AMCG00018882


Basic Information

Item Value
gene id AMCG00018882
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24466411 ~ 24505090 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018882
tttgtctcctttcAGACTGTTTTGGTCTTTTCGCCGAGAGCAACggagagagaaactgagagaGCTGAAAATCCTGTTTgtagtcattaaaatacaatttaaggaAACAATAAGACGGGAACTTAAACTCTCATCTTTCATTTACTGAAGATCGTTGACATATTGTCTTTTTAAACCGACAAAAAATAGAATacttaagatttttttttaaaaatagattgtaCAGCTGAgctagtgttattattattttagatttttttatttttcatttgattttgaaaatagtaAATCAATAGTCAATAACTCGTGTATGGGATCATCATCATGTCAATGAAGCAGGCCGGTGGTAACCGAAAACCCGGCGGCGGCCCTGCTGCGGCCTCTGGTGCCGGGGGAGGCGGGGGGACCGGCGGCCGACAGAGCCTGGGCAGAGGGCGCAACAGTGTTAAAGCTCCTTCATCAGCTGCAATTGCCTTCAATGGGGTTTATGCAAACATGAGGATGGTACATGTCCTGACGTCTGTTGTAgGGACCAAATGTGAATTAAAGGTCAAAAATGGAGTGGTATATGAAGGAGTTTTTAAGACGTATGGCCCCGAGtgtgattTGGTGTTGGATGCAGCTCACAGAAAGAGCCCCGACAACAGCCTGGGCCCCAGGCGTGAAGACATCGTAGAAAGCATCATGTTCAAAGCGTCCGACGTTGTAGTGGTGCAGTTTAAAGATGTAGACTTGAATTATGCAAGAAAAGTTTCTTCAGAAACAGATAATTTCACGGACTCTGCTGTCAGCTCACGCATAAATGGCGAGCACAAAGAAAAGGACCTCGAGCCCTGGGATGCTGGTGAAAGTGCCAGCGAAAGCCTTGAAGCCTTGGAAACAGACGTGGGTGCCTCTGGAGAGGGACAATTCGGAGGAGTTCCTGAAGCGCGAGGCAAGGGCTGCTCAGCTGGCCGAAGAGATCGAGTCCAGCGCCACTTACAAAGCCAGGGTGGCCTTGGAGAATGACGACCGCAGCGAGGAGGAGAAGTTCACGGCCGTGGCCAGGACTGCCGAGCGGGAGGGGCACAGCATCAACTCCAGAGAAAACAAGTACATTCCACCAGGGCAGAGGAATCGGGATGGGATACCATGGGGAACAGGCCGGCAGAACTCCCCCAGGTTGGTCCAGGGTGGCTCTGGACCTCCCCCTCCTCGCTCAGGACCTCACGACTACAGCCCCAGCTCTGGAGGAGACCAAAGAGTGGTCAACGGAGTTTTCCAACCCTTTGAAAACTTTGCCAATTTAAGGTGTTCCCTGGCCATCGCCTTGCCCATCTCCTTCCTCTCGCCCACCTTCTCGCTACCAGTCAGGCCCCACCTCTCTTCCACCTCGGGCCGCCACTCCCACCCGGCCACCTTCCAGACCCCCCTCCAGGCCCTCGCGCCCCCCGTCTCACCCTTCTTCTCATGGCTCTCCAGCTCCTGTCTCTACTATGCCTAAACGCATGTCTACAGAAGGTCCTCCCAGAATGTCTCCAAAGACTCAGCGTACACCACGGATACACCGGGCGACCACCGGGCGAGGCAGTGTTCCAGGGGCGGACTTCATGTCCCACAATGCATCCTCAGAAGTGTCTTCCTTGCCAGCGAGAAGCAGCCCTTCAGGTGGGAGCTGGTCCCAGGTTGTTAGCGGAGGTCCAACCGCACGGTTGTCTCCTAAAGCACACAGAGCAAGGCAGAACAGTATCGGAAGTGCTTCCAGTGGGTCGTCTCTCCCGTCTCCTCAAGCCGGTACTGTTCCCATGGAGCCTGTGGCCATGCCGGTGTCTGCGGTGTCTCCGGCAACAGCCAGCCCCGCCTCCAACAGAGCAGTCACCCCATCGGCAGAGGCTAAAGAATCCAGAGTCCAAGAGACGAGGCAGAACTCCCCAGctgcaaacaaagaaaacatcaaaCCAATCGAGACCTCTCCTAGCATCGCCAGGCCTGTCAGTAAAGGTCCACCCACAATGGCTCCAgatcaaaggaaacaaatagACAACTTAAAGAAATTCAGTGTAGATTTTAGGTTGCAACCAAGTTCCACCTCTGATCCAGTGTTTGACCAGATGATCAGCAAGCCCCGTGACCCCGGTGAGAAGCCCAAGGAACTGCACCTGGAGAAGAGCCTGGAGCCCGGCTGCAAGGATTCTGCCAGTGAGGATAGCTCGGTGACCAACACCacgggcagcagcagcagcagcagcaagccGGGCAGCCCCAGCACCTCCCCTTCCGGCCTCTGCAGCGCGGAGCAGAAGAGGGGGCCGGACGTCACCTCACAGGGTGTCCAGACCTCCGGGCCAGGCAGCAAGCTGGACAAGGATGAGAAAGATGACAAGAAAGACACGACTCCAGAACAAGTTAGGAAATCAACTCTGAATCCTAATGCCAAGGAGTTCAATCCCAGGTCATTCTGTGCTCAACCCAAACCTGCCACTACTCCCACCCCTCCCCGCCCTCAGGGCCAGCCTAGCCCCATTGTGGTGCAGCAGCCCCCCACAGTGTACAGTCAAACCGTGTGCTTCCCTCAGATGTACCCACTTCCAGTCAGCCCAGGAGTGCAGAAAAGCATTATCTGGAAGCCTCCAACAATGTACCACGTCCCAGTGACTCCCATGACCGTGAACCAGACGAAGTCCTACAGAGCAGGTAAAGTGCCCAGTATGCCCCAGCAGAGGCCCGACCAGCACCACCCTCAGGGCACACCGACCATGATGCATCCCGCCACCGCAGCAGGGCCGCCCATCGTGGCCCCCAGCCCGGCCTACTCGGCGCAGTACTTCACCTGCAGCCCCCAGCAGTTCACCAACCAGGCCCTGGTGCAGCAGGTGCCACACTACCAGTCCCAGGCGCAGCATGTCTTCAGCCCCGTCATGCAAGGCAGTGCCCGGATGATGGCACCCCCTTCTCACGGCCAGCCTGGCCTGGTGTCGTCCTCGACATCGCAGTACGGGCCCGCGGAGCAGACGCACACCATGTACGTGTCACAAGGCCCCATCCCACAGCAGTACCCCCACCCCAATGCCACcttgcacccccacccccagcaccCACAGCCCTCTGCCACCCCCActggacagcagcagcagcaaggcCAGCACACGGGTAGCCACCCTGCCCCCAGCCCTGTACAGTTGATGTATGTGTTGAAACAGCACGCCCAGCACCAGGCCGCGCAGGCGCTCCACCTGGGGAACCCTCCTCAGCAGCCCATGTACTCGACCCTGACCCCCACCCCGCCCTCCATGACTCCCGGCCCCAACCCACAGTCCCCGCAGACCAGCTTCCCCTCGGCCCAGCAGGCGGTCTACATCCACCCCCAACAGGTGCAGCATGGCTACAACCCCTCGCATATGGCACATGTGCCTCAGGCCCATGTGCAGTCTGGGATGGTCCCCCCACACCACGCCACACCGACACACCCACCCATGATGCTGATGGCAACTCAGCCCCCTGGTGGCCCGCAGCCACCTATTCCTCAGAACACTCTGCCTCCCATTCCGGTCTCCTCCACCACACACTTCTCGTACATGACACACCCCTCAGtGCAACCCCACCATCAACAGCAGTTGTAGGAGATCCTACACCTCcttcccccgcccccccaaccAACCTGCTACACAGATCTGGAAAAAGAGACGGCTAGGTTTTCTCATCAATGCTAAACTCTTGCTTTCTTGTAAATTAATTAGGAATGCTAACCGGTCGACTTGCAGTGGACAGATTTTGAACTGACTAAAGAGTTTTAATAACATAATGGAAAAACCCCACAGTTATCGTATTGTAATAAACTCCTGCAGAACCAAACAGAACCCAACTCCCAACCAAACCCGACTTCAGCTTGCTGATAACTGGAACCTGGTGTCCTCTGACCCTTGTAAGTTATAAAACTCTTCACATTAAGAAAGTATTAACATTATTGTTAATCGCTGCTGCTATTGCTGCAAACAAGACTTGGGGAAACTCTTCTCATTCTAACCAaacttgaaacaaaacaaaaaaaagacttgcTATAACAGAATCTGGTTGGCAAAAAGTTGGATTATTTATGAAACATGATGGCTGAGGTGACCTGCACTCACCTGACAGTTATGTAACTTTTAAGTTAAAAGAACTTTTACTTTGtagataatataaataataaaaaaaaaatacaaaaaaaaacaaaaaaaa

