item Value
gene id AMCG00018874
gene name ttc28,LOC107705044,LOC107602249,LOC107706742
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24022672 ~ 24026598 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018874
ATGAAAGGCCCAGCTGAGGAGCCCACCCACCCAGATAAAGTCTGCAACAACGCGGCCTCCTCCGCGCTCAGCAGCCTGGGCCACGTGTACACCGCCATCGGGGACTACCCCAATGCCCTGGCCAGCCACAAGCAGTGCGTCATGTTGGCCAAGCAGTCCAAAGACCAGCTGTCGGAGGCGCGGGAGCTGGGCAACATGGGCGCTGTCTACATTGCCATGGGCGACTTCGACAACGCCGTGCAGTGCCACGAGCAGCACCTGGGCATCGCCAAGGCCCTGGGGAACAAGAGGGAGGAAGCACGGGCCTACAGCAATTTAGGGAGCGCCTACCACTACCGCCGCAACTTTGACAAGGCCATGTCTTACCACACACACGTGCTGGAGCTGGCACAGGAGCTAACCGAGCGACCCATTGAGATGCGGGCCTACGCCGGCCTGGGCCACGCCGCCCGCTGCATGCAGGACCTAGAGCGTGCCAAGCAGTACCACGAGCAGCAGCTCAGCATCGCCGAGGGCCTCAAGGACAGAGCGGCCGAGGGCAGGGCATCCTCCAACCTGGGTAAGATCAGTGAGGAAGTAccttatatatag

Function

symbol description
ttc28 Acts upstream of or within microtubule polymerization or depolymerization. Is expressed in blastomere and nervous system. Orthologous to human TTC28 (tetratricopeptide repeat domain 28).

NR:

description
PREDICTED: tetratricopeptide repeat protein 28 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018874 True 591 mRNA 0.62 3 24022672 24026598

Neighbor

gene id symbol gene type direction distance location
AMCG00018873 ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375 coding downstream 20455 23941017 ~ 24002217 (-)
AMCG00018872 pitpnb,LOC107706770,LOC108425199 coding downstream 94234 23894492 ~ 23928438 (-)
AMCG00018870 pitpnb,LOC106585622,LOC106580376 coding downstream 149641 23860512 ~ 23873031 (-)
AMCG00018871 NA coding downstream 195613 23823466 ~ 23827059 (-)
AMCG00018869 NA coding downstream 935357 23086761 ~ 23087315 (-)
AMCG00018875 ttc28 coding upstream 43356 24069954 ~ 24087249 (-)
AMCG00018878 NA coding upstream 287835 24314433 ~ 24315050 (-)
AMCG00018877 NA coding upstream 330340 24356938 ~ 24370642 (-)
AMCG00018879 hectd4 coding upstream 360001 24386599 ~ 24455299 (-)
AMCG00018881 rpl6,LOC107671003 coding upstream 432892 24459490 ~ 24462910 (-)
G119235 NA non-coding downstream 911152 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1037900 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 1039106 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1164993 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1256646 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 492815 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 539548 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 810189 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 1018353 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 1235764 25262362 ~ 25333175 (-)
G119144 NA other downstream 1216334 22804345 ~ 22806338 (-)
G118936 NA other downstream 1908977 22080464 ~ 22113695 (-)
G118727 NA other downstream 3324845 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3332750 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3344235 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 1048800 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 1108173 25134771 ~ 25171644 (-)
G119545 NA other upstream 1159609 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 2425126 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2751037 26777635 ~ 26797720 (-)

Expression


Co-expression Network