AMCG00018883


Basic Information

Item Value
gene id AMCG00018883
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24576053 ~ 24589514 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018883
ATGGTTAAGGGgaccttttttctctctcctctacTACCCCCCTCCATGTTCCCTTGCTGTATTGCCTCCTCacactggtctgtgtgtgtgtgtgtgtgtgttgtacagggCTCCAGTCCGAAGTTGAGGGCTCCCTGCTCTGATATTACTGAGATTCGCCGCTGCAACCGATTGGAGATGCCGGACAACATGAACACTTTTGTTCTAAAGGTTAATCACGTCCCTGGCAGTTTTATATTTGAGACTGATAATGACCAGcaagtgagctcctggacaacTGAACTTAAAGAATGTATTAAACCTGGGCCAGACAGTGCTGACGTGGAGCTGCTATCCTCTCCTCTGAGCGACGTGTTCCCGCCCGTGAGGAGGGGGAGCTCAGAATCCATGAACCAAGGGGTGACGCACTTTGGCATGGCAGAACAGATCTATCACAAGACGGATCACTTCCTGTCATCCTACCCCTGGTTCCATGGGCCCATCTCGCGGGTGAAGGCGGCCCAGCTGGTGCAGGGGGCGGGGCCTCAGGGCCATGGTGTGTTCCTGGTGCGGCAGAGCGAGACGCGTCGGGGAGACTATGTACTCACCTTTAACTTCCAGGGCAAGGCCAAGCATCTGCGGCTTTCTGTGACAGACAGGGGGCACTGTCGAGTCCAGCATCTGCGCTTCCCCTCCGTTGTGGACATGCTTAATCACTTCCGGGTCTGCCCCATCCCGCTGGAGTGTGGCACAGCCTGTGACGTCAAACTGTCCAGCTACGTCGTGGCCAGTTGCTCAGCACAAGGTAGGCCTTCTCCAGTACCAGGGGATGGGCTGGGCAGTGTCATGTGCCACAATGCCATGTGTTTGCCTTCAGGTCTGCACCGCTGGAGTTCGGAGCCCAACCTGGCGCACGTCAGCATGCCTGGCTGCCCACGAGTGCCCCTCCTGGACAccctacacccccccccccagcgtTCGCTCCCTCAGGAAGAGGCCCTGTCTGCGGGCCCGTGGCGTGCTGAGTCTGTGGGAACACAGCCCCCCCACCATGGCCAGCATCGTGATTCAGACTATGAACTGGAGCCGCCGGACAGGGGGCGCAGACGAGCAGTAGACAACCAGTACATGTTCTTGTGA

Function

GO: NA

KEGG:

id description
K12459 SH2B1_3; SH2B adaptor protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018883 True 1119 mRNA 0.58 6 24576053 24589514

Neighbor

gene id symbol gene type direction distance location
AMCG00018884 mapkapk5 coding downstream 4869 24540381 ~ 24571184 (-)
AMCG00018880 brap,LOC107706763,LOC107712082 coding downstream 49083 24509478 ~ 24526970 (-)
AMCG00018882 NA coding downstream 70963 24466411 ~ 24505090 (-)
AMCG00018881 rpl6,LOC107671003 coding downstream 113143 24459490 ~ 24462910 (-)
AMCG00018879 hectd4 coding downstream 120754 24386599 ~ 24455299 (-)
AMCG00018885 NA coding upstream 34189 24623703 ~ 24624608 (-)
AMCG00018888 si:ch211-193c2.2 coding upstream 62945 24652459 ~ 24659021 (-)
AMCG00018889 LOC107662051 coding upstream 70952 24660466 ~ 24690814 (-)
AMCG00018887 NA coding upstream 126309 24715823 ~ 24736151 (-)
AMCG00018890 NA coding upstream 167355 24756869 ~ 24776700 (-)
G119384 NA non-coding downstream 7754 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 1464533 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1591281 22984184 ~ 22984772 (-)
G119180 NA non-coding downstream 1592487 22982866 ~ 22983566 (-)
G119129 NA non-coding downstream 1718374 22834759 ~ 22857679 (-)
G119426 NA non-coding upstream 247273 24836787 ~ 24842121 (-)
G119466 NA non-coding upstream 455437 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 672848 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 889496 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 982540 25572054 ~ 25578122 (-)
G119144 NA other downstream 1769715 22804345 ~ 22806338 (-)
G118936 NA other downstream 2462358 22080464 ~ 22113695 (-)
G118727 NA other downstream 3878226 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 3886131 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 3897616 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 485884 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 545257 25134771 ~ 25171644 (-)
G119545 NA other upstream 596693 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 1862210 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 2188121 26777635 ~ 26797720 (-)

Expression


Co-expression Network