Function

GO: NA

KEGG:

id description
K23625 ATXN2_2L; ataxin 2/2L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018882 True 4197 mRNA 0.54 26 24466411 24505090

Neighbor

gene id symbol gene type direction distance location
AMCG00018881 rpl6,LOC107671003 coding downstream 3501 24459490 ~ 24462910 (-)
AMCG00018879 hectd4 coding downstream 11112 24386599 ~ 24455299 (-)
AMCG00018877 NA coding downstream 95769 24356938 ~ 24370642 (-)
AMCG00018878 NA coding downstream 151361 24314433 ~ 24315050 (-)
AMCG00018875 ttc28 coding downstream 379162 24069954 ~ 24087249 (-)
AMCG00018880 brap,LOC107706763,LOC107712082 coding upstream 4388 24509478 ~ 24526970 (-)
AMCG00018884 mapkapk5 coding upstream 35291 24540381 ~ 24571184 (-)
AMCG00018883 NA coding upstream 70963 24576053 ~ 24589514 (-)
AMCG00018885 NA coding upstream 118613 24623703 ~ 24624608 (-)
AMCG00018888 si:ch211-193c2.2 coding upstream 147369 24652459 ~ 24659021 (-)
G119235 NA non-coding downstream 1354891 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1481639 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 1482845 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1608732 22834759 ~ 22857679 (-)
G119128 NA non-coding downstream 1700385 22762360 ~ 22766026 (-)
G119382 NA non-coding upstream 14323 24519413 ~ 24608462 (-)
G119384 NA non-coding upstream 61056 24566146 ~ 24568299 (-)
G119426 NA non-coding upstream 331697 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 539861 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 757272 25262362 ~ 25333175 (-)
G119144 NA other downstream 1660073 22804345 ~ 22806338 (-)
G118936 NA other downstream 2352716 22080464 ~ 22113695 (-)
G118727 NA other downstream 3768584 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3776489 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3787974 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 570308 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 629681 25134771 ~ 25171644 (-)
G119545 NA other upstream 681117 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 1946634 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2272545 26777635 ~ 26797720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_04495351_04521800 ATXN2 coding CI01000039 null 4495351 ~ 4522319 (+)