AMCG00018877


Basic Information

Item Value
gene id AMCG00018877
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24356938 ~ 24370642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018877
CGAGCACGTCGTGTTTTTGCTGGGATGTACTGTCCGAGACgcacaattaaatcaatgttatcATTAGTTATCGTGTGACCTCGGGTGGCTTTTTCCGCACTCGATTGGTTGAGCTGAGAAATTAAACTTTGTCCCGCAGATCGGCGGCGGAGCGGAGCAGCGCTACATTGCGTGGAGGGCGTAAGTGCTTTTTAAACAGCCAGTTTGTGAGGAAATGCTCAATGACCCATTCTCAAGGCAGGAGAACTGGTAGCTCAGCCATTACCaactttaaattgatttatttcaacgATGCAAGAcgtttttaatgatttgattCTGCACGACCATATGCTTGCAGTTTTGCCACTAGACTGCTTTAGCAGGTTTTGGCAGTTATCATTCCTCAGGGTAACTAACATTCAAACTCATTATTTGGGTACACATTAGACGTATGGTTTTCCCAGGTAGAGTTACACTTTCTAAACATGTTAAGCTTTCTGAAATACTTGTAATTGTGGACTTGGGTTCAATACagactttgacccacccgcaaatacaaaataaaaacaatgacataaCTATACTCAGTAACGTATTTGCTTTTTGTAAAATGCTTCTTTCCTCTACGTGTACATGTAACAGCTTTGAAGTGCAAGACTGTATTTTGCTTTTGGCGTCTGTGGGTCACCGTTTTGTATCGAGGTAAAGTTGGTTTTATATTCACACATTCAACAGACATTCGCCAACAGTCATTTAAAGtagtaaacaaatcaataactaATTCAGGGATTGTCACAGAAACCTCAAACTAGATACGATTAATTCTAAAATTGTCTGGCATACAACCTTTGTTTCGAATCAAAATTCtacttttgattttataaaaataaataaaataacgaCTGTTCAGAGCATGAAAACCACAGAGACCAACTGCCATGCCGAAATCTGGTTTGGTATTGTGAAGAACTCTATTCTTCAGAAGGAGAGAGGTCTTCAGCCTGCTTGTTTCATACAGAAACTGTATGCTTCCTTACGAGGGCAATACCGTGAGCATGTAATCCGGCATGGTTTGCCAGAAACCGTGCTAGAAAGGCCACTGGAGCCTAAGAAGCACAAGCTCGAGCATAATGAGGAGCAGTGGGCCAAAAGAGCAGACTCaatcccccaacccccccaaagTTTTTCGATGCCCCCGTCACAATACCAACTCCACAAGGTCCCTCCAGAAGAATAAAGCCAAGGGTCAACAAGAAGCCTAACAAGAAGTCCATTAAgGTTACTGCAGAAATGACCATAACAGAAGACTTGGATAACTCATCCTCTGCTGAGGCTTCAAAGCTGGTCTCCCAAAATGACGACATTTCTCAAAaggcaaaacaagaacaaaagcaTCAACAAGACAGATCAAGGCGAGATTGTCAACAACAGAGATAGAAAAGCAGATAAAGTCTCtctggagagaagaaaaaagtggGGTTATTGTGGCTGTAATTCAGTCAGGAGACAGAAAAACTACTTCTACTCTCTGAAACCACATCCACATCAAATATGCTGGACAGGTATTGTGCATGGAACCAGATACCATGATGCATCAAACACTGCGAAAgGTCAGAAAACCTAGAATTCTGTCCTAGAATTTCCAACTACGATGCGATCCTGGCATGCGCCAACATTAACAATCTGCACTGGAAGTTGTTGGTAAGAGAACCTTTTATTAAGTGTTggcattgcaaaacaaaacatctgtgtTTGTATTGGTACTTTGTTAAAAAGATTATTTGGCAAGAAAATATACGATCTCAACGGTCTATCTGCTGGATCCAGAAGGAGTGAAAGAACAACAATGTTCAAATGAAGCAGCAGCAAGAATGTGGTGAGCTTATACTCAATACTCTAATTCAAGTTTTACGTTACAACCAGTATAAAGGCCATGTTCACATATTAATGTAAGATTATTTTGACATAATTCACTCTTTTAAGAACCAGACACTGAAGTTTAATCACCTTGTTTGTATTTGCTGCATTGTCCTGTGAGCCCCTGACCCATATGTGTTCACCCTTGTTTGTCCACCCTGGTTATGTTGGAAGGAGTCCAGCACAGCCCCCTGCCTTTCCTCCCTGTCTGTTCTTTTAAGAACGCATGAGCCAATGCTTTAAATAAAGAGCTGTTGTTGCCTTTGAACTGGAGTCTGCACCTACTCTGTACCCAAAAACACTCAAAAGCGTTACAATACTTTTTGAGGTAATAGGACAATTTTGAAGCCAAGGGCTGCAGATGAAAGATGCTGTAGAGTTTGGCTTGTGAAAGTAAAACATTGGGGTAAATACTCAGTGGAAATGCACAAGGCCCTGCAGACAGGGCTCCAGATAGCCCACTCACCTGGACTCCCCTTTAAGTTCAATATAGAAATTTAACAGATTTTCAATTAATGAACAGATGGATAAGTCTTGGACCTAACAATTAAGGATTGTTTATTCGATGAGGGGTGTTGCCCCTCTGTTACAGTCCCACTCATGCACACATGAGTGTGTGCTTTGGCCAAACAGTATTCTGTGAGTTAttgttaacacatttttttaattcgaGTTAATTTAAGTAAATCCTGTGTAttggaattattttgtttatgatcTAGCAAGGTCATTGGAATATCTAGTGTTAACAAATtattgctctgttttttttttgtcctttctaTTATAATTTCACTTCCACTAATAACcagtaatgtaattttatacaTTACAATCCTGACATGaacttaaaacaataatgtttttctcaAACAGTGAATTCTTCAAAGTACGGTTGAACCGCCATGGGTTGGATGACTGGGTGTGGGTAAGGTGGAAGGGAGCCACCATCCAACATACAGTGCAAATAGACTCCTTCAGCTGTGGGGTCTTTGTATTGGAGATGGCCACACAGGTTGTTGGCAGCTTCCCCAACCTTCCAACTCATATCGGCATAAATTCCTCAAAGAACTAATTGTCCCTGAAAAGAATGAAGTTTGCAGAGGCCGTTCTACAGGCATCTACAGGCATCAGTCTTCAAAGCCAGTCAAGAATGCTTGATTTGTGCAAGCAATGATCCACAAGGAGATTCCCAAAGGTTCACCCAATGGATACAATGTTCAGACTGCCAGCAATGGTACCACACCTCGTGTCTGGGAATGAGCAAGAGAGGCTTCACCACAGCAAGAGAAGATGAACAGTGGAAGGGGCCTCTTTGCCGTAACTCCTTTTGAGCAGCAACTTTTCTGTCGGGCCCCTTCAGAATGGAATACTGAAGACTCCTTAGAACTTCAACTACACTCCCTCTGGATGACTACATGCCCTCTATCAAATCAAAACtagaatttaatttcaataaatcaCATCTAGTTTGAGGTTTCTGTGACAATCCCTGAATTAGTTATTGAATTTATTCTGccttaaatgcaatattattgactttatttttataaaatcaaaagtaGAATTTTGATTCGAAACAAAGGTGGTTAAAGTATGCCAGACAATTTTAGAATTCATTGTATCTAGTTTGAGGTTTCTGTGACAATCCCTGAATTGTccctatttatttgtttaaatggctATTGGCGAATGTCTGTTGAATGTCTTTTGAATGTGTGAATATAAAACCAACTTTACCTCCGTTTTGTTTGAATGCAGCTCTCACCTTTTTTGCTTACTTCTGGTTAAACTGCTTGTTCCAGTCACTATTTGCAACATATTTGCAATGCCAAATTTAAACCACCAGCTTTTCATTTGTCTCCTGGAAACCATCGTGTTGATATGTTTGGGATGTTAATAATATAAGAAACGGGTTAAGCAGAGGGGAGGACAAAACACATTGATGGATGGCCAAGTAGAGCACTATTTCCAGGGATACACTGGTCTGTTTGTACCCCAGTTTTGAGACCTACCAGTGTGTGTTGCTCTGCAGGGAGGCCCCAAATGGTGGAAATGGTTGCCACACCTGCACTAAATggcatattttttttgttccaggAAACCTTGGAAGAGCTATGGATGACATTCACCCTTTCCATGTTAACACTCCTCTGCTAGAGAGCCTGTACCTTTCTAAGAGGGCTGGGACTACAGTGTACATGAAGATGGACAATGCCCAGCCTTCAGGCTCCTTCAAGATCAGAGGGATAGGACTCCTCTGTCAGAAGGAAAGTCACACTGGGGTCACCATTTCACGGTCAGATGAGCCGGTGGACCTTGTACAGTTGGATGTCATGTGTTTCACAAACACTTTGAGGGGAAATGCTGGCCTGGCCACAGCCTATGTAGCACGGAAACTCAATTTACCAGCAACTATCATAGTGCCCAGCTCCACCTCCGATGCCATGGCCCAGAAATTGAGGGACCACGGTGCGAGCGTGAGAGTATTTGGGAAGGTGTGGGATGATGCCAACCAGGAGGCCCACAGATTGGCTGAGACTGAGGGCTTAACATTTGTGCCTCCTTTTGATCACCCACTGGTCTGGCAGGGCCATGCAAGCATAGTGCGGGAGCTCAAGGCCTCCATGCCATCCAAGCCTGGCGCTGTAGTAGTCGCAGTTGGaggaggtgggctgctctgtGGGGTGGTGGAGGGATTGAAAGAGGTTGGATGGGGTGATGTGCCAATCGTCGCCATGGAAACCAAAGGCGCAAACTGCCTGAACGCTGCAGTGACTGCTGGGAAGGTGGTGACTCTTCCAGACATCACCAGtGAGGCCAAGTGCCTGGGGGCCCTGACAGTGTGCAAGCAGGCCTTTGACGTCACCGCGGAGGGCAACATCATCTCTGAGGTGGTGACTGATCAGGAGGCCCTGAAAGCGCTGGAGCTGTTTGTCGATGAGGAGCGGGTTCTGGTGGAGCTGGCGTGTGGTGCCGCCCTGGCAGCCATCTACAGCGGGGTGATCCAGAGACTGCAGAGCCAGGCACGCCTGCCCTGCCTGCTCGGCCCCCTGGTGGTGATCGTGTGCGGGGGCAGCAGCATCAGCCTGGCCCAGCTCAGCCAGTTGAAAGACAAGCTGAGGGGATGAGAGGAACACCAGAGCGCAGGAGGAAAGGGGACTGAGGACAAGGTTATGAGTgccacaaatgtaaaaaatcacAATTGGTATGATTGGTATAATTGGTCATACTCTATGAAAGCCACGCTTATACGTCTGTCATAGTTTTCAGCCGAGACTCTTTCCATTGTGATGCTTTTTTCGCAGTTGAAATCTGTTCCGATCTGCTACAGTCCACTGTAATATACAGTTTCAGTATATTAAGGTGCATCACTAAATTGGCAGTTGCACTTTTTAATCACTTAGCATTCCTTGATTGCTCAGCACTTTTAATTTTGAATCAGGTGTAATTGTTAGTCATCTTTATGCACTGGTATACATAATGCAGTGTACCTGTTCCCAATCATATCGAGTTGTTGTCCTGCACCATGTTTGCTGTGTCTCTCAATTctcttgcactgtattttgtgttatatCACTCCTCTTAGTACTGCATTGTGTAAccccattatttttaataaatgattcCCTGACATGTAATGTGATTTACATTAGGAAGATTA

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0003941 L-serine ammonia-lyase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K17989 SDS, SDH, CHA1; L-serine/L-threonine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018877 True 5563 mRNA 0.43 15 24356938 24370642

Neighbor

gene id symbol gene type direction distance location
AMCG00018878 NA coding downstream 41888 24314433 ~ 24315050 (-)
AMCG00018875 ttc28 coding downstream 269689 24069954 ~ 24087249 (-)
AMCG00018874 ttc28,LOC107705044,LOC107602249,LOC107706742 coding downstream 330340 24022672 ~ 24026598 (-)
AMCG00018873 ttc28,LOC107602249,LOC107705044,LOC107588927,LOC106580375 coding downstream 354721 23941017 ~ 24002217 (-)
AMCG00018872 pitpnb,LOC107706770,LOC108425199 coding downstream 428500 23894492 ~ 23928438 (-)
AMCG00018879 hectd4 coding upstream 15957 24386599 ~ 24455299 (-)
AMCG00018881 rpl6,LOC107671003 coding upstream 88848 24459490 ~ 24462910 (-)
AMCG00018882 NA coding upstream 95769 24466411 ~ 24505090 (-)
AMCG00018880 brap,LOC107706763,LOC107712082 coding upstream 138836 24509478 ~ 24526970 (-)
AMCG00018884 mapkapk5 coding upstream 169739 24540381 ~ 24571184 (-)
G119235 NA non-coding downstream 1245418 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1372166 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 1373372 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1499259 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1590912 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 148771 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 195504 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 466145 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 674309 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 891720 25262362 ~ 25333175 (-)
G119144 NA other downstream 1550600 22804345 ~ 22806338 (-)
G118936 NA other downstream 2243243 22080464 ~ 22113695 (-)
G118727 NA other downstream 3659111 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3667016 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3678501 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 704756 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 764129 25134771 ~ 25171644 (-)
G119545 NA other upstream 815565 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 2081082 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2406993 26777635 ~ 26797720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location